Rh1DG120300

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1D
OG0017466
Physical Location & Seq
Reverse (-)
21958742 .. 21959551
810 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1DG120300.1

Sequence Viewer

Length: 810 bp
ATGAAGGGACAACTGGACACTGTAGGCCAGCATGTTGGGCACAAGCAAGTAGAAGGATGTACATCTAAGTTGAAGAACCAGGATGTTCAGCTTGCAGAGCTCAAGGGGAAACTGGATGAACAAGGAGCCATGAAGGGACAACTGGACGCTGTAGGCCACCGTCTTGTTGATGAAGGCACATCTAAACTGAACAACCAGAAAGAAGAGCTGTCTATTCTCAAGGAAAAACTGAAAGAACGTGATGAAGTCATAATGAAATTGAATGGGATCATTCAAGGCCAAGAGAAAATCATTGATGATCAGAAAAAGCTGATTTCTGAGATGAGTTCATCTGCAATTACTGTAACTGTTGAAGCACCTACTGAAACTGTTGAAGAACCTGCAATTGCTGAAACTGTTCAAGAGATGATCGAAAGAGAGGTAGACTGGTATATCTTTACAATGAGAGTGATAGCTGAGGTGGGACTCACAGCTGTTGATGCTAATATGAAGCGAGGGAGAGATAAATTCATTTGCACAATTGTGGTGGCTGCTGTGGTCTTTGGGTACAATGTGCTTGAATGTTTCCGTTCTCACGGAAGAAAACCATGGGTTCAAAATGGAAAACTGAAAGTGCAAAACATCATTTGGGAAACAGAAATTTACGGTCTACTGACCTCTTTTCTGCAGCTGGCCGTGTATATTGTGGCAATTTGGCAGCCGATTGTCCTCCGTATCTACTTCCAGACTTGCCTTTTCAACCTCTGTGTCTTCCTCGGCAAGATGTACAAGCGCTCCCACCGTATCAAAAAGGTTAATGCTGATGTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

269

Amino Acids

30.51

Weight (kDa)

7.62

Isoelectric Point (pI)

