Rroxscaffold_5G00387430

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
OG0017466
Physical Location & Seq
Reverse (-)
66100399 .. 66101599
1201 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_5G00387430.1

Sequence Viewer

Length: 357 bp
ATGCATCAACTTCATTCTTTCATGCATCTACAGCGGGCTTCTCCACATTTTCGGTCCTCCGGGCAATTTCCAAGTCCTGCGAGAAGATCCTGCGTGCATGAGGACGTACGTGAACGAATTGGCACGGCTAGGGTTAGTCGGAGTCTGGAATTTCGACACGCTCTAACGGCGGCTGCGGCCTATGGAGAAGAGGTCGCCGACAAGCACATTAGGGAGGGCGTGGCTGCTGTGATTGTGGAGACTTTGTTCCCGGCTCACTCCGACCCGTACGGTACGATCTCGACACAGGTAACTTCGAGTGCATTTGGAATTGATCGGTCTATGTTTCGTTGTGCTAAGTTTTTGATTTTCTTATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

118

Amino Acids

13.2

Weight (kDa)

9.29

Isoelectric Point (pI)

63.25

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 3 cut(s) 34, 170, 176
AclWI GGATC 1 cut(s) 81
AcsI RAATTY 1 cut(s) 149
AfaI GTAC 3 cut(s) 108, 269, 274
AloI GAACNNNNNNTCC 2 cut(s) 230, 262
Alw26I GTCTC 1 cut(s) 233
AlwI GGATC 1 cut(s) 81
AoxI GGCC 1 cut(s) 177
ApeKI GCWGC 2 cut(s) 173, 224
ApoI RAATTY 1 cut(s) 149
AspS9I GGNCC 1 cut(s) 54
AsuC2I CCSGG 2 cut(s) 61, 251
AvaII GGWCC 1 cut(s) 54
BbvI GCAGC 2 cut(s) 160, 211
BceAI ACGGC 2 cut(s) 141, 183
BcnI CCSGG 2 cut(s) 61, 251
BcoDI GTCTC 1 cut(s) 233
BfaI CTAG 1 cut(s) 129
BfmI CTRYAG 1 cut(s) 29
BisI GCNGC 4 cut(s) 171, 174, 177, 225
BlsI GCNGC 4 cut(s) 172, 175, 178, 226
Bme1390I CCNGG 2 cut(s) 61, 251
Bme18I GGWCC 1 cut(s) 54
BmgT120I GGNCC 1 cut(s) 54
BmrFI CCNGG 2 cut(s) 61, 251
BmsI GCATC 2 cut(s) 13, 34
BpuMI CCSGG 2 cut(s) 61, 251
BsaAI YACGTR 1 cut(s) 110
BsaXI ACNNNNNCTCC 4 cut(s) 177, 207, 230, 260
BseXI GCAGC 2 cut(s) 160, 211
BshFI GGCC 1 cut(s) 179
BsiSI CCGG 2 cut(s) 60, 251
BsiWI CGTACG 2 cut(s) 106, 267
BsmAI GTCTC 1 cut(s) 233
BsnI GGCC 1 cut(s) 179
Bsp143I GATC 3 cut(s) 86, 276, 313
BspACI CCGC 3 cut(s) 34, 170, 176
BspANI GGCC 1 cut(s) 179
BspPI GGATC 1 cut(s) 81
BssMI GATC 3 cut(s) 86, 276, 313
Bst4CI ACNGT 1 cut(s) 272
Bst6I CTCTTC 1 cut(s) 183
BstBAI YACGTR 1 cut(s) 110
BstC8I GCNNGC 2 cut(s) 36, 95
BstDEI CTNAG 1 cut(s) 336
BstKTI GATC 3 cut(s) 89, 279, 316
BstMAI GTCTC 1 cut(s) 233
BstMBI GATC 3 cut(s) 86, 276, 313
BstMWI GCNNNNNNNGC 3 cut(s) 31, 167, 176
BstSCI CCNGG 2 cut(s) 59, 249
BstSFI CTRYAG 1 cut(s) 29
BstV1I GCAGC 2 cut(s) 160, 211
BstX2I RGATCY 1 cut(s) 86
BstYI RGATCY 1 cut(s) 86
BsuRI GGCC 1 cut(s) 179
Cac8I GCNNGC 2 cut(s) 36, 95
Cfr13I GGNCC 1 cut(s) 54
Csp6I GTAC 3 cut(s) 107, 268, 273
CviAII CATG 2 cut(s) 22, 98
CviJI RGCY 6 cut(s) 38, 128, 173, 179, 224, 254
CviKI_1 RGCY 6 cut(s) 38, 128, 173, 179, 224, 254
CviQI GTAC 3 cut(s) 107, 268, 273
DdeI CTNAG 1 cut(s) 336
DpnI GATC 3 cut(s) 88, 278, 315
DpnII GATC 3 cut(s) 86, 276, 313
