Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6D

Orthogroup ID

OG0017466

Physical Location & Seq

Genomic Coordinates Forward (+)

19503438 .. 19521736

Gene Structure 18299 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6DG136300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 660 bp

ATGGCAAAAAGAAAAAAAAAAAGGGATGAGAAGAAGGCTGCCACAGCTAGAGCTACCCGTACAAATGCAAGAGCTGCTTCTACAAATGTAAGAGCTGCTCATTCTGCAAATGCAAGAGCTGCTGCTACTTCAAGCTCAAGAGTTGCTCCTGCTTCAAGCTCAAGAGCTGCTCCTGCTTCAAGCTCGAAAGCAGCTGCTGCAAAAGGTACAGCTCCTGCTCTGACGGTGGCTACCGCCTATGGAGAAGAGGTCACTGACGAGCACATTAGGGAGGGCGTGGCTGCTGTGGTTGTGGAGACTTTGTTCCCGGCTCACTCCGACCCGTACAGTACGATCTCGACCCGGGAAGAAAGTAGTATTACACGTTCGTTTAGTTTTGAAGCAAAAGAAATGGTCTCAGCTCATGTGTGGCTGCTCTATATTCCATTGGTTAACTTTGCTCATCGTCAATCCTTGCCTTTTACCTGTCGAGTTACTTTGGAACATACTAGCCAAGGTTCAGCGCGCTGTAAAAGCTATGGGGTGCACCTAGTAATGCCCCAAGGTGAATATGATGACTACATGGAAGATGACTACTCCGTCTGCTCATCTAGTGAAGATGATAAGAGTAATATTTCAGACCGGAAAAAGAAAAAAGAGAAGATGAAGAAATGGAAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NB-ARC TIR

Protein Analysis

219

Amino Acids

23.88

Weight (kDa)

9.53

Isoelectric Point (pI)

47.75

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0017466)