26.15

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 388
AccI GTMKAC 2 cut(s) 423, 649
AclWI GGATC 1 cut(s) 275
AcoI YGGCCR 1 cut(s) 672
AcsI RAATTY 2 cut(s) 506, 639
AfaI GTAC 3 cut(s) 61, 548, 767
AfeI AGCGCT 1 cut(s) 773
AgsI TTSAA 9 cut(s) 73, 262, 275, 353, 374, 401, 560, 596, 739
AjnI CCWGG 1 cut(s) 78
AleI CACNNNNGTG 1 cut(s) 521
AluBI AGCT 7 cut(s) 91, 100, 208, 310, 455, 473, 670
AluI AGCT 7 cut(s) 91, 100, 208, 310, 455, 473, 670
Alw21I GWGCWC 1 cut(s) 102
AlwI GGATC 1 cut(s) 275
Aor51HI AGCGCT 1 cut(s) 773
AoxI GGCC 4 cut(s) 25, 154, 277, 672
ApeKI GCWGC 3 cut(s) 530, 667, 697
ApoI RAATTY 2 cut(s) 506, 639
Asp700I GAANNNNTTC 1 cut(s) 396
AspLEI GCGC 1 cut(s) 774
BaeGI GKGCMC 1 cut(s) 42
BanII GRGCYC 1 cut(s) 102
BbsI GAAGAC 1 cut(s) 742
Bbv12I GWGCWC 1 cut(s) 102
BbvCI CCTCAGC 1 cut(s) 456
BbvI GCAGC 3 cut(s) 517, 679, 709
BceAI ACGGC 1 cut(s) 659
BciT130I CCWGG 1 cut(s) 80
BclI TGATCA 1 cut(s) 298
BfmI CTRYAG 3 cut(s) 21, 150, 665
BfoI RGCGCY 1 cut(s) 775
BfuAI ACCTGC 1 cut(s) 388
BisI GCNGC 3 cut(s) 531, 668, 698
BlsI GCNGC 3 cut(s) 532, 669, 699
Bme1390I CCNGG 1 cut(s) 80
BmiI GGNNCC 1 cut(s) 127
BmrFI CCNGG 1 cut(s) 80
BmsI GCATC 1 cut(s) 469
BpiI GAAGAC 1 cut(s) 742
Bpu10I CCTNAGC 1 cut(s) 456
BpuEI CTTGAG 2 cut(s) 86, 203
BsaBI GATNNNNATC 1 cut(s) 61
BsaJI CCNNGG 2 cut(s) 587, 754
BsaXI ACNNNNNCTCC 2 cut(s) 758, 788
Bse1I ACTGG 4 cut(s) 18, 117, 147, 431
Bse8I GATNNNNATC 1 cut(s) 61
BseBI CCWGG 1 cut(s) 80
BseDI CCNNGG 2 cut(s) 587, 754
BseGI GGATG 3 cut(s) 62, 88, 121
BseJI GATNNNNATC 1 cut(s) 61
BseMII CTCAG 2 cut(s) 309, 447
BseNI ACTGG 4 cut(s) 18, 117, 147, 431
BseSI GKGCMC 1 cut(s) 42
BseXI GCAGC 3 cut(s) 517, 679, 709
BshFI GGCC 4 cut(s) 27, 156, 279, 674
BsiHKAI GWGCWC 1 cut(s) 102
BslFI GGGAC 3 cut(s) 21, 150, 477
BsmFI GGGAC 3 cut(s) 21, 150, 477
BsnI GGCC 4 cut(s) 27, 156, 279, 674
Bsp1286I GDGCHC 2 cut(s) 42, 102
Bsp1407I TGTACA 2 cut(s) 59, 765
Bsp143I GATC 3 cut(s) 267, 298, 408
Bsp19I CCATGG 1 cut(s) 587
BspANI GGCC 4 cut(s) 27, 156, 279, 674
BspCNI CTCAG 2 cut(s) 310, 448
BspLI GGNNCC 1 cut(s) 127
BspMAI CTGCAG 1 cut(s) 669
BspMI ACCTGC 1 cut(s) 388
BspPI GGATC 1 cut(s) 275
BspQI GCTCTTC 1 cut(s) 198
BsrGI TGTACA 2 cut(s) 59, 765
BsrI ACTGG 4 cut(s) 18, 117, 147, 431
BssECI CCNNGG 2 cut(s) 587, 754
BssMI GATC 3 cut(s) 267, 298, 408
BssT1I CCWWGG 1 cut(s) 587
Bst2UI CCWGG 1 cut(s) 80
Bst4CI ACNGT 8 cut(s) 22, 161, 343, 349, 370, 397, 647, 782
Bst6I CTCTTC 1 cut(s) 198
