Rh4DG147800

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4D
OG0017466
Physical Location & Seq
Forward (+)
29587527 .. 29590785
3259 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4DG147800.1

Sequence Viewer

Length: 216 bp
ATGGCGGCTGCCGCCTATGGAGAAGAGGTCGCTGACGAGCACATTAGGGAGGGCGTGGCTGCTGTGGTTGTGGAGACTTTGTTCCCGGCACACTCCGACCCGTACAGTACTATCTCGACCCGGGCTTGGCGTATTCCTGTTGGTCGTGGATCTACTTGGCTTGAGCATGAGCTTTGGCATGAGCGTGAGTTTGGCATAAGCGCGAGCTTGGCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

71

Amino Acids

7.84

Weight (kDa)

4.96

Isoelectric Point (pI)

26.04

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 203
AciI CCGC 2 cut(s) 5, 12
AclWI GGATC 1 cut(s) 157
AfaI GTAC 2 cut(s) 104, 109
AfiI CCNNNNNNNGG 1 cut(s) 126
AloI GAACNNNNNNTCC 2 cut(s) 65, 97
AluBI AGCT 2 cut(s) 172, 207
AluI AGCT 2 cut(s) 172, 207
Alw21I GWGCWC 1 cut(s) 42
Alw26I GTCTC 1 cut(s) 68
AlwI GGATC 1 cut(s) 157
Ama87I CYCGRG 1 cut(s) 120
ApeKI GCWGC 2 cut(s) 8, 59
AspLEI GCGC 1 cut(s) 203
AsuC2I CCSGG 3 cut(s) 86, 121, 122
AvaI CYCGRG 1 cut(s) 120
Bbv12I GWGCWC 1 cut(s) 42
BbvI GCAGC 1 cut(s) 46
BcnI CCSGG 3 cut(s) 86, 121, 122
BcoDI GTCTC 1 cut(s) 68
BisI GCNGC 4 cut(s) 6, 9, 12, 60
BlsI GCNGC 4 cut(s) 7, 10, 13, 61
BmcAI AGTACT 1 cut(s) 109
Bme1390I CCNGG 3 cut(s) 86, 121, 122
BmeT110I CYCGRG 1 cut(s) 120
BmrFI CCNGG 3 cut(s) 86, 121, 122
BpuEI CTTGAG 1 cut(s) 182
BpuMI CCSGG 3 cut(s) 86, 121, 122
BsaJI CCNNGG 1 cut(s) 120
BsaXI ACNNNNNCTCC 4 cut(s) 12, 42, 65, 95
Bsc4I CCNNNNNNNGG 1 cut(s) 126
BseDI CCNNGG 1 cut(s) 120
BseLI CCNNNNNNNGG 1 cut(s) 126
BseXI GCAGC 1 cut(s) 46
Bsh1236I CGCG 1 cut(s) 203
BsiHKAI GWGCWC 1 cut(s) 42
BsiHKCI CYCGRG 1 cut(s) 120
BsiSI CCGG 2 cut(s) 86, 121
BslI CCNNNNNNNGG 1 cut(s) 126
BsmAI GTCTC 1 cut(s) 68
BsoBI CYCGRG 1 cut(s) 120
Bsp1286I GDGCHC 1 cut(s) 42
Bsp143I GATC 1 cut(s) 149
BspACI CCGC 2 cut(s) 5, 12
BspFNI CGCG 1 cut(s) 203
BspPI GGATC 1 cut(s) 157
BssECI CCNNGG 1 cut(s) 120
BssMI GATC 1 cut(s) 149
Bst4CI ACNGT 1 cut(s) 107
Bst6I CTCTTC 1 cut(s) 18
BstC8I GCNNGC 1 cut(s) 205
BstFNI CGCG 1 cut(s) 203
BstHHI GCGC 1 cut(s) 203
BstKTI GATC 1 cut(s) 152
BstMAI GTCTC 1 cut(s) 68
BstMBI GATC 1 cut(s) 149
BstMWI GCNNNNNNNGC 2 cut(s) 11, 209
BstSCI CCNGG 3 cut(s) 84, 119, 120
BstUI CGCG 1 cut(s) 203
