Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0009145.1

Orthogroup ID

OG0013470

Physical Location & Seq

Genomic Coordinates Forward (+)

4929 .. 6065

Gene Structure 1137 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0009145.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1137 bp

atggcagctctgacttcgtctgcatcaaccccagaaactgtgaattctgacgtagaaaggagcagaagcaacaaatctgagccgttgattccgggacttccagacgaggtggccgagctgtgtcttgtttaccttccgtatccgtaccaagctttggtgcgttcggtctctgcttcgtggaggagagccatttcagacccggcttttcttcactgcaagaagtcactttcgctcccgctgccctatcttttcgttttcgccttcaacaaattgacggccaggattcagtggcaagcgctcgaccctagatcgggccgttggtttgtcctacctccgatgccggggcattattccaagctcgcgagtccaccggggttagcgtgcgcctccttgccacgtcaggggatgcttgtcgtgttgggtggatcggacgcggaatcgtctatgcggtccactattgtgtaccgtacatctaccaatcagtggtccagcatggctcccatgccgaccgcccgatcgtattttgacgcgggaagcatcaataataagatcatagcagtcggaggtagtgggactcgcgagaatgactcgatcagggcggttgagtgttataaccctgaaaatgacacatgggcgacactggccacgatgccagctggacttgccaagtatgactcccacgtggtgggggataagatgtacgtcaccgaggggtggacgtggcccttcatgttctcgccacgcggcctgatctacgactcgaagacggacgcgtggcgagagatgagtcctgggatgagggaagggtggacaggtgtcagcgtggtcgtgggcaacaagttattagtgatctcggagtatggagattgtccgatgaaggtttatgaccacgataaggacacatggcggtacgtcggcggggacaagttcccgtgcgactcacttagacggcctttcgctgtgagcgcggtggaggggagcatatatgtggtggcatgtgggctgaatgtgggaataggaaggctgtctgaatcagaagcagaaaagggtgagctacaagttgagtggcaggttctgccagctccaagtgcttttaggggtttttctccttctagttgtgaagtgctttatgcctga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0007154 GO:0007165 GO:0007602 GO:0008150 GO:0009314 GO:0009416 GO:0009581 GO:0009582 GO:0009583 GO:0009585 GO:0009605 GO:0009628 GO:0009639 GO:0009987 GO:0010017 GO:0023052 GO:0050789 GO:0050794 GO:0050896 GO:0051606 GO:0051716 GO:0065007 GO:0071214 GO:0071478 GO:0071482 GO:0071489 GO:0104004

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box Kelch_1

Protein Analysis

378

Amino Acids

41.52

Weight (kDa)

6.15

Isoelectric Point (pI)

55.59

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013470)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G24540
fragaria_vesca	FvH4_2g36671
malus_domestica	MD08G1127900.v1.1 MD15G1107400.v1.1
prunus_persica	Prupe.1G459700_v2.0.a1 Prupe.5G016700_v2.0.a1
pyrus_communis	pycom08g10690 pycom15g09820
rosa_chinensis	RchiOBHm_Chr6g0305031
rosa_laevigata	RLG00000010926
rosa_multiflora	Rmu_sc0009145.1_g000002
rosa_roxburghii	Rroxscaffold_7G00163240
rosa_rugosa	Rorug06G0336900
rosa_samantha	Rh6AG448500 Rh6BG452400 Rh6CG462200 Rh6DG449100
rosa_wichuraiana	Rw6G039060

