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| Species | Orthologous Gene IDs |
|---|---|
| rosa_multiflora | Rmu_sc0008643.1_g000001 Rmu_sc0035374.1_g000001 |
| rosa_roxburghii | Rroxscaffold_5G00387430 Rroxscaffold_7G00201790 |
| rosa_samantha | Rh1AG182300 Rh1DG120300 Rh2AG476600 Rh2CG462100 Rh2CG462200 Rh4CG061200 Rh4DG147800 Rh6AG151600 Rh6DG136300 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AfaI | GTAC | 1 cut(s) | 101 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 140 |
| AgsI | TTSAA | 1 cut(s) | 175 |
| AjiI | CACGTC | 1 cut(s) | 239 |
| AjnI | CCWGG | 1 cut(s) | 206 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 62, 94 |
| AluBI | AGCT | 1 cut(s) | 213 |
| AluI | AGCT | 1 cut(s) | 213 |
| Alw21I | GWGCWC | 1 cut(s) | 39 |
| Ama87I | CYCGRG | 1 cut(s) | 117 |
| AoxI | GGCC | 1 cut(s) | 204 |
| ApeKI | GCWGC | 1 cut(s) | 5 |
| AspS9I | GGNCC | 1 cut(s) | 182 |
| AsuC2I | CCSGG | 1 cut(s) | 203 |
| AsuHPI | GGTGA | 2 cut(s) | 19, 155 |
| AvaI | CYCGRG | 1 cut(s) | 117 |
| AvaII | GGWCC | 1 cut(s) | 182 |
| Bbv12I | GWGCWC | 1 cut(s) | 39 |
| BccI | CCATC | 1 cut(s) | 8 |
| BciT130I | CCWGG | 1 cut(s) | 208 |
| BcnI | CCSGG | 1 cut(s) | 203 |
| BisI | GCNGC | 1 cut(s) | 6 |
| BlsI | GCNGC | 1 cut(s) | 7 |
| Bme1390I | CCNGG | 2 cut(s) | 203, 208 |
| Bme18I | GGWCC | 1 cut(s) | 182 |
| BmeT110I | CYCGRG | 1 cut(s) | 117 |
| BmgBI | CACGTC | 1 cut(s) | 239 |
| BmgT120I | GGNCC | 1 cut(s) | 182 |
| BmiI | GGNNCC | 2 cut(s) | 183, 200 |
| BmrFI | CCNGG | 2 cut(s) | 203, 208 |
| BmsI | GCATC | 1 cut(s) | 46 |
| BpmI | CTGGAG | 1 cut(s) | 229 |
| BpuMI | CCSGG | 1 cut(s) | 203 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 9, 39, 62, 92 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 140 |
| BseBI | CCWGG | 1 cut(s) | 208 |
| BseGI | GGATG | 1 cut(s) | 61 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 140 |
| BseRI | GAGGAG | 2 cut(s) | 33, 161 |
| BshFI | GGCC | 1 cut(s) | 206 |
| BsiHKAI | GWGCWC | 1 cut(s) | 39 |
| BsiHKCI | CYCGRG | 1 cut(s) | 117 |
| BsiSI | CCGG | 1 cut(s) | 203 |
| BslFI | GGGAC | 1 cut(s) | 195 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 140 |
| BsmFI | GGGAC | 1 cut(s) | 195 |
| BsnI | GGCC | 1 cut(s) | 206 |
| BsoBI | CYCGRG | 1 cut(s) | 117 |
| Bsp1286I | GDGCHC | 1 cut(s) | 39 |
| Bsp143I | GATC | 1 cut(s) | 157 |
| BspANI | GGCC | 1 cut(s) | 206 |
| BspLI | GGNNCC | 2 cut(s) | 183, 200 |
| BssMI | GATC | 1 cut(s) | 157 |
| Bst2UI | CCWGG | 1 cut(s) | 208 |
| Bst4CI | ACNGT | 1 cut(s) | 246 |
| BstEII | GGTNACC | 1 cut(s) | 25 |
| BstF5I | GGATG | 1 cut(s) | 61 |
| BstKTI | GATC | 1 cut(s) | 160 |
| BstMBI | GATC | 1 cut(s) | 157 |
| BstNI | CCWGG | 1 cut(s) | 208 |
| BstPI | GGTNACC | 1 cut(s) | 25 |
| BstSCI | CCNGG | 2 cut(s) | 201, 206 |
| BsuRI | GGCC | 1 cut(s) | 206 |
| BtrI | CACGTC | 1 cut(s) | 239 |
