Rmu_sc0006966.1_g000003

DREPP plasma membrane polypeptide

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0006966.1
OG0003896
Physical Location & Seq
Forward (+)
17166 .. 18708
1543 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 891 bp
atgcaggcaagagccaaaccagaaacccagccacattggaattttggttgggactgttatgcccctaaagttatccccctgatgaggacagtaaggtccttttgtgcaaagggagttggctgctacagcaacatattgaggcagactttgatagttctgattgcactcatcaacaaacaggcagaaagatcagaaggagaaagagacatacaaataagggtatttgagtttgagaagaattcaaagatgggttactggaaaacaaaggtgcttcccacaatcaagaaggtgtttgagaacaagggcagtatcaaaaaggctgaagctgctgaagcttgcaagacctttgatgagtcgaaggagagttatgccaaggagtttgaagagaagaaggccgagtatcaagtaaaagtagttgaattatatgaagcttcctctgctgaaatcaagactttgattaaggagcggaagctggctgggttgaagaagtactctgctgcggtccacaagttccttgaagagcttgccaagatagactttccaggatcgaaaccagtctcagaagcatcatcaaagtatggacctgcctacgtctcaggtccagtcttctttgtgtttgagaaggtctcaacgtatattgtgacagaagagaaggtagcggagacaacgccaccagaaccaacaccagctaaagccgaagaggaaacaagttccagaaaagaaaaggagatagtgatcgaagaagagaagaaggaagaggttgtagaggtgaagaaagaagaagaggtggtggtggtggaggagaagaaggaagagcctgaagcatcatgtggtgaggaaaagcctaaggaggaggaagctgctcctgctgctgaaccagcaaagccttga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000226 GO:0001101 GO:0001558 GO:0002237 GO:0003674 GO:0005488 GO:0005507 GO:0005509 GO:0005515 GO:0005516 GO:0005543 GO:0005546 GO:0005547 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005856 GO:0005874 GO:0005881 GO:0005886 GO:0005911 GO:0006464 GO:0006497 GO:0006498 GO:0006499 GO:0006807 GO:0006810 GO:0006950 GO:0006952 GO:0006970 GO:0006996 GO:0007010 GO:0007017 GO:0007154 GO:0008017 GO:0008092 GO:0008150 GO:0008152 GO:0008289 GO:0009058 GO:0009059 GO:0009266 GO:0009267 GO:0009409 GO:0009414 GO:0009415 GO:0009506 GO:0009507 GO:0009536 GO:0009605 GO:0009607 GO:0009617 GO:0009628 GO:0009651 GO:0009719 GO:0009725 GO:0009735 GO:0009743 GO:0009987 GO:0009991 GO:0010033 GO:0010035 GO:0010038 GO:0010039 GO:0010118 GO:0010350 GO:0010555 GO:0010638 GO:0010639 GO:0015630 GO:0015631 GO:0016020 GO:0016032 GO:0016043 GO:0018377 GO:0019058 GO:0019538 GO:0022603 GO:0022604 GO:0030054 GO:0030308 GO:0030865 GO:0031110 GO:0031111 GO:0031112 GO:0031113 GO:0031114 GO:0031115 GO:0031117 GO:0031122 GO:0031224 GO:0031225 GO:0031226 GO:0031333 GO:0031365 GO:0031667 GO:0031668 GO:0031669 GO:0032026 GO:0032271 GO:0032272 GO:0032886 GO:0033043 GO:0033554 GO:0034645 GO:0035091 GO:0035864 GO:0035865 GO:0036211 GO:0040008 GO:0042157 GO:0042158 GO:0042221 GO:0042594 GO:0042742 GO:0043167 GO:0043168 GO:0043169 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043243 GO:0043244 GO:0043254 GO:0043325 GO:0043412 GO:0043543 GO:0043622 GO:0044087 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044403 GO:0044419 GO:0044422 GO:0044424 GO:0044425 GO:0044430 GO:0044444 GO:0044446 GO:0044459 GO:0044464 GO:0044766 GO:0045926 GO:0046658 GO:0046688 GO:0046794 GO:0046872 GO:0046914 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048638 GO:0048640 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051093 GO:0051128 GO:0051129 GO:0051130 GO:0051179 GO:0051234 GO:0051493 GO:0051494 GO:0051495 GO:0051510 GO:0051511 GO:0051592 GO:0051704 GO:0051707 GO:0051716 GO:0055044 GO:0065007 GO:0070507 GO:0070887 GO:0071214 GO:0071216 GO:0071219 GO:0071241 GO:0071248 GO:0071280 GO:0071281 GO:0071286 GO:0071310 GO:0071322 GO:0071325 GO:0071470 GO:0071472 GO:0071496 GO:0071704 GO:0071840 GO:0071944 GO:0072708 GO:0072709 GO:0075733 GO:0080025 GO:0090332 GO:0097435 GO:0098542 GO:0099080 GO:0099081 GO:0099512 GO:0099513 GO:0104004 GO:1901564 GO:1901566 GO:1901576 GO:1901700 GO:1901701 GO:1901879 GO:1901881 GO:1901981 GO:1902579 GO:1902903 GO:1902904 GO:1902905 GO:1902936
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DREPP