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	612
Acc36I	ACCTGC	1 cut(s)	1060
AccB7I	CCANNNNNTGG	3 cut(s)	154, 483, 685
AccII	CGCG	7 cut(s)	362, 434, 530, 579, 744, 773, 968
AclWI	GGATC	1 cut(s)	433
AcoI	YGGCCR	3 cut(s)	111, 276, 642
AcsI	RAATTY	1 cut(s)	43
AcvI	CACGTG	1 cut(s)	682
AdeI	CACNNNGTG	1 cut(s)	685
AfaI	GTAC	5 cut(s)	146, 464, 469, 701, 911
AfeI	AGCGCT	1 cut(s)	297
AfiI	CCNNNNNNNGG	9 cut(s)	154, 310, 311, 341, 401, 483, 685, 714, 895
AflIII	ACRYGT	1 cut(s)	771
AgsI	TTSAA	1 cut(s)	265
AjiI	CACGTC	2 cut(s)	398, 720
AjnI	CCWGG	2 cut(s)	278, 790
AleI	CACNNNNGTG	1 cut(s)	458
AluBI	AGCT	7 cut(s)	8, 118, 152, 358, 656, 1054, 1082
AluI	AGCT	7 cut(s)	8, 118, 152, 358, 656, 1054, 1082
Alw26I	GTCTC	1 cut(s)	172
AlwI	GGATC	1 cut(s)	433
AlwNI	CAGNNNCTG	2 cut(s)	38, 1075
Aor51HI	AGCGCT	1 cut(s)	297
AoxI	GGCC	7 cut(s)	111, 276, 313, 642, 722, 745, 950
ApeKI	GCWGC	2 cut(s)	5, 238
ApoI	RAATTY	1 cut(s)	43
AspLEI	GCGC	3 cut(s)	298, 386, 968
AspS9I	GGNCC	4 cut(s)	313, 450, 486, 723
AsuC2I	CCSGG	4 cut(s)	93, 200, 342, 372
AsuHPI	GGTGA	2 cut(s)	697, 1061
AvaII	GGWCC	2 cut(s)	450, 486
BalI	TGGCCA	1 cut(s)	644
BbrPI	CACGTG	1 cut(s)	682
BbsI	GAAGAC	1 cut(s)	770
BbvI	GCAGC	2 cut(s)	17, 225
BceAI	ACGGC	4 cut(s)	67, 291, 300, 965
BciT130I	CCWGG	2 cut(s)	280, 792
BciVI	GTATCC	1 cut(s)	150
BcnI	CCSGG	4 cut(s)	93, 200, 342, 372
BcoDI	GTCTC	1 cut(s)	172
BfaI	CTAG	2 cut(s)	306, 1113
BfoI	RGCGCY	1 cut(s)	299
BfuAI	ACCTGC	1 cut(s)	1060
BfuI	GTATCC	1 cut(s)	150
BisI	GCNGC	3 cut(s)	6, 239, 745
BlsI	GCNGC	3 cut(s)	7, 240, 746
Bme1390I	CCNGG	6 cut(s)	93, 200, 280, 342, 372, 792
Bme18I	GGWCC	2 cut(s)	450, 486
BmgBI	CACGTC	2 cut(s)	398, 720
BmgT120I	GGNCC	4 cut(s)	313, 450, 486, 723
BmiI	GGNNCC	1 cut(s)	498
BmrFI	CCNGG	6 cut(s)	93, 200, 280, 342, 372, 792
BmsI	GCATC	5 cut(s)	32, 327, 396, 546, 639
BoxI	GACNNNNGTC	1 cut(s)	815
BpiI	GAAGAC	1 cut(s)	770
BplI	GAGNNNNNCTC	2 cut(s)	572, 604
BpuMI	CCSGG	4 cut(s)	93, 200, 342, 372
BsaAI	YACGTR	1 cut(s)	682
BsaI	GGTCTC	1 cut(s)	172
BsaJI	CCNNGG	4 cut(s)	341, 371, 708, 791
BsaXI	ACNNNNNCTCC	2 cut(s)	216, 246
Bsc4I	CCNNNNNNNGG	9 cut(s)	154, 310, 311, 341, 401, 483, 685, 714, 895
Bse1I	ACTGG	1 cut(s)	645
BseBI	CCWGG	2 cut(s)	280, 792
BseDI	CCNNGG	4 cut(s)	341, 371, 708, 791
BseGI	GGATG	2 cut(s)	411, 801
BseLI	CCNNNNNNNGG	9 cut(s)	154, 310, 311, 341, 401, 483, 685, 714, 895
BseMII	CTCAG	1 cut(s)	69
BseNI	ACTGG	1 cut(s)	645
BseRI	GAGGAG	1 cut(s)	196
