Rmu_sc0007017.1_g000002

Saposin (B) Domains

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0007017.1
OG0012842
Physical Location & Seq
Reverse (-)
8500 .. 11733
3234 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 726 bp
atgcgctttatgatggccaatgaccaaaatttggggccaaacaccaaactttgccttgacttcattttcaaagtttttgagctatcggaactcctgatatcagaaaagcggataaagggaagggtagctgttgtatataagaagccaacaatcaaagcaacaacgcttcaacaattcaacgccttcgtttgttcaacccaaccccaaatctcaggaacaccaatttcaggcaccatggatatgagagttgggttcataattctttttgtgttgggagctagttgggcttgtgatgctagacatgtggtggagcttagtttgtcagtgcaagagggggaacctcaaactttgaaagaattttctgggaatgaaaatgtttgcacattatgtgaggagtttgcatctcaggcacttgattacatcagtgaaaacaagactcagactgagatcattgcaattctacataacacctgctctcaattgaaatctttcagccagcagtgtgtcactttggtggactactatgctcctctcttcttcctagaggttacctctgtagaaccagttgatttctgtcggaaggtcaacctatgtcagcaagttgcaacattttcttcgcaactccgtgaggacagctgtggattatgtcaccgggctgtttcagaagtattagccaagttaaaagatcctgatacacaggtctgtactttcacccataattattaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000323 GO:0001655 GO:0001664 GO:0001775 GO:0002252 GO:0002263 GO:0002274 GO:0002275 GO:0002283 GO:0002366 GO:0002376 GO:0002443 GO:0002444 GO:0002446 GO:0002576 GO:0003006 GO:0003674 GO:0003824 GO:0004553 GO:0004565 GO:0005102 GO:0005488 GO:0005515 GO:0005543 GO:0005575 GO:0005576 GO:0005615 GO:0005622 GO:0005623 GO:0005737 GO:0005764 GO:0005765 GO:0005766 GO:0005773 GO:0005774 GO:0005775 GO:0005886 GO:0006629 GO:0006643 GO:0006664 GO:0006665 GO:0006687 GO:0006807 GO:0006810 GO:0006811 GO:0006820 GO:0006869 GO:0006887 GO:0006955 GO:0007154 GO:0007165 GO:0007186 GO:0007187 GO:0007188 GO:0007193 GO:0007275 GO:0008047 GO:0008150 GO:0008152 GO:0008289 GO:0009888 GO:0009894 GO:0009987 GO:0010506 GO:0010876 GO:0012505 GO:0012506 GO:0015711 GO:0015849 GO:0015925 GO:0016020 GO:0016192 GO:0016787 GO:0016798 GO:0019216 GO:0019222 GO:0022414 GO:0023052 GO:0030141 GO:0030154 GO:0030234 GO:0030659 GO:0030667 GO:0030850 GO:0030855 GO:0031090 GO:0031323 GO:0031329 GO:0031406 GO:0031410 GO:0031974 GO:0031982 GO:0032501 GO:0032502 GO:0032940 GO:0033036 GO:0033218 GO:0033293 GO:0035265 GO:0035577 GO:0035594 GO:0035627 GO:0036094 GO:0036230 GO:0040007 GO:0042119 GO:0042582 GO:0042802 GO:0042803 GO:0042886 GO:0043085 GO:0043167 GO:0043168 GO:0043177 GO:0043202 GO:0043208 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043299 GO:0043312 GO:0044093 GO:0044237 GO:0044238 GO:0044255 GO:0044421 GO:0044422 GO:0044424 GO:0044433 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0045055 GO:0045321 GO:0046625 GO:0046836 GO:0046903 GO:0046942 GO:0046983 GO:0048513 GO:0048589 GO:0048608 GO:0048731 GO:0048732 GO:0048856 GO:0048869 GO:0050789 GO:0050790 GO:0050794 GO:0050896 GO:0051179 GO:0051234 GO:0051716 GO:0051861 GO:0060429 GO:0060736 GO:0060742 GO:0061458 GO:0065007 GO:0065009 GO:0070013 GO:0071702 GO:0071704 GO:0071705 GO:0071944 GO:0080090 GO:0097001 GO:0097367 GO:0097708 GO:0098588 GO:0098772 GO:0098805 GO:0098852 GO:0099503 GO:1901135 GO:1901264 GO:1901564 GO:1903509 GO:1905572 GO:1905573 GO:1905574 GO:1905575 GO:1905576 GO:1905577
KEGG Pathways
Metabolic & Signaling
ko04142 map04142
Pfam Domains
Protein Families
SapB_1 SapB_2

