Rh2CG462100

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2C
OG0017466
Physical Location & Seq
Reverse (-)
62549234 .. 62553109
3876 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2CG462100.1

Sequence Viewer

Length: 285 bp
ATGTATGCTCGTAGTACAAATCACTCAACTATTGAAGATGATGAGCTCCCAGAATACCTTGGTGATGGAGCTCTGACGGCGGCTGCCGCCTATGGAGAAGAGGTCGCCAACGAACACATTAGGGAGGGCGTGGCTGCTGTGGTTGTGGAGACTTTGTTCCCAGCTCACTCCGACCCGTACAGTATGATCTCAACCCGAGTAACTTCGGCTGCATTTGGAATTGATCGAGAGCAAGCAATTGAAGCGGTTTTCAATGTTGGTGAGAGCAGCTTTCGAAGTTTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

94

Amino Acids

10.12

Weight (kDa)

4.34

Isoelectric Point (pI)

47.74

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 3 cut(s) 80, 87, 245
AfaI GTAC 2 cut(s) 16, 179
AgsI TTSAA 3 cut(s) 35, 242, 253
AloI GAACNNNNNNTCC 2 cut(s) 140, 172
AluBI AGCT 4 cut(s) 46, 71, 164, 270
AluI AGCT 4 cut(s) 46, 71, 164, 270
Alw21I GWGCWC 2 cut(s) 48, 73
Alw26I GTCTC 1 cut(s) 143
Ama87I CYCGRG 1 cut(s) 195
ApeKI GCWGC 4 cut(s) 83, 134, 209, 267
AsuHPI GGTGA 2 cut(s) 74, 272
AsuII TTCGAA 1 cut(s) 274
AvaI CYCGRG 1 cut(s) 195
BanII GRGCYC 2 cut(s) 48, 73
Bbv12I GWGCWC 2 cut(s) 48, 73
BbvI GCAGC 4 cut(s) 70, 121, 196, 279
BccI CCATC 1 cut(s) 59
BceAI ACGGC 1 cut(s) 93
BcoDI GTCTC 1 cut(s) 143
BisI GCNGC 6 cut(s) 81, 84, 87, 135, 210, 268
BlsI GCNGC 6 cut(s) 82, 85, 88, 136, 211, 269
BmeT110I CYCGRG 1 cut(s) 195
Bpu14I TTCGAA 1 cut(s) 274
BsaJI CCNNGG 1 cut(s) 58
BsaXI ACNNNNNCTCC 4 cut(s) 87, 117, 140, 170
BseDI CCNNGG 1 cut(s) 58
BseXI GCAGC 4 cut(s) 70, 121, 196, 279
BseYI CCCAGC 1 cut(s) 160
BsiHKAI GWGCWC 2 cut(s) 48, 73
BsiHKCI CYCGRG 1 cut(s) 195
BsmAI GTCTC 1 cut(s) 143
BsoBI CYCGRG 1 cut(s) 195
Bsp119I TTCGAA 1 cut(s) 274
Bsp1286I GDGCHC 2 cut(s) 48, 73
Bsp143I GATC 2 cut(s) 186, 223
BspACI CCGC 3 cut(s) 80, 87, 245
BspT104I TTCGAA 1 cut(s) 274
BssECI CCNNGG 1 cut(s) 58
BssMI GATC 2 cut(s) 186, 223
BssT1I CCWWGG 1 cut(s) 58
Bst4CI ACNGT 1 cut(s) 182
Bst6I CTCTTC 1 cut(s) 93
BstBI TTCGAA 1 cut(s) 274
BstC8I GCNNGC 1 cut(s) 234
BstKTI GATC 2 cut(s) 189, 226
BstMAI GTCTC 1 cut(s) 143
BstMBI GATC 2 cut(s) 186, 223
BstMWI GCNNNNNNNGC 3 cut(s) 77, 86, 242
BstV1I GCAGC 4 cut(s) 70, 121, 196, 279
