Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0007394.1

Orthogroup ID

OG0005084

Physical Location & Seq

Genomic Coordinates Forward (+)

43626 .. 45339

Gene Structure 1714 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 447 bp

atggaatgctcttcttcttcttcttcttcctcttcctcttctttaagcagcttttccatactgcgaaagccttgcccatttgtaccaccatttaccaccgtttataggaagcagcagcagcagcagcggcgaccccttatccaactctccgctgtttcttacaacaaattcattcacttcgctttggatgaatccaaacgccgcacccatttggccccttctcccctccaggaaagatataattccatggtttccatggatggtaatgcagaacttcaaatgtcatcattcaaagctactaagattaggcttttacgtagcctatgtattgagactcaaacaatgcaggttttggattttgctgtcttcccagaaccagaatttgatatgccaatattttgtgccaacttcttcaccagtgcggatgtcaacatagttgtgctgtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009507 GO:0009536 GO:0009987 GO:0010019 GO:0016491 GO:0016627 GO:0016636 GO:0023052 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0050619 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0055114 GO:0065007

KEGG Pathways

Metabolic & Signaling

ko00860 ko01110 map00860 map01110

Pfam Domains

Protein Families

Fe_bilin_red

Protein Analysis

148

Amino Acids

16.8

Weight (kDa)

8.78

Isoelectric Point (pI)