Protein Analysis

241

Amino Acids

27.06

Weight (kDa)

5.43

Isoelectric Point (pI)

35.95

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SapB_1 PF05184 126 - 161 9.8e-12 Saposin-like type B, region 1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 479
Acc36I ACCTGC 1 cut(s) 479
AccB1I GGYRCC 1 cut(s) 230
AccB7I CCANNNNNTGG 1 cut(s) 31
AciI CCGC 1 cut(s) 109
AclWI GGATC 1 cut(s) 680
AcoI YGGCCR 1 cut(s) 15
AcsI RAATTY 2 cut(s) 28, 356
AfaI GTAC 1 cut(s) 706
AfiI CCNNNNNNNGG 2 cut(s) 31, 227
AflIII ACRYGT 1 cut(s) 301
AgsI TTSAA 6 cut(s) 70, 170, 178, 195, 352, 484
AleI CACNNNNGTG 1 cut(s) 512
AluBI AGCT 5 cut(s) 82, 128, 278, 313, 636
AluI AGCT 5 cut(s) 82, 128, 278, 313, 636
AlwI GGATC 1 cut(s) 680
AoxI GGCC 2 cut(s) 15, 35
ApoI RAATTY 2 cut(s) 28, 356
Asp700I GAANNNNTTC 1 cut(s) 488
AspLEI GCGC 1 cut(s) 6
AspS9I GGNCC 1 cut(s) 35
AsuC2I CCSGG 1 cut(s) 653
AsuHPI GGTGA 2 cut(s) 641, 703
BaeI ACNNNNGTAYC 2 cut(s) 684, 717
BalI TGGCCA 1 cut(s) 17
BanI GGYRCC 1 cut(s) 230
BccI CCATC 1 cut(s) 7
BcnI CCSGG 1 cut(s) 653
BfaI CTAG 3 cut(s) 279, 297, 542
BfmI CTRYAG 1 cut(s) 555
BfuAI ACCTGC 1 cut(s) 479
Bme1390I CCNGG 1 cut(s) 653
BmgT120I GGNCC 1 cut(s) 35
BmiI GGNNCC 3 cut(s) 36, 232, 339
BmrFI CCNGG 1 cut(s) 653
BmsI GCATC 2 cut(s) 283, 410
BplI GAGNNNNNCTC 2 cut(s) 536, 568
BpuMI CCSGG 1 cut(s) 653
BsaJI CCNNGG 1 cut(s) 234
Bsc4I CCNNNNNNNGG 2 cut(s) 31, 227
Bse1I ACTGG 1 cut(s) 563
Bse3DI GCAATG 1 cut(s) 450
BseDI CCNNGG 1 cut(s) 234
BseLI CCNNNNNNNGG 2 cut(s) 31, 227
BseMI GCAATG 1 cut(s) 450
BseMII CTCAG 4 cut(s) 225, 419, 435, 452
BseNI ACTGG 1 cut(s) 563
BseRI GAGGAG 2 cut(s) 407, 519
BshFI GGCC 2 cut(s) 17, 37
BshNI GGYRCC 1 cut(s) 230
BsiSI CCGG 1 cut(s) 652
BslI CCNNNNNNNGG 2 cut(s) 31, 227
BsnI GGCC 2 cut(s) 17, 37
Bsp143I GATC 2 cut(s) 447, 685
Bsp19I CCATGG 1 cut(s) 234
BspACI CCGC 1 cut(s) 109
BspANI GGCC 2 cut(s) 17, 37
BspCNI CTCAG 4 cut(s) 224, 418, 436, 451
BspLI GGNNCC 3 cut(s) 36, 232, 339
BspMI ACCTGC 1 cut(s) 479
BspPI GGATC 1 cut(s) 680
BspT107I GGYRCC 1 cut(s) 230
BsrDI GCAATG 1 cut(s) 450
BsrI ACTGG 1 cut(s) 563
BssECI CCNNGG 1 cut(s) 234
BssMI GATC 2 cut(s) 447, 685