| BtsCI | GGATG | 1 cut(s) | 61 |
| Cfr13I | GGNCC | 1 cut(s) | 182 |
| Csp6I | GTAC | 1 cut(s) | 100 |
| CviJI | RGCY | 5 cut(s) | 5, 74, 206, 213, 231 |
| CviKI_1 | RGCY | 5 cut(s) | 5, 74, 206, 213, 231 |
| CviQI | GTAC | 1 cut(s) | 100 |
| DpnI | GATC | 1 cut(s) | 159 |
| DpnII | GATC | 1 cut(s) | 157 |
| Eco47I | GGWCC | 1 cut(s) | 182 |
| Eco88I | CYCGRG | 1 cut(s) | 117 |
| Eco91I | GGTNACC | 1 cut(s) | 25 |
| EcoO65I | GGTNACC | 1 cut(s) | 25 |
| EcoRII | CCWGG | 1 cut(s) | 206 |
| FaiI | YATR | 4 cut(s) | 62, 140, 168, 190 |
| FaqI | GGGAC | 1 cut(s) | 195 |
| Fnu4HI | GCNGC | 1 cut(s) | 6 |
| FokI | GGATG | 1 cut(s) | 68 |
| Fsp4HI | GCNGC | 1 cut(s) | 6 |
| GluI | GCNGC | 1 cut(s) | 6 |
| GsuI | CTGGAG | 1 cut(s) | 229 |
| HaeIII | GGCC | 1 cut(s) | 206 |
| HapII | CCGG | 1 cut(s) | 203 |
| HincII | GTYRAC | 1 cut(s) | 242 |
| HindII | GTYRAC | 1 cut(s) | 242 |
| HpaII | CCGG | 1 cut(s) | 203 |
| HphI | GGTGA | 2 cut(s) | 19, 155 |
| Hpy166II | GTNNAC | 1 cut(s) | 242 |
| Hpy188III | TCNNGA | 1 cut(s) | 112 |
| Hpy8I | GTNNAC | 1 cut(s) | 242 |
| Hpy99I | CGWCG | 1 cut(s) | 35 |
| HpyCH4III | ACNGT | 1 cut(s) | 246 |
| HpyCH4IV | ACGT | 1 cut(s) | 238 |
| HpySE526I | ACGT | 1 cut(s) | 238 |
| Kzo9I | GATC | 1 cut(s) | 157 |
| LmnI | GCTCC | 1 cut(s) | 210 |
| LpnPI | CCDG | 3 cut(s) | 193, 216, 220 |
| LweI | GCATC | 1 cut(s) | 46 |
| MaeII | ACGT | 1 cut(s) | 238 |
| MaeIII | GTNAC | 2 cut(s) | 25, 86 |
| MalI | GATC | 1 cut(s) | 159 |
| MboI | GATC | 1 cut(s) | 157 |
| MboII | GAAGA | 1 cut(s) | 152 |
| MhlI | GDGCHC | 1 cut(s) | 39 |
| MmeI | TCCRAC | 1 cut(s) | 117 |
| MnlI | CCTC | 6 cut(s) | 11, 16, 40, 64, 139, 142 |
| MspI | CCGG | 1 cut(s) | 203 |
| MspR9I | CCNGG | 2 cut(s) | 203, 208 |
| MvaI | CCWGG | 1 cut(s) | 208 |
| NciI | CCSGG | 1 cut(s) | 203 |
| NdeII | GATC | 1 cut(s) | 157 |
| NlaIV | GGNNCC | 2 cut(s) | 183, 200 |
| NmeAIII | GCCGAG | 1 cut(s) | 212 |
| NmuCI | GTSAC | 1 cut(s) | 25 |
| PkrI | GCNGC | 1 cut(s) | 7 |
| Psp6I | CCWGG | 1 cut(s) | 206 |
| PspEI | GGTNACC | 1 cut(s) | 25 |
| PspGI | CCWGG | 1 cut(s) | 206 |
| PspN4I | GGNNCC | 2 cut(s) | 183, 200 |
| PspPI | GGNCC | 1 cut(s) | 182 |
| RsaI | GTAC | 1 cut(s) | 101 |
| RsaNI | GTAC | 1 cut(s) | 100 |
| SatI | GCNGC | 1 cut(s) | 6 |
| Sau3AI | GATC | 1 cut(s) | 157 |
| Sau96I | GGNCC | 1 cut(s) | 182 |
| ScrFI | CCNGG | 2 cut(s) | 203, 208 |
| SduI | GDGCHC | 1 cut(s) | 39 |
| SetI | ASST | 4 cut(s) | 27, 136, 215, 241 |
| SfaNI | GCATC | 1 cut(s) | 46 |
| SinI | GGWCC | 1 cut(s) | 182 |
| StyD4I | CCNGG | 2 cut(s) | 201, 206 |
| TaaI | ACNGT | 1 cut(s) | 246 |
| TaiI | ACGT | 1 cut(s) | 241 |
| TaqI | TCGA | 1 cut(s) | 113 |
| TaqII | GACCGA | 1 cut(s) | 199 |
| TseFI | GTSAC | 1 cut(s) | 25 |
| TseI | GCWGC | 1 cut(s) | 5 |
| Tsp45I | GTSAC | 1 cut(s) | 25 |
| TspDTI | ATGAA | 1 cut(s) | 140 |
| VpaK11BI | GGWCC | 1 cut(s) | 182 |