BseXI	GCAGC	2 cut(s)	17, 225
Bsh1236I	CGCG	7 cut(s)	362, 434, 530, 579, 744, 773, 968
Bsh1285I	CGRYCG	2 cut(s)	510, 518
BshFI	GGCC	7 cut(s)	113, 278, 315, 644, 724, 747, 952
BsiEI	CGRYCG	2 cut(s)	510, 518
BsiSI	CCGG	4 cut(s)	92, 200, 341, 371
BslFI	GGGAC	3 cut(s)	108, 586, 935
BslI	CCNNNNNNNGG	9 cut(s)	154, 310, 311, 341, 401, 483, 685, 714, 895
BsmAI	GTCTC	1 cut(s)	172
BsmFI	GGGAC	3 cut(s)	108, 586, 935
BsnI	GGCC	7 cut(s)	113, 278, 315, 644, 724, 747, 952
Bso31I	GGTCTC	1 cut(s)	172
Bsp143I	GATC	7 cut(s)	308, 425, 515, 549, 591, 750, 849
Bsp68I	TCGCGA	2 cut(s)	362, 579
BspANI	GGCC	7 cut(s)	113, 278, 315, 644, 724, 747, 952
BspCNI	CTCAG	1 cut(s)	70
BspFNI	CGCG	7 cut(s)	362, 434, 530, 579, 744, 773, 968
BspLI	GGNNCC	1 cut(s)	498
BspMI	ACCTGC	1 cut(s)	1060
BspPI	GGATC	1 cut(s)	433
BspTNI	GGTCTC	1 cut(s)	172
BsrI	ACTGG	1 cut(s)	645
BssECI	CCNNGG	4 cut(s)	341, 371, 708, 791
BssMI	GATC	7 cut(s)	308, 425, 515, 549, 591, 750, 849
Bst2UI	CCWGG	2 cut(s)	280, 792
Bst4CI	ACNGT	2 cut(s)	40, 467
BstAPI	GCANNNNNTGC	1 cut(s)	1075
BstBAI	YACGTR	1 cut(s)	682
BstC8I	GCNNGC	5 cut(s)	294, 360, 382, 654, 1080
BstDEI	CTNAG	2 cut(s)	78, 944
BstF5I	GGATG	2 cut(s)	411, 801
BstFNI	CGCG	7 cut(s)	362, 434, 530, 579, 744, 773, 968
BstH2I	RGCGCY	1 cut(s)	299
BstHHI	GCGC	3 cut(s)	298, 386, 968
BstKTI	GATC	7 cut(s)	311, 428, 518, 552, 594, 753, 852
BstMAI	GTCTC	1 cut(s)	172
BstMBI	GATC	7 cut(s)	308, 425, 515, 549, 591, 750, 849
BstMCI	CGRYCG	2 cut(s)	510, 518
BstMWI	GCNNNNNNNGC	6 cut(s)	238, 641, 662, 965, 1075, 1088
BstNI	CCWGG	2 cut(s)	280, 792
BstNSI	RCATGY	1 cut(s)	999
BstPAI	GACNNNNGTC	1 cut(s)	815
BstSCI	CCNGG	6 cut(s)	91, 198, 278, 340, 370, 790
BstUI	CGCG	7 cut(s)	362, 434, 530, 579, 744, 773, 968
BstV1I	GCAGC	2 cut(s)	17, 225
BstV2I	GAAGAC	1 cut(s)	770
BsuI	GTATCC	1 cut(s)	150
BsuRI	GGCC	7 cut(s)	113, 278, 315, 644, 724, 747, 952
BtrI	CACGTC	2 cut(s)	398, 720
BtsCI	GGATG	2 cut(s)	411, 801
BtsI	GCAGTG	1 cut(s)	211
BtsIMutI	CAGTG	4 cut(s)	211, 293, 488, 638
BtuMI	TCGCGA	2 cut(s)	362, 579
BveI	ACCTGC	1 cut(s)	1060
Cac8I	GCNNGC	5 cut(s)	294, 360, 382, 654, 1080
CaiI	CAGNNNCTG	2 cut(s)	38, 1075
CfoI	GCGC	3 cut(s)	298, 386, 968
Cfr13I	GGNCC	4 cut(s)	313, 450, 486, 723
CseI	GACGC	3 cut(s)	440, 536, 779
Csp6I	GTAC	5 cut(s)	145, 463, 468, 700, 910
CspCI	CAANNNNNGTGG	2 cut(s)	1046, 1081
CviAII	CATG	6 cut(s)	493, 502, 630, 730, 903, 996
CviQI	GTAC	5 cut(s)	145, 463, 468, 700, 910