BssT1I CCWWGG 1 cut(s) 234
Bst6I CTCTTC 1 cut(s) 539
BstC8I GCNNGC 1 cut(s) 497
BstDEI CTNAG 5 cut(s) 211, 314, 405, 438, 444
BstDSI CCRYGG 1 cut(s) 234
BstEII GGTNACC 1 cut(s) 547
BstHHI GCGC 1 cut(s) 6
BstKTI GATC 2 cut(s) 450, 688
BstMBI GATC 2 cut(s) 447, 685
BstMWI GCNNNNNNNGC 3 cut(s) 284, 293, 407
BstNSI RCATGY 1 cut(s) 305
BstPI GGTNACC 1 cut(s) 547
BstSCI CCNGG 1 cut(s) 651
BstSFI CTRYAG 1 cut(s) 555
BstX2I RGATCY 1 cut(s) 685
BstYI RGATCY 1 cut(s) 685
BsuRI GGCC 2 cut(s) 17, 37
BtgI CCRYGG 1 cut(s) 234
BtsI GCAGTG 1 cut(s) 506
BtsIMutI CAGTG 3 cut(s) 330, 430, 506
BveI ACCTGC 1 cut(s) 479
Cac8I GCNNGC 1 cut(s) 497
CfoI GCGC 1 cut(s) 6
Cfr13I GGNCC 1 cut(s) 35
Csp6I GTAC 1 cut(s) 705
CviAII CATG 2 cut(s) 235, 302
CviQI GTAC 1 cut(s) 705
DdeI CTNAG 5 cut(s) 211, 314, 405, 438, 444
DpnI GATC 2 cut(s) 449, 687
DpnII GATC 2 cut(s) 447, 685
EaeI YGGCCR 1 cut(s) 15
Eam1104I CTCTTC 1 cut(s) 539
EarI CTCTTC 1 cut(s) 539
Eco130I CCWWGG 1 cut(s) 234
Eco32I GATATC 1 cut(s) 99
Eco91I GGTNACC 1 cut(s) 547
EcoO65I GGTNACC 1 cut(s) 547
EcoRV GATATC 1 cut(s) 99
EcoT14I CCWWGG 1 cut(s) 234
ErhI CCWWGG 1 cut(s) 234
FaeI CATG 2 cut(s) 238, 305
FatI CATG 2 cut(s) 234, 301
FspBI CTAG 3 cut(s) 279, 297, 542
GlaI GCGC 1 cut(s) 5
HaeIII GGCC 2 cut(s) 17, 37
HapII CCGG 1 cut(s) 652
HhaI GCGC 1 cut(s) 6
Hin1II CATG 2 cut(s) 238, 305
Hin6I GCGC 1 cut(s) 4
HinP1I GCGC 1 cut(s) 4
HincII GTYRAC 1 cut(s) 586
HindII GTYRAC 1 cut(s) 586
HinfI GANTC 1 cut(s) 436
HpaII CCGG 1 cut(s) 652
HphI GGTGA 2 cut(s) 641, 703
Hpy166II GTNNAC 2 cut(s) 517, 586
Hpy188I TCNGA 5 cut(s) 88, 103, 441, 579, 664
Hpy188III TCNNGA 3 cut(s) 94, 213, 689
Hpy8I GTNNAC 2 cut(s) 517, 586
HpyAV CCTTC 3 cut(s) 114, 193, 574
HpyCH4V TGCA 5 cut(s) 328, 381, 401, 455, 605
HpyF10VI GCNNNNNNNGC 3 cut(s) 284, 293, 407
HpyF3I CTNAG 5 cut(s) 211, 314, 405, 438, 444
Hsp92II CATG 2 cut(s) 238, 305
HspAI GCGC 1 cut(s) 4
Kzo9I GATC 2 cut(s) 447, 685
LmnI GCTCC 3 cut(s) 275, 310, 532
LweI GCATC 2 cut(s) 283, 410
MaeI CTAG 3 cut(s) 279, 297, 542
MaeIII GTNAC 3 cut(s) 505, 547, 647
MalI GATC 2 cut(s) 449, 687
MboI GATC 2 cut(s) 447, 685
MboII GAAGA 3 cut(s) 526, 529, 606