BstAUI TGTACA 2 cut(s) 59, 765
BstC8I GCNNGC 3 cut(s) 29, 93, 672
BstDEI CTNAG 3 cut(s) 66, 318, 456
BstDSI CCRYGG 1 cut(s) 587
BstF5I GGATG 3 cut(s) 62, 88, 121
BstH2I RGCGCY 1 cut(s) 775
BstHHI GCGC 1 cut(s) 774
BstKTI GATC 3 cut(s) 270, 301, 411
BstMBI GATC 3 cut(s) 267, 298, 408
BstMWI GCNNNNNNNGC 3 cut(s) 37, 97, 479
BstNI CCWGG 1 cut(s) 80
BstNSI RCATGY 1 cut(s) 35
BstSCI CCNGG 1 cut(s) 78
BstSFI CTRYAG 3 cut(s) 21, 150, 665
BstSLI GKGCMC 1 cut(s) 42
BstV1I GCAGC 3 cut(s) 517, 679, 709
BstV2I GAAGAC 1 cut(s) 742
BstXI CCANNNNNNTGG 1 cut(s) 35
BsuRI GGCC 4 cut(s) 27, 156, 279, 674
BtgI CCRYGG 1 cut(s) 587
BtsCI GGATG 3 cut(s) 62, 88, 121
BtsIMutI CAGTG 1 cut(s) 18
BveI ACCTGC 1 cut(s) 388
Cac8I GCNNGC 3 cut(s) 29, 93, 672
CfoI GCGC 1 cut(s) 774
CseI GACGC 1 cut(s) 155
Csp6I GTAC 3 cut(s) 60, 547, 766
CspCI CAANNNNNGTGG 2 cut(s) 507, 542
CviAII CATG 3 cut(s) 32, 130, 588
CviQI GTAC 3 cut(s) 60, 547, 766
DdeI CTNAG 3 cut(s) 66, 318, 456
DpnI GATC 3 cut(s) 269, 300, 410
DpnII GATC 3 cut(s) 267, 298, 408
EaeI YGGCCR 1 cut(s) 672
Eam1104I CTCTTC 1 cut(s) 198
EarI CTCTTC 1 cut(s) 198
Ecl136II GAGCTC 1 cut(s) 100
Eco130I CCWWGG 1 cut(s) 587
Eco24I GRGCYC 1 cut(s) 102
Eco47III AGCGCT 1 cut(s) 773
Eco53kI GAGCTC 1 cut(s) 100
EcoICRI GAGCTC 1 cut(s) 100
EcoRII CCWGG 1 cut(s) 78
EcoT14I CCWWGG 1 cut(s) 587
EcoT38I GRGCYC 1 cut(s) 102
ErhI CCWWGG 1 cut(s) 587
FaeI CATG 3 cut(s) 35, 133, 591
FaiI YATR 7 cut(s) 33, 131, 251, 432, 488, 589, 681
FaqI GGGAC 3 cut(s) 21, 150, 477
FatI CATG 3 cut(s) 31, 129, 587
FbaI TGATCA 1 cut(s) 298
FblI GTMKAC 2 cut(s) 423, 649
Fnu4HI GCNGC 3 cut(s) 531, 668, 698
FokI GGATG 3 cut(s) 69, 95, 128
FriOI GRGCYC 1 cut(s) 102
Fsp4HI GCNGC 3 cut(s) 531, 668, 698
GlaI GCGC 1 cut(s) 773
GluI GCNGC 3 cut(s) 531, 668, 698
HaeII RGCGCY 1 cut(s) 775
HaeIII GGCC 4 cut(s) 27, 156, 279, 674
HgaI GACGC 1 cut(s) 155
HhaI GCGC 1 cut(s) 774
Hin1II CATG 3 cut(s) 35, 133, 591
Hin6I GCGC 1 cut(s) 772
HinP1I GCGC 1 cut(s) 772
HinfI GANTC 1 cut(s) 465
Hpy166II GTNNAC 2 cut(s) 424, 650
Hpy188I TCNGA 2 cut(s) 303, 319
Hpy188III TCNNGA 2 cut(s) 401, 724
Hpy8I GTNNAC 2 cut(s) 424, 650
HpyAV CCTTC 3 cut(s) 47, 127, 167
HpyCH4III ACNGT 8 cut(s) 22, 161, 343, 349, 370, 397, 647, 782
HpyCH4IV ACGT 1 cut(s) 238
HpyCH4V TGCA 6 cut(s) 95, 335, 383, 516, 616, 667
HpyF10VI GCNNNNNNNGC 3 cut(s) 37, 97, 479
HpyF3I CTNAG 3 cut(s) 66, 318, 456
HpySE526I ACGT 1 cut(s) 238
Hsp92II CATG 3 cut(s) 35, 133, 591