Eam1104I CTCTTC 1 cut(s) 183
EarI CTCTTC 1 cut(s) 183
Eco47I GGWCC 1 cut(s) 54
EcoT22I ATGCAT 2 cut(s) 6, 27
FaeI CATG 2 cut(s) 25, 101
FaiI YATR 5 cut(s) 23, 99, 183, 323, 355
FatI CATG 2 cut(s) 21, 97
FauI CCCGC 1 cut(s) 27
Fnu4HI GCNGC 4 cut(s) 171, 174, 177, 225
Fsp4HI GCNGC 4 cut(s) 171, 174, 177, 225
FspBI CTAG 1 cut(s) 129
GluI GCNGC 4 cut(s) 171, 174, 177, 225
HaeIII GGCC 1 cut(s) 179
HapII CCGG 2 cut(s) 60, 251
Hin1II CATG 2 cut(s) 25, 101
HinfI GANTC 1 cut(s) 142
HpaII CCGG 2 cut(s) 60, 251
Hpy166II GTNNAC 1 cut(s) 113
Hpy188I TCNGA 2 cut(s) 141, 262
Hpy188III TCNNGA 2 cut(s) 146, 280
Hpy8I GTNNAC 1 cut(s) 113
HpyCH4III ACNGT 1 cut(s) 272
HpyCH4IV ACGT 2 cut(s) 105, 109
HpyCH4V TGCA 4 cut(s) 4, 25, 97, 302
HpyF10VI GCNNNNNNNGC 3 cut(s) 31, 167, 176
HpyF3I CTNAG 1 cut(s) 336
HpySE526I ACGT 2 cut(s) 105, 109
Hsp92II CATG 2 cut(s) 25, 101
Kzo9I GATC 3 cut(s) 86, 276, 313
LpnPI CCDG 6 cut(s) 73, 90, 103, 131, 264, 272
Lsp1109I GCAGC 2 cut(s) 160, 211
LweI GCATC 2 cut(s) 13, 34
MaeI CTAG 1 cut(s) 129
MaeII ACGT 2 cut(s) 105, 109
MaeIII GTNAC 1 cut(s) 289
MalI GATC 3 cut(s) 88, 278, 315
MboI GATC 3 cut(s) 86, 276, 313
MboII GAAGA 2 cut(s) 96, 200
MflI RGATCY 1 cut(s) 86
MluCI AATT 4 cut(s) 65, 117, 149, 309
MlyI GAGTC 1 cut(s) 151
MmeI TCCRAC 2 cut(s) 119, 285
MnlI CCTC 4 cut(s) 67, 94, 184, 208
Mph1103I ATGCAT 2 cut(s) 6, 27
MspA1I CMGCKG 1 cut(s) 34
MspI CCGG 2 cut(s) 60, 251
MspR9I CCNGG 2 cut(s) 61, 251
MwoI GCNNNNNNNGC 3 cut(s) 31, 167, 176
NciI CCSGG 2 cut(s) 61, 251
NdeII GATC 3 cut(s) 86, 276, 313
NlaIII CATG 2 cut(s) 25, 101
NsiI ATGCAT 2 cut(s) 6, 27
Pfl23II CGTACG 2 cut(s) 106, 267
PkrI GCNGC 4 cut(s) 172, 175, 178, 226
PleI GAGTC 1 cut(s) 150
PpsI GAGTC 1 cut(s) 150
Ppu21I YACGTR 1 cut(s) 110
PspLI CGTACG 2 cut(s) 106, 267
PspPI GGNCC 1 cut(s) 54
PsuI RGATCY 1 cut(s) 86
RsaI GTAC 3 cut(s) 108, 269, 274
RsaNI GTAC 3 cut(s) 107, 268, 273
SatI GCNGC 4 cut(s) 171, 174, 177, 225
Sau3AI GATC 3 cut(s) 86, 276, 313
Sau96I GGNCC 1 cut(s) 54
SchI GAGTC 1 cut(s) 151
ScrFI CCNGG 2 cut(s) 61, 251
SetI ASST 4 cut(s) 108, 112, 195, 291
SfaNI GCATC 2 cut(s) 13, 34
SfcI CTRYAG 1 cut(s) 29
SinI GGWCC 1 cut(s) 54
Sse9I AATT 4 cut(s) 65, 117, 149, 309
SsiI CCGC 3 cut(s) 34, 170, 176
SspMI CTAG 1 cut(s) 129
StyD4I CCNGG 2 cut(s) 59, 249
TaaI ACNGT 1 cut(s) 272
TaiI ACGT 2 cut(s) 108, 112
TaqI TCGA 3 cut(s) 154, 281, 296
TaqII GACCGA 2 cut(s) 42, 306
TasI AATT 4 cut(s) 65, 117, 149, 309
TauI GCSGC 2 cut(s) 173, 179
TseI GCWGC 2 cut(s) 173, 224
TspDTI ATGAA 1 cut(s) 10
VpaK11BI GGWCC 1 cut(s) 54
XapI RAATTY 1 cut(s) 149
XspI CTAG 1 cut(s) 129
Zsp2I ATGCAT 2 cut(s) 6, 27
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.