Rh4CG061200

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4C
OG0017466
Physical Location & Seq
Forward (+)
11647170 .. 11654276
7107 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4CG061200.1

Sequence Viewer

Length: 300 bp
ATGAGGACATACGTGAACAAATTGGTGCGGCTGGGGTTAGTCGGAGTCCTGGATTTTCAGCAGGCTCTGACGGAGGCTGCCGCCTATGGAGAAGAGGTCGTCGACGAGCACATTAGGGAGGGCGTGGCTGTTGTGGTTGTGGAGACTTTGTTCCTGACTCACTCCAACCAGTACAATACGATCTTGACCCAGAGGCCCGTGGCGTCGAGCTGTGAGGTCAAGTTTGGTGCTACAGGAGGATCGGATCTTGTGGTTGTTGTGTCTCACAAGGTCTGGGCGGCATCGGAACCTGTGTTATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

99

Amino Acids

10.73

Weight (kDa)

5.2

Isoelectric Point (pI)

29.8

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 102
AciI CCGC 3 cut(s) 28, 81, 278
AclWI GGATC 2 cut(s) 247, 252
AcyI GRCGYC 1 cut(s) 203
AfaI GTAC 1 cut(s) 173
AjnI CCWGG 1 cut(s) 48
AloI GAACNNNNNNTCC 2 cut(s) 134, 166
AluBI AGCT 1 cut(s) 210
AluI AGCT 1 cut(s) 210
Alw21I GWGCWC 1 cut(s) 111
Alw26I GTCTC 2 cut(s) 137, 267
AlwI GGATC 2 cut(s) 247, 252
AlwNI CAGNNNCTG 1 cut(s) 67
AoxI GGCC 1 cut(s) 194
ApeKI GCWGC 1 cut(s) 77
AspS9I GGNCC 1 cut(s) 195
Bbv12I GWGCWC 1 cut(s) 111
BbvI GCAGC 1 cut(s) 64
BciT130I CCWGG 1 cut(s) 50
BcoDI GTCTC 2 cut(s) 137, 267
BfmI CTRYAG 1 cut(s) 231
BisI GCNGC 4 cut(s) 29, 78, 81, 279
BlsI GCNGC 4 cut(s) 30, 79, 82, 280
Bme1390I CCNGG 1 cut(s) 50
BmgT120I GGNCC 1 cut(s) 195
BmiI GGNNCC 1 cut(s) 288
BmrFI CCNGG 1 cut(s) 50
BmsI GCATC 1 cut(s) 290
BsaAI YACGTR 1 cut(s) 13
BsaHI GRCGYC 1 cut(s) 203
BsaJI CCNNGG 1 cut(s) 198
BsaXI ACNNNNNCTCC 4 cut(s) 81, 111, 134, 164
Bse1I ACTGG 1 cut(s) 169
BseBI CCWGG 1 cut(s) 50
BseDI CCNNGG 1 cut(s) 198
BseNI ACTGG 1 cut(s) 169
BseXI GCAGC 1 cut(s) 64
BseYI CCCAGC 1 cut(s) 31
BshFI GGCC 1 cut(s) 196
BsiHKAI GWGCWC 1 cut(s) 111
BsmAI GTCTC 2 cut(s) 137, 267
BsnI GGCC 1 cut(s) 196
Bsp1286I GDGCHC 1 cut(s) 111
Bsp143I GATC 3 cut(s) 180, 239, 244
BspACI CCGC 3 cut(s) 28, 81, 278
BspANI GGCC 1 cut(s) 196
BspLI GGNNCC 1 cut(s) 288
BspPI GGATC 2 cut(s) 247, 252
BsrI ACTGG 1 cut(s) 169
BssECI CCNNGG 1 cut(s) 198
BssMI GATC 3 cut(s) 180, 239, 244
BssNI GRCGYC 1 cut(s) 203
Bst2UI CCWGG 1 cut(s) 50
Bst6I CTCTTC 1 cut(s) 87
BstACI GRCGYC 1 cut(s) 203
BstBAI YACGTR 1 cut(s) 13
BstC8I GCNNGC 1 cut(s) 63
BstDSI CCRYGG 1 cut(s) 198
BstKTI GATC 3 cut(s) 183, 242, 247
BstMAI GTCTC 2 cut(s) 137, 267
BstMBI GATC 3 cut(s) 180, 239, 244
BstNI CCWGG 1 cut(s) 50
BstSCI CCNGG 1 cut(s) 48
BstSFI CTRYAG 1 cut(s) 231
BstV1I GCAGC 1 cut(s) 64
BstX2I RGATCY 1 cut(s) 244
BstYI RGATCY 1 cut(s) 244
BsuRI GGCC 1 cut(s) 196
BtgI CCRYGG 1 cut(s) 198