HspAI GCGC 1 cut(s) 772
Ksp22I TGATCA 1 cut(s) 298
Kzo9I GATC 3 cut(s) 267, 298, 408
LguI GCTCTTC 1 cut(s) 198
LmnI GCTCC 2 cut(s) 125, 779
Lsp1109I GCAGC 3 cut(s) 517, 679, 709
LweI GCATC 1 cut(s) 469
MaeII ACGT 1 cut(s) 238
MaeIII GTNAC 1 cut(s) 343
MalI GATC 3 cut(s) 269, 300, 410
MboI GATC 3 cut(s) 267, 298, 408
MboII GAAGA 5 cut(s) 85, 215, 386, 591, 742
MfeI CAATTG 2 cut(s) 384, 519
MhlI GDGCHC 2 cut(s) 42, 102
MluCI AATT 7 cut(s) 257, 336, 384, 506, 519, 639, 690
MlyI GAGTC 1 cut(s) 459
MnlI CCTC 7 cut(s) 412, 451, 488, 667, 719, 752, 764
MroXI GAANNNNTTC 1 cut(s) 396
MseI TTAA 1 cut(s) 795
MslI CAYNNNNRTG 1 cut(s) 521
MspA1I CMGCKG 2 cut(s) 473, 670
MspR9I CCNGG 1 cut(s) 80
MunI CAATTG 2 cut(s) 384, 519
MvaI CCWGG 1 cut(s) 80
MwoI GCNNNNNNNGC 3 cut(s) 37, 97, 479
NcoI CCATGG 1 cut(s) 587
NdeII GATC 3 cut(s) 267, 298, 408
NlaIII CATG 3 cut(s) 35, 133, 591
NlaIV GGNNCC 1 cut(s) 127
NmeAIII GCCGAG 1 cut(s) 735
NspI RCATGY 1 cut(s) 35
OliI CACNNNNGTG 1 cut(s) 521
PciSI GCTCTTC 1 cut(s) 198
PdmI GAANNNNTTC 1 cut(s) 396
PkrI GCNGC 3 cut(s) 532, 669, 699
PleI GAGTC 1 cut(s) 459
PpsI GAGTC 1 cut(s) 459
Psp124BI GAGCTC 1 cut(s) 102
Psp6I CCWGG 1 cut(s) 78
PspGI CCWGG 1 cut(s) 78
PspN4I GGNNCC 1 cut(s) 127
PstI CTGCAG 1 cut(s) 669
PvuII CAGCTG 2 cut(s) 473, 670
RsaI GTAC 3 cut(s) 61, 548, 767
RsaNI GTAC 3 cut(s) 60, 547, 766
RseI CAYNNNNRTG 1 cut(s) 521
SacI GAGCTC 1 cut(s) 102
SapI GCTCTTC 1 cut(s) 198
SaqAI TTAA 1 cut(s) 795
SatI GCNGC 3 cut(s) 531, 668, 698
Sau3AI GATC 3 cut(s) 267, 298, 408
SchI GAGTC 1 cut(s) 459
ScrFI CCNGG 1 cut(s) 80
SduI GDGCHC 2 cut(s) 42, 102
SfaNI GCATC 1 cut(s) 469
SfcI CTRYAG 3 cut(s) 21, 150, 665
SmiMI CAYNNNNRTG 1 cut(s) 521
SmlI CTYRAG 2 cut(s) 101, 218
SmoI CTYRAG 2 cut(s) 101, 218
Sse9I AATT 7 cut(s) 257, 336, 384, 506, 519, 639, 690
SstI GAGCTC 1 cut(s) 102
StyD4I CCNGG 1 cut(s) 78
StyI CCWWGG 1 cut(s) 587
TaaI ACNGT 8 cut(s) 22, 161, 343, 349, 370, 397, 647, 782
TaiI ACGT 1 cut(s) 241
TaqI TCGA 1 cut(s) 411
TasI AATT 7 cut(s) 257, 336, 384, 506, 519, 639, 690
TatI WGTACW 2 cut(s) 59, 765
Tru1I TTAA 1 cut(s) 795
Tru9I TTAA 1 cut(s) 795
TscAI CASTG 1 cut(s) 25
TseI GCWGC 3 cut(s) 530, 667, 697
TspDTI ATGAA 9 cut(s) 17, 132, 146, 186, 258, 269, 318, 499, 503
TspGWI ACGGA 3 cut(s) 557, 591, 701
TspRI CASTG 1 cut(s) 25
XapI RAATTY 2 cut(s) 506, 639
XceI RCATGY 1 cut(s) 35
XmiI GTMKAC 2 cut(s) 423, 649
XmnI GAANNNNTTC 1 cut(s) 396
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.