Protein Analysis

296

Amino Acids

33.5

Weight (kDa)

5.59

Isoelectric Point (pI)

52.59

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DREPP PF05558 83 - 290 9.3e-76 DREPP plasma membrane polypeptide
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 94
Acc36I ACCTGC 1 cut(s) 592
AccBSI CCGCTC 1 cut(s) 466
AciI CCGC 3 cut(s) 466, 500, 659
AclWI GGATC 1 cut(s) 553
AcsI RAATTY 2 cut(s) 40, 238
AcuI CTGAAG 3 cut(s) 342, 351, 840
AfaI GTAC 1 cut(s) 491
AfiI CCNNNNNNNGG 1 cut(s) 84
AgsI TTSAA 5 cut(s) 243, 383, 419, 484, 518
AjnI CCWGG 1 cut(s) 541
AluBI AGCT 7 cut(s) 326, 335, 431, 472, 523, 689, 860
AluI AGCT 7 cut(s) 326, 335, 431, 472, 523, 689, 860
Alw26I GTCTC 5 cut(s) 198, 562, 598, 631, 656
AlwI GGATC 1 cut(s) 553
AoxI GGCC 1 cut(s) 393
ApeKI GCWGC 5 cut(s) 120, 326, 497, 860, 869
ApoI RAATTY 2 cut(s) 40, 238
AspS9I GGNCC 4 cut(s) 96, 502, 581, 599
AsuHPI GGTGA 2 cut(s) 781, 845
AvaII GGWCC 4 cut(s) 96, 502, 581, 599
AxyI CCTNAGG 1 cut(s) 846
BbsI GAAGAC 1 cut(s) 598
BbvI GCAGC 5 cut(s) 107, 313, 484, 847, 856
BccI CCATC 1 cut(s) 241
BciT130I CCWGG 1 cut(s) 543
BcoDI GTCTC 5 cut(s) 198, 562, 598, 631, 656
BfmI CTRYAG 1 cut(s) 124
BfuAI ACCTGC 1 cut(s) 592
BisI GCNGC 5 cut(s) 121, 327, 498, 861, 870
BlsI GCNGC 5 cut(s) 122, 328, 499, 862, 871
BmcAI AGTACT 1 cut(s) 491
Bme1390I CCNGG 1 cut(s) 543
Bme18I GGWCC 4 cut(s) 96, 502, 581, 599
BmgT120I GGNCC 4 cut(s) 96, 502, 581, 599
BmrFI CCNGG 1 cut(s) 543
BmsI GCATC 2 cut(s) 575, 833
BpiI GAAGAC 1 cut(s) 598
BplI GAGNNNNNCTC 2 cut(s) 611, 643
BsaBI GATNNNNATC 1 cut(s) 734
BsaI GGTCTC 1 cut(s) 631
BsaJI CCNNGG 1 cut(s) 372
Bsc4I CCNNNNNNNGG 1 cut(s) 84
Bse1I ACTGG 3 cut(s) 260, 554, 602
Bse21I CCTNAGG 1 cut(s) 846
Bse8I GATNNNNATC 1 cut(s) 734
BseBI CCWGG 1 cut(s) 543
BseDI CCNNGG 1 cut(s) 372
BseJI GATNNNNATC 1 cut(s) 734
BseLI CCNNNNNNNGG 1 cut(s) 84
BseMII CTCAG 2 cut(s) 573, 609
BseNI ACTGG 3 cut(s) 260, 554, 602
BseRI GAGGAG 2 cut(s) 815, 866
BseXI GCAGC 5 cut(s) 107, 313, 484, 847, 856
BseYI CCCAGC 2 cut(s) 27, 476
BshFI GGCC 1 cut(s) 395
BslFI GGGAC 1 cut(s) 65
BslI CCNNNNNNNGG 1 cut(s) 84
BsmAI GTCTC 5 cut(s) 198, 562, 598, 631, 656
BsmBI CGTCTC 1 cut(s) 598
BsmFI GGGAC 1 cut(s) 65
BsnI GGCC 1 cut(s) 395
Bso31I GGTCTC 1 cut(s) 631
Bsp143I GATC 3 cut(s) 188, 545, 735