Species	Orthologous Gene IDs
rosa_multiflora	Rmu_sc0008643.1_g000001 Rmu_sc0035374.1_g000001
rosa_roxburghii	Rroxscaffold_5G00387430 Rroxscaffold_7G00201790
rosa_samantha	Rh1AG182300 Rh1DG120300 Rh2AG476600 Rh2CG462100 Rh2CG462200 Rh4CG061200 Rh4DG147800 Rh6AG151600 Rh6DG136300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	578
AccII	CGCG	1 cut(s)	505
AciI	CCGC	1 cut(s)	234
AfaI	GTAC	4 cut(s)	61, 208, 326, 331
AflIII	ACRYGT	1 cut(s)	362
AgsI	TTSAA	4 cut(s)	132, 156, 180, 380
AloI	GAACNNNNNNTCC	2 cut(s)	287, 319
Alw21I	GWGCWC	2 cut(s)	264, 528
Alw26I	GTCTC	2 cut(s)	290, 400
Alw44I	GTGCAC	1 cut(s)	524
AlwNI	CAGNNNCTG	2 cut(s)	197, 215
Ama87I	CYCGRG	1 cut(s)	342
ApaLI	GTGCAC	1 cut(s)	524
AspLEI	GCGC	2 cut(s)	505, 507
AsuC2I	CCSGG	3 cut(s)	308, 343, 344
AsuHPI	GGTGA	1 cut(s)	557
AvaI	CYCGRG	1 cut(s)	342
BaeGI	GKGCMC	1 cut(s)	528
Bbv12I	GWGCWC	2 cut(s)	264, 528
BcnI	CCSGG	3 cut(s)	308, 343, 344
BcoDI	GTCTC	2 cut(s)	290, 400
BfaI	CTAG	4 cut(s)	48, 489, 530, 591
Bme1390I	CCNGG	3 cut(s)	308, 343, 344
BmeT110I	CYCGRG	1 cut(s)	342
BmrFI	CCNGG	3 cut(s)	308, 343, 344
BpuEI	CTTGAG	2 cut(s)	121, 145
BpuMI	CCSGG	3 cut(s)	308, 343, 344
BsaI	GGTCTC	1 cut(s)	400
BsaJI	CCNNGG	3 cut(s)	342, 493, 541
BsaWI	WCCGGW	1 cut(s)	621
BsaXI	ACNNNNNCTCC	4 cut(s)	234, 264, 287, 317
BseDI	CCNNGG	3 cut(s)	342, 493, 541
BseGI	GGATG	1 cut(s)	31
BseMII	CTCAG	1 cut(s)	411
BsePI	GCGCGC	1 cut(s)	503
BseSI	GKGCMC	1 cut(s)	528
Bsh1236I	CGCG	1 cut(s)	505
BsiHKAI	GWGCWC	2 cut(s)	264, 528
BsiHKCI	CYCGRG	1 cut(s)	342
BsiSI	CCGG	3 cut(s)	308, 343, 622
BsmAI	GTCTC	2 cut(s)	290, 400
Bso31I	GGTCTC	1 cut(s)	400
BsoBI	CYCGRG	1 cut(s)	342
Bsp1286I	GDGCHC	2 cut(s)	264, 528
Bsp143I	GATC	1 cut(s)	333
BspACI	CCGC	1 cut(s)	234
BspCNI	CTCAG	1 cut(s)	410
BspFNI	CGCG	1 cut(s)	505
BspTNI	GGTCTC	1 cut(s)	400
BssECI	CCNNGG	3 cut(s)	342, 493, 541
BssHII	GCGCGC	1 cut(s)	503
BssMI	GATC	1 cut(s)	333
BssT1I	CCWWGG	2 cut(s)	493, 541
Bst4CI	ACNGT	2 cut(s)	226, 329
Bst6I	CTCTTC	1 cut(s)	240
BstAPI	GCANNNNNTGC	3 cut(s)	74, 119, 197
BstC8I	GCNNGC	1 cut(s)	505
BstDEI	CTNAG	1 cut(s)	397
BstF5I	GGATG	1 cut(s)	31
BstFNI	CGCG	1 cut(s)	505
BstHHI	GCGC	2 cut(s)	505, 507
BstKTI	GATC	1 cut(s)	336
BstMAI	GTCTC	2 cut(s)	290, 400
BstMBI	GATC	1 cut(s)	333
BstMWI	GCNNNNNNNGC	7 cut(s)	44, 74, 104, 119, 173, 197, 513
BstSCI	CCNGG	3 cut(s)	306, 341, 342
BstSLI	GKGCMC	1 cut(s)	528
BstUI	CGCG	1 cut(s)	505
BtsCI	GGATG	1 cut(s)	31
BtsIMutI	CAGTG	1 cut(s)	252
Cac8I	GCNNGC	1 cut(s)	505
CaiI	CAGNNNCTG	2 cut(s)	197, 215
CfoI	GCGC	2 cut(s)	505, 507
Cfr9I	CCCGGG	1 cut(s)	342
Csp6I	GTAC	4 cut(s)	60, 207, 325, 330
CviAII	CATG	2 cut(s)	404, 562
CviQI	GTAC	4 cut(s)	60, 207, 325, 330
DdeI	CTNAG	1 cut(s)	397
DpnI	GATC	1 cut(s)	335
DpnII	GATC	1 cut(s)	333
DrdI	GACNNNNNNGTC	1 cut(s)	578
DseDI	GACNNNNNNGTC	1 cut(s)	578
Eam1104I	CTCTTC	1 cut(s)	240
EarI	CTCTTC	1 cut(s)	240
Eco130I	CCWWGG	2 cut(s)	493, 541