82.37

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Fe_bilin_red	PF05996	65 - 147	6.6e-16	Ferredoxin-dependent bilin reductase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005084)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G09150 AT3G09150 AT3G09150 AT3G09150
fragaria_vesca	FvH4_3g28130 FvH4_3g28130 FvH4_3g28130 FvH4_3g28130 FvH4_3g28130
malus_domestica	MD03G1169100.v1.1
prunus_persica	Prupe.4G258500_v2.0.a1 Prupe.4G258500_v2.0.a1 Prupe.4G258500_v2.0.a1 Prupe.4G258500_v2.0.a1 Prupe.4G258500_v2.0.a1 Prupe.4G258500_v2.0.a1
pyrus_communis	pycom03g12530
rosa_chinensis	RchiOBHm_Chr5g0050821
rosa_laevigata	RLG00000034741
rosa_multiflora	Rmu_sc0004083.1_g000001 Rmu_sc0007394.1_g000007 Rmu_sc0037809.1_g000001
rosa_roxburghii	Rroxscaffold_1G00029890
rosa_rugosa	Rorug05G0264300.1 Rorug05G0264400.1
rosa_samantha	Rh5AG336300 Rh5BG345900 Rh5CG373600 Rh5DG358900
rosa_wichuraiana	Rw5G031720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	337
AciI	CCGC	4 cut(s)	127, 150, 202, 422
AcsI	RAATTY	2 cut(s)	167, 380
AfaI	GTAC	1 cut(s)	84
AfiI	CCNNNNNNNGG	1 cut(s)	105
AgsI	TTSAA	2 cut(s)	278, 292
AjnI	CCWGG	1 cut(s)	228
AluBI	AGCT	2 cut(s)	51, 296
AluI	AGCT	2 cut(s)	51, 296
Alw26I	GTCTC	1 cut(s)	326
AoxI	GGCC	1 cut(s)	213
ApeKI	GCWGC	6 cut(s)	48, 112, 115, 118, 121, 124
ApoI	RAATTY	2 cut(s)	167, 380
AspS9I	GGNCC	1 cut(s)	214
AsuHPI	GGTGA	1 cut(s)	406
BbsI	GAAGAC	1 cut(s)	358
BbvI	GCAGC	6 cut(s)	60, 124, 127, 130, 133, 136
BccI	CCATC	1 cut(s)	254
BcgI	CGANNNNNNTGC	2 cut(s)	54, 88
BciT130I	CCWGG	1 cut(s)	230
BcoDI	GTCTC	1 cut(s)	326
BfuAI	ACCTGC	1 cut(s)	337
BisI	GCNGC	8 cut(s)	49, 113, 116, 119, 122, 125, 128, 202
BlsI	GCNGC	8 cut(s)	50, 114, 117, 120, 123, 126, 129, 203
Bme1390I	CCNGG	1 cut(s)	230
BmgT120I	GGNCC	1 cut(s)	214
BmiI	GGNNCC	1 cut(s)	216
BmrFI	CCNGG	1 cut(s)	230
BpiI	GAAGAC	1 cut(s)	358
BpmI	CTGGAG	1 cut(s)	212
BsaAI	YACGTR	1 cut(s)	317
BsaJI	CCNNGG	2 cut(s)	246, 255
Bsc4I	CCNNNNNNNGG	1 cut(s)	105
Bse1I	ACTGG	1 cut(s)	417
BseBI	CCWGG	1 cut(s)	230
BseDI	CCNNGG	2 cut(s)	246, 255
BseGI	GGATG	3 cut(s)	193, 265, 430
BseLI	CCNNNNNNNGG	1 cut(s)	105
BseNI	ACTGG	1 cut(s)	417
BseXI	GCAGC	6 cut(s)	60, 124, 127, 130, 133, 136
BshFI	GGCC	1 cut(s)	215
BslI	CCNNNNNNNGG	1 cut(s)	105
BsmAI	GTCTC	1 cut(s)	326
BsmI	GAATGC	1 cut(s)	11
BsnI	GGCC	1 cut(s)	215
Bsp19I	CCATGG	2 cut(s)	246, 255
BspACI	CCGC	4 cut(s)	127, 150, 202, 422
BspANI	GGCC	1 cut(s)	215
BspLI	GGNNCC	1 cut(s)	216
BspMI	ACCTGC	1 cut(s)	337
BspQI	GCTCTTC	1 cut(s)	16
BsrI	ACTGG	1 cut(s)	417
BssECI	CCNNGG	2 cut(s)	246, 255
BssT1I	CCWWGG	2 cut(s)	246, 255
Bst2UI	CCWGG	1 cut(s)	230
Bst4CI	ACNGT	1 cut(s)	100
Bst6I	CTCTTC	3 cut(s)	16, 37, 43
BstBAI	YACGTR	1 cut(s)	317
BstDEI	CTNAG	1 cut(s)	300
BstDSI	CCRYGG	2 cut(s)	246, 255
BstF5I	GGATG	3 cut(s)	193, 265, 430
BstMAI	GTCTC	1 cut(s)	326
BstMWI	GCNNNNNNNGC	4 cut(s)	118, 121, 124, 127
BstNI	CCWGG	1 cut(s)	230
BstSCI	CCNGG	1 cut(s)	228
BstSNI	TACGTA	1 cut(s)	317
BstV1I	GCAGC	6 cut(s)	60, 124, 127, 130, 133, 136
BstV2I	GAAGAC	1 cut(s)	358
BsuRI	GGCC	1 cut(s)	215
BtgI	CCRYGG	2 cut(s)	246, 255
BtsCI	GGATG	3 cut(s)	193, 265, 430
BtsIMutI	CAGTG	1 cut(s)	424
BveI	ACCTGC	1 cut(s)	337