Cac8I GCNNGC 1 cut(s) 234
Csp6I GTAC 2 cut(s) 15, 178
CviJI RGCY 7 cut(s) 46, 71, 83, 134, 164, 209, 270
CviKI_1 RGCY 7 cut(s) 46, 71, 83, 134, 164, 209, 270
CviQI GTAC 2 cut(s) 15, 178
DpnI GATC 2 cut(s) 188, 225
DpnII GATC 2 cut(s) 186, 223
Eam1104I CTCTTC 1 cut(s) 93
EarI CTCTTC 1 cut(s) 93
Ecl136II GAGCTC 2 cut(s) 46, 71
Eco130I CCWWGG 1 cut(s) 58
Eco24I GRGCYC 2 cut(s) 48, 73
Eco53kI GAGCTC 2 cut(s) 46, 71
Eco88I CYCGRG 1 cut(s) 195
EcoICRI GAGCTC 2 cut(s) 46, 71
EcoT14I CCWWGG 1 cut(s) 58
EcoT38I GRGCYC 2 cut(s) 48, 73
ErhI CCWWGG 1 cut(s) 58
FaiI YATR 3 cut(s) 6, 93, 185
Fnu4HI GCNGC 6 cut(s) 81, 84, 87, 135, 210, 268
FriOI GRGCYC 2 cut(s) 48, 73
Fsp4HI GCNGC 6 cut(s) 81, 84, 87, 135, 210, 268
GluI GCNGC 6 cut(s) 81, 84, 87, 135, 210, 268
GsaI CCCAGC 1 cut(s) 164
HphI GGTGA 2 cut(s) 74, 272
Hpy188I TCNGA 2 cut(s) 75, 172
Hpy188III TCNNGA 1 cut(s) 227
HpyCH4III ACNGT 1 cut(s) 182
HpyCH4V TGCA 1 cut(s) 212
HpyF10VI GCNNNNNNNGC 3 cut(s) 77, 86, 242
Kzo9I GATC 2 cut(s) 186, 223
LmnI GCTCC 2 cut(s) 51, 68
LpnPI CCDG 2 cut(s) 63, 174
Lsp1109I GCAGC 4 cut(s) 70, 121, 196, 279
MaeIII GTNAC 1 cut(s) 199
MalI GATC 2 cut(s) 188, 225
MboI GATC 2 cut(s) 186, 223
MboII GAAGA 2 cut(s) 47, 110
MfeI CAATTG 1 cut(s) 237
MhlI GDGCHC 2 cut(s) 48, 73
MluCI AATT 2 cut(s) 219, 237
MmeI TCCRAC 1 cut(s) 195
MnlI CCTC 2 cut(s) 94, 118
MunI CAATTG 1 cut(s) 237
MwoI GCNNNNNNNGC 3 cut(s) 77, 86, 242
NdeII GATC 2 cut(s) 186, 223
NspV TTCGAA 1 cut(s) 274
PkrI GCNGC 6 cut(s) 82, 85, 88, 136, 211, 269
Psp124BI GAGCTC 2 cut(s) 48, 73
PspFI CCCAGC 1 cut(s) 160
RsaI GTAC 2 cut(s) 16, 179
RsaNI GTAC 2 cut(s) 15, 178
SacI GAGCTC 2 cut(s) 48, 73
SatI GCNGC 6 cut(s) 81, 84, 87, 135, 210, 268
Sau3AI GATC 2 cut(s) 186, 223
SduI GDGCHC 2 cut(s) 48, 73
SetI ASST 6 cut(s) 48, 60, 73, 105, 166, 272
SfuI TTCGAA 1 cut(s) 274
Sse9I AATT 2 cut(s) 219, 237
SsiI CCGC 3 cut(s) 80, 87, 245
SstI GAGCTC 2 cut(s) 48, 73
StyI CCWWGG 1 cut(s) 58
TaaI ACNGT 1 cut(s) 182
TaqI TCGA 2 cut(s) 226, 274
TasI AATT 2 cut(s) 219, 237
TatI WGTACW 1 cut(s) 14
TauI GCSGC 2 cut(s) 83, 89
TseI GCWGC 4 cut(s) 83, 134, 209, 267
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.