Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0008643.1

Orthogroup ID

OG0017466

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 851

Gene Structure 851 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0008643.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 549 bp

agagaagagcttacaacgctcaggggaaaactgaatgaatgtgaagaatccataaagaaattggacaagaccattgaagatcagaatgagcttatttctgggccgagttcacctgcaattgctaaaactgacctggacagagagattgacgaaggggtggactggtggatctttgttcagagagtgatgtgtgagttggcactcacagatgttgaaactcagttgaaggaagggaaagataaacacatttgtacaattgtttttggcgctctggtcgttctgtactctgcgcttgaatgtgtccgttctcacaagaaaaaaccatggattcagaatggagaactgaaagtgaaaaatattgtttgggaaacagaactttacggtctgttgttctcttttgtgaagctaattatgtatattgtggcaatttggaagccagtggccattagagtatactttcagaccatccttttcaacctctgtgtcttcctcagcaagatgtacaagcgctcccaccgtatcaaaaaggtcactgtagatgttgtttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

182

Amino Acids

21.15

Weight (kDa)

8.25

Isoelectric Point (pI)

37.1

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0017466)

Species	Orthologous Gene IDs
rosa_multiflora	Rmu_sc0008643.1_g000001 Rmu_sc0035374.1_g000001
rosa_roxburghii	Rroxscaffold_5G00387430 Rroxscaffold_7G00201790
rosa_samantha	Rh1AG182300 Rh1DG120300 Rh2AG476600 Rh2CG462100 Rh2CG462200 Rh4CG061200 Rh4DG147800 Rh6AG151600 Rh6DG136300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	121
Acc36I	ACCTGC	1 cut(s)	121
AccI	GTMKAC	1 cut(s)	453
AclWI	GGATC	1 cut(s)	176
AcoI	YGGCCR	1 cut(s)	441
AfaI	GTAC	3 cut(s)	253, 284, 503
AfeI	AGCGCT	1 cut(s)	509
AgsI	TTSAA	5 cut(s)	77, 215, 226, 296, 475
AjnI	CCWGG	1 cut(s)	132
AluBI	AGCT	3 cut(s)	10, 91, 406
AluI	AGCT	3 cut(s)	10, 91, 406
AlwI	GGATC	1 cut(s)	176
Aor51HI	AGCGCT	1 cut(s)	509
AoxI	GGCC	2 cut(s)	101, 441
AspLEI	GCGC	3 cut(s)	269, 292, 510
AspS9I	GGNCC	1 cut(s)	101
AsuHPI	GGTGA	1 cut(s)	102
BalI	TGGCCA	1 cut(s)	443
BbsI	GAAGAC	1 cut(s)	478
BbvCI	CCTCAGC	1 cut(s)	491
BccI	CCATC	1 cut(s)	473
BciT130I	CCWGG	1 cut(s)	134
BfmI	CTRYAG	1 cut(s)	534
BfoI	RGCGCY	2 cut(s)	270, 511
BfuAI	ACCTGC	1 cut(s)	121
Bme1390I	CCNGG	1 cut(s)	134
BmgT120I	GGNCC	1 cut(s)	101
BmrFI	CCNGG	1 cut(s)	134
BpiI	GAAGAC	1 cut(s)	478