Eco31I	GGTCTC	1 cut(s)	400
Eco88I	CYCGRG	1 cut(s)	342
EcoT14I	CCWWGG	2 cut(s)	493, 541
ErhI	CCWWGG	2 cut(s)	493, 541
FaeI	CATG	2 cut(s)	407, 565
FaiI	YATR	7 cut(s)	240, 405, 420, 486, 519, 552, 563
FalI	AAGNNNNNCTT	2 cut(s)	61, 93
FatI	CATG	2 cut(s)	403, 561
FokI	GGATG	1 cut(s)	38
FspBI	CTAG	4 cut(s)	48, 489, 530, 591
GlaI	GCGC	2 cut(s)	504, 506
HapII	CCGG	3 cut(s)	308, 343, 622
HhaI	GCGC	2 cut(s)	505, 507
Hin1II	CATG	2 cut(s)	407, 565
Hin6I	GCGC	2 cut(s)	503, 505
HinP1I	GCGC	2 cut(s)	503, 505
HincII	GTYRAC	1 cut(s)	433
HindII	GTYRAC	1 cut(s)	433
HpaI	GTTAAC	1 cut(s)	433
HpaII	CCGG	3 cut(s)	308, 343, 622
HphI	GGTGA	1 cut(s)	557
Hpy166II	GTNNAC	2 cut(s)	433, 526
Hpy188I	TCNGA	3 cut(s)	222, 319, 619
Hpy188III	TCNNGA	3 cut(s)	138, 162, 337
Hpy8I	GTNNAC	2 cut(s)	433, 526
HpyAV	CCTTC	1 cut(s)	28
HpyCH4III	ACNGT	2 cut(s)	226, 329
HpyCH4IV	ACGT	1 cut(s)	364
HpyCH4V	TGCA	5 cut(s)	68, 107, 113, 200, 526
HpyF10VI	GCNNNNNNNGC	7 cut(s)	44, 74, 104, 119, 173, 197, 513
HpyF3I	CTNAG	1 cut(s)	397
HpySE526I	ACGT	1 cut(s)	364
Hsp92II	CATG	2 cut(s)	407, 565
HspAI	GCGC	2 cut(s)	503, 505
KspAI	GTTAAC	1 cut(s)	433
Kzo9I	GATC	1 cut(s)	333
LmnI	GCTCC	3 cut(s)	151, 175, 217
LpnPI	CCDG	7 cut(s)	162, 186, 228, 321, 356, 478, 635
MaeI	CTAG	4 cut(s)	48, 489, 530, 591
MaeII	ACGT	1 cut(s)	364
MaeIII	GTNAC	2 cut(s)	250, 472
MalI	GATC	1 cut(s)	335
MboI	GATC	1 cut(s)	333
MboII	GAAGA	7 cut(s)	43, 257, 359, 578, 608, 652, 658
MhlI	GDGCHC	2 cut(s)	264, 528
MmeI	TCCRAC	1 cut(s)	342
MnlI	CCTC	2 cut(s)	241, 265
MseI	TTAA	1 cut(s)	432
MspA1I	CMGCKG	1 cut(s)	194
MspI	CCGG	3 cut(s)	308, 343, 622
MspR9I	CCNGG	3 cut(s)	308, 343, 344
MvnI	CGCG	1 cut(s)	505
MwoI	GCNNNNNNNGC	7 cut(s)	44, 74, 104, 119, 173, 197, 513
NciI	CCSGG	3 cut(s)	308, 343, 344
NdeII	GATC	1 cut(s)	333
NlaIII	CATG	2 cut(s)	407, 565
NmuCI	GTSAC	1 cut(s)	250
PauI	GCGCGC	1 cut(s)	503
PsrI	GAACNNNNNNTAC	2 cut(s)	349, 381
PstNI	CAGNNNCTG	2 cut(s)	197, 215
PteI	GCGCGC	1 cut(s)	503
PvuII	CAGCTG	1 cut(s)	194
RsaI	GTAC	4 cut(s)	61, 208, 326, 331
RsaNI	GTAC	4 cut(s)	60, 207, 325, 330
SaqAI	TTAA	1 cut(s)	432
Sau3AI	GATC	1 cut(s)	333
ScrFI	CCNGG	3 cut(s)	308, 343, 344
SduI	GDGCHC	2 cut(s)	264, 528
SmaI	CCCGGG	1 cut(s)	344
SmlI	CTYRAG	2 cut(s)	136, 160
SmoI	CTYRAG	2 cut(s)	136, 160
SsiI	CCGC	1 cut(s)	234
SspI	AATATT	1 cut(s)	613
SspMI	CTAG	4 cut(s)	48, 489, 530, 591
StyD4I	CCNGG	3 cut(s)	306, 341, 342
StyI	CCWWGG	2 cut(s)	493, 541
TaaI	ACNGT	2 cut(s)	226, 329
TaiI	ACGT	1 cut(s)	367
TaqI	TCGA	3 cut(s)	185, 338, 469
Tru1I	TTAA	1 cut(s)	432
Tru9I	TTAA	1 cut(s)	432
TscAI	CASTG	1 cut(s)	259
TseFI	GTSAC	1 cut(s)	250
Tsp45I	GTSAC	1 cut(s)	250
TspDTI	ATGAA	1 cut(s)	659
TspGWI	ACGGA	1 cut(s)	568
TspMI	CCCGGG	1 cut(s)	342
TspRI	CASTG	1 cut(s)	259
VneI	GTGCAC	1 cut(s)	524
XmaI	CCCGGG	1 cut(s)	342
XspI	CTAG	4 cut(s)	48, 489, 530, 591

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.