BstV1I GCAGC 1 cut(s) 46
BstX2I RGATCY 1 cut(s) 149
BstYI RGATCY 1 cut(s) 149
Cac8I GCNNGC 1 cut(s) 205
CfoI GCGC 1 cut(s) 203
Cfr9I CCCGGG 1 cut(s) 120
Csp6I GTAC 2 cut(s) 103, 108
CviAII CATG 3 cut(s) 167, 179, 213
CviJI RGCY 6 cut(s) 8, 59, 125, 160, 172, 207
CviKI_1 RGCY 6 cut(s) 8, 59, 125, 160, 172, 207
CviQI GTAC 2 cut(s) 103, 108
DpnI GATC 1 cut(s) 151
DpnII GATC 1 cut(s) 149
Eam1104I CTCTTC 1 cut(s) 18
EarI CTCTTC 1 cut(s) 18
Eco88I CYCGRG 1 cut(s) 120
FaeI CATG 3 cut(s) 170, 182, 216
FaiI YATR 5 cut(s) 18, 168, 180, 197, 214
FatI CATG 3 cut(s) 166, 178, 212
Fnu4HI GCNGC 4 cut(s) 6, 9, 12, 60
Fsp4HI GCNGC 4 cut(s) 6, 9, 12, 60
GlaI GCGC 1 cut(s) 202
GluI GCNGC 4 cut(s) 6, 9, 12, 60
HapII CCGG 2 cut(s) 86, 121
HhaI GCGC 1 cut(s) 203
Hin1II CATG 3 cut(s) 170, 182, 216
Hin6I GCGC 1 cut(s) 201
HinP1I GCGC 1 cut(s) 201
HpaII CCGG 2 cut(s) 86, 121
Hpy188I TCNGA 1 cut(s) 97
Hpy188III TCNNGA 1 cut(s) 115
HpyCH4III ACNGT 1 cut(s) 107
HpyF10VI GCNNNNNNNGC 2 cut(s) 11, 209
Hsp92II CATG 3 cut(s) 170, 182, 216
HspAI GCGC 1 cut(s) 201
Kzo9I GATC 1 cut(s) 149
LpnPI CCDG 3 cut(s) 99, 134, 150
Lsp1109I GCAGC 1 cut(s) 46
MalI GATC 1 cut(s) 151
MboI GATC 1 cut(s) 149
MboII GAAGA 1 cut(s) 35
MflI RGATCY 1 cut(s) 149
MhlI GDGCHC 1 cut(s) 42
MmeI TCCRAC 1 cut(s) 120
MnlI CCTC 2 cut(s) 19, 43
MslI CAYNNNNRTG 1 cut(s) 183
MspI CCGG 2 cut(s) 86, 121
MspR9I CCNGG 3 cut(s) 86, 121, 122
MvnI CGCG 1 cut(s) 203
MwoI GCNNNNNNNGC 2 cut(s) 11, 209
NciI CCSGG 3 cut(s) 86, 121, 122
NdeII GATC 1 cut(s) 149
NlaIII CATG 3 cut(s) 170, 182, 216
PkrI GCNGC 4 cut(s) 7, 10, 13, 61
PsuI RGATCY 1 cut(s) 149
RsaI GTAC 2 cut(s) 104, 109
RsaNI GTAC 2 cut(s) 103, 108
RseI CAYNNNNRTG 1 cut(s) 183
SatI GCNGC 4 cut(s) 6, 9, 12, 60
Sau3AI GATC 1 cut(s) 149
ScaI AGTACT 1 cut(s) 109
ScrFI CCNGG 3 cut(s) 86, 121, 122
SduI GDGCHC 1 cut(s) 42
SetI ASST 3 cut(s) 30, 174, 209
SmaI CCCGGG 1 cut(s) 122
SmiMI CAYNNNNRTG 1 cut(s) 183
SmlI CTYRAG 1 cut(s) 161
SmoI CTYRAG 1 cut(s) 161
SsiI CCGC 2 cut(s) 5, 12
StyD4I CCNGG 3 cut(s) 84, 119, 120
TaaI ACNGT 1 cut(s) 107
TaqI TCGA 1 cut(s) 116
TatI WGTACW 1 cut(s) 107
TauI GCSGC 2 cut(s) 8, 14
TseI GCWGC 2 cut(s) 8, 59
TspMI CCCGGG 1 cut(s) 120
XmaI CCCGGG 1 cut(s) 120
ZrmI AGTACT 1 cut(s) 109
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.