BspACI CCGC 3 cut(s) 466, 500, 659
BspANI GGCC 1 cut(s) 395
BspCNI CTCAG 2 cut(s) 572, 608
BspMI ACCTGC 1 cut(s) 592
BspPI GGATC 1 cut(s) 553
BspQI GCTCTTC 2 cut(s) 513, 807
BspTNI GGTCTC 1 cut(s) 631
BsrBI CCGCTC 1 cut(s) 466
BsrI ACTGG 3 cut(s) 260, 554, 602
BssECI CCNNGG 1 cut(s) 372
BssMI GATC 3 cut(s) 188, 545, 735
BssT1I CCWWGG 1 cut(s) 372
Bst2UI CCWGG 1 cut(s) 543
Bst4CI ACNGT 2 cut(s) 56, 91
Bst6I CTCTTC 8 cut(s) 378, 513, 642, 693, 738, 750, 777, 807
BstC8I GCNNGC 4 cut(s) 6, 337, 474, 525
BstDEI CTNAG 3 cut(s) 559, 595, 846
BstKTI GATC 3 cut(s) 191, 548, 738
BstMAI GTCTC 5 cut(s) 198, 562, 598, 631, 656
BstMBI GATC 3 cut(s) 188, 545, 735
BstMWI GCNNNNNNNGC 7 cut(s) 126, 326, 332, 437, 866, 869, 878
BstNI CCWGG 1 cut(s) 543
BstSCI CCNGG 1 cut(s) 541
BstSFI CTRYAG 1 cut(s) 124
BstV1I GCAGC 5 cut(s) 107, 313, 484, 847, 856
BstV2I GAAGAC 1 cut(s) 598
Bsu36I CCTNAGG 1 cut(s) 846
BsuRI GGCC 1 cut(s) 395
BveI ACCTGC 1 cut(s) 592
Cac8I GCNNGC 4 cut(s) 6, 337, 474, 525
Cfr13I GGNCC 4 cut(s) 96, 502, 581, 599
Csp6I GTAC 1 cut(s) 490
CviAII CATG 1 cut(s) 828
CviQI GTAC 1 cut(s) 490
DdeI CTNAG 3 cut(s) 559, 595, 846
DpnI GATC 3 cut(s) 190, 547, 737
DpnII GATC 3 cut(s) 188, 545, 735
DrdI GACNNNNNNGTC 1 cut(s) 94
DseDI GACNNNNNNGTC 1 cut(s) 94
Eam1104I CTCTTC 8 cut(s) 378, 513, 642, 693, 738, 750, 777, 807
EarI CTCTTC 8 cut(s) 378, 513, 642, 693, 738, 750, 777, 807
Eco130I CCWWGG 1 cut(s) 372
Eco31I GGTCTC 1 cut(s) 631
Eco47I GGWCC 4 cut(s) 96, 502, 581, 599
Eco57I CTGAAG 3 cut(s) 342, 351, 840
Eco81I CCTNAGG 1 cut(s) 846
EcoO109I RGGNCCY 1 cut(s) 96
EcoRI GAATTC 1 cut(s) 238
EcoRII CCWGG 1 cut(s) 541
EcoT14I CCWWGG 1 cut(s) 372
ErhI CCWWGG 1 cut(s) 372
Esp3I CGTCTC 1 cut(s) 598
FaeI CATG 1 cut(s) 831
FaiI YATR 9 cut(s) 60, 134, 209, 369, 424, 426, 579, 636, 829
FalI AAGNNNNNCTT 2 cut(s) 521, 553
FaqI GGGAC 1 cut(s) 65
FatI CATG 1 cut(s) 827
Fnu4HI GCNGC 5 cut(s) 121, 327, 498, 861, 870
Fsp4HI GCNGC 5 cut(s) 121, 327, 498, 861, 870
GluI GCNGC 5 cut(s) 121, 327, 498, 861, 870
GsaI CCCAGC 2 cut(s) 31, 480
HaeIII GGCC 1 cut(s) 395
Hin1II CATG 1 cut(s) 831
HindIII AAGCTT 2 cut(s) 333, 429
HinfI GANTC 1 cut(s) 353
HphI GGTGA 2 cut(s) 781, 845
Hpy166II GTNNAC 1 cut(s) 505
Hpy188I TCNGA 3 cut(s) 159, 193, 562
Hpy188III TCNNGA 3 cut(s) 283, 448, 714