Cac8I GCNNGC 1 cut(s) 63
CaiI CAGNNNCTG 1 cut(s) 67
Cfr13I GGNCC 1 cut(s) 195
CseI GACGC 1 cut(s) 192
Csp6I GTAC 1 cut(s) 172
CviJI RGCY 6 cut(s) 31, 65, 77, 128, 196, 210
CviKI_1 RGCY 6 cut(s) 31, 65, 77, 128, 196, 210
CviQI GTAC 1 cut(s) 172
DpnI GATC 3 cut(s) 182, 241, 246
DpnII GATC 3 cut(s) 180, 239, 244
Eam1104I CTCTTC 1 cut(s) 87
EarI CTCTTC 1 cut(s) 87
EcoRII CCWGG 1 cut(s) 48
FaiI YATR 3 cut(s) 10, 87, 298
FblI GTMKAC 1 cut(s) 102
Fnu4HI GCNGC 4 cut(s) 29, 78, 81, 279
Fsp4HI GCNGC 4 cut(s) 29, 78, 81, 279
GluI GCNGC 4 cut(s) 29, 78, 81, 279
GsaI CCCAGC 1 cut(s) 35
HaeIII GGCC 1 cut(s) 196
HgaI GACGC 1 cut(s) 192
Hin1I GRCGYC 1 cut(s) 203
HincII GTYRAC 1 cut(s) 103
HindII GTYRAC 1 cut(s) 103
HinfI GANTC 2 cut(s) 45, 157
Hpy166II GTNNAC 2 cut(s) 16, 103
Hpy188I TCNGA 4 cut(s) 44, 69, 244, 286
Hpy188III TCNNGA 2 cut(s) 154, 184
Hpy8I GTNNAC 2 cut(s) 16, 103
Hpy99I CGWCG 3 cut(s) 104, 107, 208
HpyCH4IV ACGT 1 cut(s) 12
HpySE526I ACGT 1 cut(s) 12
Hsp92I GRCGYC 1 cut(s) 203
Kzo9I GATC 3 cut(s) 180, 239, 244
LpnPI CCDG 9 cut(s) 17, 35, 47, 62, 167, 182, 203, 219, 259
Lsp1109I GCAGC 1 cut(s) 64
LweI GCATC 1 cut(s) 290
MaeII ACGT 1 cut(s) 12
MalI GATC 3 cut(s) 182, 241, 246
MboI GATC 3 cut(s) 180, 239, 244
MboII GAAGA 1 cut(s) 104
MflI RGATCY 1 cut(s) 244
MhlI GDGCHC 1 cut(s) 111
MluCI AATT 1 cut(s) 20
MlyI GAGTC 2 cut(s) 54, 151
MmeI TCCRAC 2 cut(s) 22, 189
MnlI CCTC 6 cut(s) 67, 88, 112, 186, 208, 230
MspR9I CCNGG 1 cut(s) 50
MvaI CCWGG 1 cut(s) 50
NdeII GATC 3 cut(s) 180, 239, 244
NlaIV GGNNCC 1 cut(s) 288
PfoI TCCNGGA 1 cut(s) 48
PkrI GCNGC 4 cut(s) 30, 79, 82, 280
PleI GAGTC 2 cut(s) 53, 151
PpsI GAGTC 2 cut(s) 53, 151
Ppu21I YACGTR 1 cut(s) 13
Psp6I CCWGG 1 cut(s) 48
PspFI CCCAGC 1 cut(s) 31
PspGI CCWGG 1 cut(s) 48
PspN4I GGNNCC 1 cut(s) 288
PspPI GGNCC 1 cut(s) 195
PstNI CAGNNNCTG 1 cut(s) 67
PsuI RGATCY 1 cut(s) 244
RsaI GTAC 1 cut(s) 173
RsaNI GTAC 1 cut(s) 172
SalI GTCGAC 1 cut(s) 101
SatI GCNGC 4 cut(s) 29, 78, 81, 279
Sau3AI GATC 3 cut(s) 180, 239, 244
Sau96I GGNCC 1 cut(s) 195
SchI GAGTC 2 cut(s) 54, 151
ScrFI CCNGG 1 cut(s) 50
SduI GDGCHC 1 cut(s) 111
SetI ASST 6 cut(s) 15, 99, 212, 219, 273, 292
SfaNI GCATC 1 cut(s) 290
SfcI CTRYAG 1 cut(s) 231
SgrDI CGTCGACG 1 cut(s) 101
Sse9I AATT 1 cut(s) 20
SsiI CCGC 3 cut(s) 28, 81, 278
StyD4I CCNGG 1 cut(s) 48
TaiI ACGT 1 cut(s) 15
TaqI TCGA 2 cut(s) 102, 206
TasI AATT 1 cut(s) 20
TatI WGTACW 1 cut(s) 171
TauI GCSGC 3 cut(s) 31, 83, 281
TseI GCWGC 1 cut(s) 77
TspGWI ACGGA 1 cut(s) 86
XmiI GTMKAC 1 cut(s) 102
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.