Bpu10I	CCTNAGC	2 cut(s)	20, 491
BsaJI	CCNNGG	1 cut(s)	323
BsaXI	ACNNNNNCTCC	2 cut(s)	494, 524
Bse1I	ACTGG	2 cut(s)	167, 437
BseBI	CCWGG	1 cut(s)	134
BseDI	CCNNGG	1 cut(s)	323
BseGI	GGATG	1 cut(s)	465
BseMII	CTCAG	3 cut(s)	34, 233, 505
BseNI	ACTGG	2 cut(s)	167, 437
BshFI	GGCC	2 cut(s)	103, 443
BsnI	GGCC	2 cut(s)	103, 443
Bsp1407I	TGTACA	2 cut(s)	251, 501
Bsp143I	GATC	2 cut(s)	79, 168
Bsp19I	CCATGG	1 cut(s)	323
BspANI	GGCC	2 cut(s)	103, 443
BspCNI	CTCAG	3 cut(s)	33, 232, 504
BspMI	ACCTGC	1 cut(s)	121
BspPI	GGATC	1 cut(s)	176
BsrGI	TGTACA	2 cut(s)	251, 501
BsrI	ACTGG	2 cut(s)	167, 437
BssECI	CCNNGG	1 cut(s)	323
BssMI	GATC	2 cut(s)	79, 168
BssNAI	GTATAC	1 cut(s)	454
BssT1I	CCWWGG	1 cut(s)	323
Bst1107I	GTATAC	1 cut(s)	454
Bst2UI	CCWGG	1 cut(s)	134
Bst4CI	ACNGT	3 cut(s)	383, 518, 535
BstAUI	TGTACA	2 cut(s)	251, 501
BstDEI	CTNAG	3 cut(s)	20, 219, 491
BstDSI	CCRYGG	1 cut(s)	323
BstF5I	GGATG	1 cut(s)	465
BstH2I	RGCGCY	2 cut(s)	270, 511
BstHHI	GCGC	3 cut(s)	269, 292, 510
BstKTI	GATC	2 cut(s)	82, 171
BstMBI	GATC	2 cut(s)	79, 168
BstMWI	GCNNNNNNNGC	1 cut(s)	16
BstNI	CCWGG	1 cut(s)	134
BstSCI	CCNGG	1 cut(s)	132
BstSFI	CTRYAG	1 cut(s)	534
BstV2I	GAAGAC	1 cut(s)	478
BstX2I	RGATCY	1 cut(s)	168
BstYI	RGATCY	1 cut(s)	168
BstZ17I	GTATAC	1 cut(s)	454
BsuRI	GGCC	2 cut(s)	103, 443
BtgI	CCRYGG	1 cut(s)	323
BtsCI	GGATG	1 cut(s)	465
BtsIMutI	CAGTG	2 cut(s)	444, 531
BveI	ACCTGC	1 cut(s)	121
CfoI	GCGC	3 cut(s)	269, 292, 510
Cfr13I	GGNCC	1 cut(s)	101
Csp6I	GTAC	3 cut(s)	252, 283, 502
CviAII	CATG	1 cut(s)	324
CviJI	RGCY	6 cut(s)	10, 91, 103, 406, 436, 443
CviKI_1	RGCY	6 cut(s)	10, 91, 103, 406, 436, 443
CviQI	GTAC	3 cut(s)	252, 283, 502
DdeI	CTNAG	3 cut(s)	20, 219, 491
DpnI	GATC	2 cut(s)	81, 170
DpnII	GATC	2 cut(s)	79, 168
EaeI	YGGCCR	1 cut(s)	441
Eco130I	CCWWGG	1 cut(s)	323
Eco47III	AGCGCT	1 cut(s)	509
EcoRII	CCWGG	1 cut(s)	132
EcoT14I	CCWWGG	1 cut(s)	323
ErhI	CCWWGG	1 cut(s)	323
FaeI	CATG	1 cut(s)	327
FaiI	YATR	5 cut(s)	53, 325, 413, 417, 454
FatI	CATG	1 cut(s)	323
FblI	GTMKAC	1 cut(s)	453
FokI	GGATG	1 cut(s)	452
GlaI	GCGC	3 cut(s)	268, 291, 509
HaeII	RGCGCY	2 cut(s)	270, 511
HaeIII	GGCC	2 cut(s)	103, 443
HhaI	GCGC	3 cut(s)	269, 292, 510