Hpy8I GTNNAC 1 cut(s) 505
HpyAV CCTTC 8 cut(s) 188, 280, 352, 385, 616, 646, 745, 802
HpyCH4III ACNGT 2 cut(s) 56, 91
HpyCH4IV ACGT 2 cut(s) 591, 632
HpyCH4V TGCA 4 cut(s) 4, 107, 164, 339
HpyF10VI GCNNNNNNNGC 7 cut(s) 126, 326, 332, 437, 866, 869, 878
HpyF3I CTNAG 3 cut(s) 559, 595, 846
HpySE526I ACGT 2 cut(s) 591, 632
Hsp92II CATG 1 cut(s) 831
Kzo9I GATC 3 cut(s) 188, 545, 735
LguI GCTCTTC 2 cut(s) 513, 807
LmnI GCTCC 2 cut(s) 463, 868
Lsp1109I GCAGC 5 cut(s) 107, 313, 484, 847, 856
LweI GCATC 2 cut(s) 575, 833
MaeII ACGT 2 cut(s) 591, 632
MaeIII GTNAC 2 cut(s) 251, 640
MalI GATC 3 cut(s) 190, 547, 737
MbiI CCGCTC 1 cut(s) 466
MboI GATC 3 cut(s) 188, 545, 735
MluCI AATT 3 cut(s) 40, 238, 419
MlyI GAGTC 1 cut(s) 362
MseI TTAA 1 cut(s) 459
MspR9I CCNGG 1 cut(s) 543
MvaI CCWGG 1 cut(s) 543
MwoI GCNNNNNNNGC 7 cut(s) 126, 326, 332, 437, 866, 869, 878
NdeII GATC 3 cut(s) 188, 545, 735
NlaIII CATG 1 cut(s) 831
NmeAIII GCCGAG 1 cut(s) 421
NmuCI GTSAC 1 cut(s) 640
PciSI GCTCTTC 2 cut(s) 513, 807
PfoI TCCNGGA 1 cut(s) 541
PkrI GCNGC 5 cut(s) 122, 328, 499, 862, 871
PleI GAGTC 1 cut(s) 361
PpsI GAGTC 1 cut(s) 361
PpuMI RGGWCCY 1 cut(s) 96
Psp5II RGGWCCY 1 cut(s) 96
Psp6I CCWGG 1 cut(s) 541
PspFI CCCAGC 2 cut(s) 27, 476
PspGI CCWGG 1 cut(s) 541
PspPI GGNCC 4 cut(s) 96, 502, 581, 599
PspPPI RGGWCCY 1 cut(s) 96
RsaI GTAC 1 cut(s) 491
RsaNI GTAC 1 cut(s) 490
SapI GCTCTTC 2 cut(s) 513, 807
SaqAI TTAA 1 cut(s) 459
SatI GCNGC 5 cut(s) 121, 327, 498, 861, 870
Sau3AI GATC 3 cut(s) 188, 545, 735
Sau96I GGNCC 4 cut(s) 96, 502, 581, 599
ScaI AGTACT 1 cut(s) 491
SchI GAGTC 1 cut(s) 362
ScrFI CCNGG 1 cut(s) 543
SfaNI GCATC 2 cut(s) 575, 833
SfcI CTRYAG 1 cut(s) 124
SinI GGWCC 4 cut(s) 96, 502, 581, 599
Sse9I AATT 3 cut(s) 40, 238, 419
SsiI CCGC 3 cut(s) 466, 500, 659
StyD4I CCNGG 1 cut(s) 541
StyI CCWWGG 1 cut(s) 372
TaaI ACNGT 2 cut(s) 56, 91
TaiI ACGT 2 cut(s) 594, 635
TaqI TCGA 3 cut(s) 356, 548, 738
TasI AATT 3 cut(s) 40, 238, 419
TatI WGTACW 1 cut(s) 489
Tru1I TTAA 1 cut(s) 459
Tru9I TTAA 1 cut(s) 459
TseFI GTSAC 1 cut(s) 640
TseI GCWGC 5 cut(s) 120, 326, 497, 860, 869
Tsp45I GTSAC 1 cut(s) 640
TspDTI ATGAA 1 cut(s) 441
VpaK11BI GGWCC 4 cut(s) 96, 502, 581, 599
XapI RAATTY 2 cut(s) 40, 238
ZrmI AGTACT 1 cut(s) 491
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.