MfeI CAATTG 1 cut(s) 479
MflI RGATCY 1 cut(s) 685
MlsI TGGCCA 1 cut(s) 17
MluCI AATT 8 cut(s) 28, 173, 222, 258, 356, 456, 479, 718
MluNI TGGCCA 1 cut(s) 17
MlyI GAGTC 1 cut(s) 430
MmeI TCCRAC 1 cut(s) 557
MnlI CCTC 7 cut(s) 325, 351, 385, 538, 540, 562, 622
Mox20I TGGCCA 1 cut(s) 17
MroXI GAANNNNTTC 1 cut(s) 488
MscI TGGCCA 1 cut(s) 17
MseI TTAA 2 cut(s) 680, 724
MslI CAYNNNNRTG 2 cut(s) 239, 512
Msp20I TGGCCA 1 cut(s) 17
MspA1I CMGCKG 1 cut(s) 636
MspI CCGG 1 cut(s) 652
MspR9I CCNGG 1 cut(s) 653
MunI CAATTG 1 cut(s) 479
MwoI GCNNNNNNNGC 3 cut(s) 284, 293, 407
NciI CCSGG 1 cut(s) 653
NcoI CCATGG 1 cut(s) 234
NdeII GATC 2 cut(s) 447, 685
NlaIII CATG 2 cut(s) 238, 305
NlaIV GGNNCC 3 cut(s) 36, 232, 339
NmuCI GTSAC 2 cut(s) 505, 647
NspI RCATGY 1 cut(s) 305
OliI CACNNNNGTG 1 cut(s) 512
PaqCI CACCTGC 1 cut(s) 479
PciI ACATGT 1 cut(s) 301
PdmI GAANNNNTTC 1 cut(s) 488
PflMI CCANNNNNTGG 1 cut(s) 31
PleI GAGTC 1 cut(s) 430
PpsI GAGTC 1 cut(s) 430
PscI ACATGT 1 cut(s) 301
PspEI GGTNACC 1 cut(s) 547
PspN4I GGNNCC 3 cut(s) 36, 232, 339
PspPI GGNCC 1 cut(s) 35
PsuI RGATCY 1 cut(s) 685
PvuII CAGCTG 1 cut(s) 636
RsaI GTAC 1 cut(s) 706
RsaNI GTAC 1 cut(s) 705
RseI CAYNNNNRTG 2 cut(s) 239, 512
SaqAI TTAA 2 cut(s) 680, 724
Sau3AI GATC 2 cut(s) 447, 685
Sau96I GGNCC 1 cut(s) 35
SchI GAGTC 1 cut(s) 430
ScrFI CCNGG 1 cut(s) 653
SfaNI GCATC 2 cut(s) 283, 410
SfcI CTRYAG 1 cut(s) 555
SmiMI CAYNNNNRTG 2 cut(s) 239, 512
Sse9I AATT 8 cut(s) 28, 173, 222, 258, 356, 456, 479, 718
SsiI CCGC 1 cut(s) 109
SspMI CTAG 3 cut(s) 279, 297, 542
StyD4I CCNGG 1 cut(s) 651
StyI CCWWGG 1 cut(s) 234
TasI AATT 8 cut(s) 28, 173, 222, 258, 356, 456, 479, 718
TatI WGTACW 1 cut(s) 704
Tru1I TTAA 2 cut(s) 680, 724
Tru9I TTAA 2 cut(s) 680, 724
TscAI CASTG 3 cut(s) 330, 430, 506
TseFI GTSAC 2 cut(s) 505, 647
Tsp45I GTSAC 2 cut(s) 505, 647
TspDTI ATGAA 3 cut(s) 52, 244, 384
TspGWI ACGGA 1 cut(s) 614
TspRI CASTG 3 cut(s) 330, 430, 506
Van91I CCANNNNNTGG 1 cut(s) 31
XapI RAATTY 2 cut(s) 28, 356
XceI RCATGY 1 cut(s) 305
XmnI GAANNNNTTC 1 cut(s) 488
XspI CTAG 3 cut(s) 279, 297, 542
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.