Hin1II	CATG	1 cut(s)	327
Hin6I	GCGC	3 cut(s)	267, 290, 508
HinP1I	GCGC	3 cut(s)	267, 290, 508
HinfI	GANTC	2 cut(s)	47, 328
HphI	GGTGA	1 cut(s)	102
Hpy166II	GTNNAC	3 cut(s)	110, 160, 454
Hpy188I	TCNGA	4 cut(s)	84, 180, 333, 462
Hpy8I	GTNNAC	3 cut(s)	110, 160, 454
HpyAV	CCTTC	3 cut(s)	146, 220, 224
HpyCH4III	ACNGT	3 cut(s)	383, 518, 535
HpyCH4V	TGCA	1 cut(s)	116
HpyF10VI	GCNNNNNNNGC	1 cut(s)	16
HpyF3I	CTNAG	3 cut(s)	20, 219, 491
Hsp92II	CATG	1 cut(s)	327
HspAI	GCGC	3 cut(s)	267, 290, 508
Kzo9I	GATC	2 cut(s)	79, 168
LmnI	GCTCC	1 cut(s)	515
LpnPI	CCDG	8 cut(s)	7, 84, 119, 126, 146, 148, 257, 450
MaeIII	GTNAC	1 cut(s)	529
MalI	GATC	2 cut(s)	81, 170
MboI	GATC	2 cut(s)	79, 168
MboII	GAAGA	4 cut(s)	17, 56, 89, 478
MfeI	CAATTG	2 cut(s)	117, 255
MflI	RGATCY	1 cut(s)	168
MlsI	TGGCCA	1 cut(s)	443
MluCI	AATT	5 cut(s)	59, 117, 255, 408, 426
MluNI	TGGCCA	1 cut(s)	443
MnlI	CCTC	2 cut(s)	488, 500
Mox20I	TGGCCA	1 cut(s)	443
MscI	TGGCCA	1 cut(s)	443
Msp20I	TGGCCA	1 cut(s)	443
MspR9I	CCNGG	1 cut(s)	134
MunI	CAATTG	2 cut(s)	117, 255
MvaI	CCWGG	1 cut(s)	134
MwoI	GCNNNNNNNGC	1 cut(s)	16
NcoI	CCATGG	1 cut(s)	323
NdeII	GATC	2 cut(s)	79, 168
NlaIII	CATG	1 cut(s)	327
NmeAIII	GCCGAG	1 cut(s)	129
NmuCI	GTSAC	1 cut(s)	529
PaqCI	CACCTGC	1 cut(s)	121
PfeI	GAWTC	2 cut(s)	47, 328
Psp6I	CCWGG	1 cut(s)	132
PspGI	CCWGG	1 cut(s)	132
PspPI	GGNCC	1 cut(s)	101
PsuI	RGATCY	1 cut(s)	168
RsaI	GTAC	3 cut(s)	253, 284, 503
RsaNI	GTAC	3 cut(s)	252, 283, 502
Sau3AI	GATC	2 cut(s)	79, 168
Sau96I	GGNCC	1 cut(s)	101
ScrFI	CCNGG	1 cut(s)	134
SetI	ASST	7 cut(s)	12, 93, 115, 135, 408, 480, 531
SfcI	CTRYAG	1 cut(s)	534
Sse9I	AATT	5 cut(s)	59, 117, 255, 408, 426
SspI	AATATT	1 cut(s)	358
StyD4I	CCNGG	1 cut(s)	132
StyI	CCWWGG	1 cut(s)	323
TaaI	ACNGT	3 cut(s)	383, 518, 535
TasI	AATT	5 cut(s)	59, 117, 255, 408, 426
TatI	WGTACW	3 cut(s)	251, 282, 501
TfiI	GAWTC	2 cut(s)	47, 328
TscAI	CASTG	2 cut(s)	444, 538
TseFI	GTSAC	1 cut(s)	529
Tsp45I	GTSAC	1 cut(s)	529
TspDTI	ATGAA	1 cut(s)	51
TspGWI	ACGGA	1 cut(s)	293
TspRI	CASTG	2 cut(s)	444, 538
XcmI	CCANNNNNNNNNTGG	1 cut(s)	58
XmiI	GTMKAC	1 cut(s)	453

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.