Cfr13I	GGNCC	1 cut(s)	214
Csp6I	GTAC	1 cut(s)	83
CviAII	CATG	2 cut(s)	247, 256
CviJI	RGCY	6 cut(s)	51, 70, 215, 296, 310, 321
CviKI_1	RGCY	6 cut(s)	51, 70, 215, 296, 310, 321
CviQI	GTAC	1 cut(s)	83
DdeI	CTNAG	1 cut(s)	300
Eam1104I	CTCTTC	3 cut(s)	16, 37, 43
EarI	CTCTTC	3 cut(s)	16, 37, 43
Eco105I	TACGTA	1 cut(s)	317
Eco130I	CCWWGG	2 cut(s)	246, 255
EcoRII	CCWGG	1 cut(s)	228
EcoT14I	CCWWGG	2 cut(s)	246, 255
ErhI	CCWWGG	2 cut(s)	246, 255
FaeI	CATG	2 cut(s)	250, 259
FaiI	YATR	8 cut(s)	59, 105, 240, 248, 257, 325, 389, 434
FatI	CATG	2 cut(s)	246, 255
Fnu4HI	GCNGC	8 cut(s)	49, 113, 116, 119, 122, 125, 128, 202
FokI	GGATG	3 cut(s)	200, 272, 437
Fsp4HI	GCNGC	8 cut(s)	49, 113, 116, 119, 122, 125, 128, 202
GluI	GCNGC	8 cut(s)	49, 113, 116, 119, 122, 125, 128, 202
GsuI	CTGGAG	1 cut(s)	212
HaeIII	GGCC	1 cut(s)	215
Hin1II	CATG	2 cut(s)	250, 259
HincII	GTYRAC	1 cut(s)	430
HindII	GTYRAC	1 cut(s)	430
HinfI	GANTC	2 cut(s)	191, 334
HphI	GGTGA	1 cut(s)	406
Hpy166II	GTNNAC	1 cut(s)	430
Hpy8I	GTNNAC	1 cut(s)	430
HpyAV	CCTTC	1 cut(s)	228
HpyCH4III	ACNGT	1 cut(s)	100
HpyCH4IV	ACGT	1 cut(s)	316
HpyCH4V	TGCA	2 cut(s)	269, 346
HpyF10VI	GCNNNNNNNGC	4 cut(s)	118, 121, 124, 127
HpyF3I	CTNAG	1 cut(s)	300
HpySE526I	ACGT	1 cut(s)	316
Hsp92II	CATG	2 cut(s)	250, 259
LguI	GCTCTTC	1 cut(s)	16
LpnPI	CCDG	6 cut(s)	215, 242, 332, 384, 390, 430
Lsp1109I	GCAGC	6 cut(s)	60, 124, 127, 130, 133, 136
MaeII	ACGT	1 cut(s)	316
MluCI	AATT	3 cut(s)	167, 241, 380
MlyI	GAGTC	1 cut(s)	328
MmeI	TCCRAC	1 cut(s)	166
MnlI	CCTC	3 cut(s)	40, 46, 236
MseI	TTAA	1 cut(s)	44
MslI	CAYNNNNRTG	1 cut(s)	437
MspA1I	CMGCKG	2 cut(s)	127, 152
MspR9I	CCNGG	1 cut(s)	230
Mva1269I	GAATGC	1 cut(s)	11
MvaI	CCWGG	1 cut(s)	230
MwoI	GCNNNNNNNGC	4 cut(s)	118, 121, 124, 127
NcoI	CCATGG	2 cut(s)	246, 255
NlaIII	CATG	2 cut(s)	250, 259
NlaIV	GGNNCC	1 cut(s)	216
PciSI	GCTCTTC	1 cut(s)	16
PctI	GAATGC	1 cut(s)	11
PfeI	GAWTC	1 cut(s)	191
PfoI	TCCNGGA	1 cut(s)	228
PkrI	GCNGC	8 cut(s)	50, 114, 117, 120, 123, 126, 129, 203
PleI	GAGTC	1 cut(s)	328
PpsI	GAGTC	1 cut(s)	328
Ppu21I	YACGTR	1 cut(s)	317
Psp6I	CCWGG	1 cut(s)	228
PspGI	CCWGG	1 cut(s)	228
PspN4I	GGNNCC	1 cut(s)	216
PspPI	GGNCC	1 cut(s)	214
RsaI	GTAC	1 cut(s)	84
RsaNI	GTAC	1 cut(s)	83
RseI	CAYNNNNRTG	1 cut(s)	437
SapI	GCTCTTC	1 cut(s)	16
SaqAI	TTAA	1 cut(s)	44
SatI	GCNGC	8 cut(s)	49, 113, 116, 119, 122, 125, 128, 202
Sau96I	GGNCC	1 cut(s)	214
SchI	GAGTC	1 cut(s)	328
ScrFI	CCNGG	1 cut(s)	230
SetI	ASST	4 cut(s)	53, 298, 319, 351
SgeI	CNNG	9 cut(s)	84, 241, 242, 259, 268, 359, 383, 389, 429
SmiMI	CAYNNNNRTG	1 cut(s)	437
SnaBI	TACGTA	1 cut(s)	317
Sse9I	AATT	3 cut(s)	167, 241, 380
SsiI	CCGC	4 cut(s)	127, 150, 202, 422
SspI	AATATT	1 cut(s)	396
StyD4I	CCNGG	1 cut(s)	228
StyI	CCWWGG	2 cut(s)	246, 255
TaaI	ACNGT	1 cut(s)	100
TaiI	ACGT	1 cut(s)	319
TasI	AATT	3 cut(s)	167, 241, 380
TauI	GCSGC	2 cut(s)	130, 204
TfiI	GAWTC	1 cut(s)	191
Tru1I	TTAA	1 cut(s)	44
Tru9I	TTAA	1 cut(s)	44
TscAI	CASTG	1 cut(s)	424
TseI	GCWGC	6 cut(s)	48, 112, 115, 118, 121, 124
TspDTI	ATGAA	2 cut(s)	160, 204
TspRI	CASTG	1 cut(s)	424
XapI	RAATTY	2 cut(s)	167, 380
XcmI	CCANNNNNNNNNTGG	1 cut(s)	253

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.