DdeI	CTNAG	2 cut(s)	78, 944
DpnI	GATC	7 cut(s)	310, 427, 517, 551, 593, 752, 851
DpnII	GATC	7 cut(s)	308, 425, 515, 549, 591, 750, 849
DraIII	CACNNNGTG	1 cut(s)	685
EaeI	YGGCCR	3 cut(s)	111, 276, 642
Eco31I	GGTCTC	1 cut(s)	172
Eco47I	GGWCC	2 cut(s)	450, 486
Eco47III	AGCGCT	1 cut(s)	297
Eco72I	CACGTG	1 cut(s)	682
EcoRI	GAATTC	1 cut(s)	43
EcoRII	CCWGG	2 cut(s)	278, 790
FaeI	CATG	6 cut(s)	496, 505, 633, 733, 906, 999
FaqI	GGGAC	3 cut(s)	108, 586, 935
FatI	CATG	6 cut(s)	492, 501, 629, 729, 902, 995
FauI	CCCGC	3 cut(s)	243, 523, 911
Fnu4HI	GCNGC	3 cut(s)	6, 239, 745
FokI	GGATG	2 cut(s)	418, 808
Fsp4HI	GCNGC	3 cut(s)	6, 239, 745
FspBI	CTAG	2 cut(s)	306, 1113
GlaI	GCGC	3 cut(s)	297, 385, 967
GluI	GCNGC	3 cut(s)	6, 239, 745
HaeII	RGCGCY	1 cut(s)	299
HaeIII	GGCC	7 cut(s)	113, 278, 315, 644, 724, 747, 952
HapII	CCGG	4 cut(s)	92, 200, 341, 371
HgaI	GACGC	3 cut(s)	440, 536, 779
HhaI	GCGC	3 cut(s)	298, 386, 968
Hin1II	CATG	6 cut(s)	496, 505, 633, 733, 906, 999
Hin6I	GCGC	3 cut(s)	296, 384, 966
HinP1I	GCGC	3 cut(s)	296, 384, 966
HindIII	AAGCTT	1 cut(s)	150
HpaII	CCGG	4 cut(s)	92, 200, 341, 371
HphI	GGTGA	2 cut(s)	697, 1061
Hpy166II	GTNNAC	6 cut(s)	130, 368, 453, 463, 717, 810
Hpy188III	TCNNGA	3 cut(s)	101, 361, 578
Hpy8I	GTNNAC	6 cut(s)	130, 368, 453, 463, 717, 810
Hpy99I	CGWCG	1 cut(s)	917
HpyAV	CCTTC	7 cut(s)	143, 271, 736, 797, 871, 1014, 1119
HpyCH4III	ACNGT	2 cut(s)	40, 467
HpyCH4IV	ACGT	6 cut(s)	51, 397, 681, 702, 719, 912
HpyCH4V	TGCA	2 cut(s)	23, 216
HpyF10VI	GCNNNNNNNGC	6 cut(s)	238, 641, 662, 965, 1075, 1088
HpyF3I	CTNAG	2 cut(s)	78, 944
HpySE526I	ACGT	6 cut(s)	51, 397, 681, 702, 719, 912
Hsp92II	CATG	6 cut(s)	496, 505, 633, 733, 906, 999
HspAI	GCGC	3 cut(s)	296, 384, 966
Kzo9I	GATC	7 cut(s)	308, 425, 515, 549, 591, 750, 849
LmnI	GCTCC	5 cut(s)	60, 237, 502, 978, 1087
Lsp1109I	GCAGC	2 cut(s)	17, 225
LweI	GCATC	5 cut(s)	32, 327, 396, 546, 639
MaeI	CTAG	2 cut(s)	306, 1113
MaeII	ACGT	6 cut(s)	51, 397, 681, 702, 719, 912
MaeIII	GTNAC	2 cut(s)	222, 703
MalI	GATC	7 cut(s)	310, 427, 517, 551, 593, 752, 851
MboI	GATC	7 cut(s)	308, 425, 515, 549, 591, 750, 849
MboII	GAAGA	2 cut(s)	200, 775
MlsI	TGGCCA	1 cut(s)	644
MluCI	AATT	2 cut(s)	43, 269
MluI	ACGCGT	1 cut(s)	771
MluNI	TGGCCA	1 cut(s)	644
MlyI	GAGTC	7 cut(s)	373, 568, 581, 668, 752, 796, 932
MmeI	TCCRAC	1 cut(s)	541
MnlI	CCTC	8 cut(s)	100, 174, 342, 397, 557, 703, 792, 967
Mox20I	TGGCCA	1 cut(s)	644
MscI	TGGCCA	1 cut(s)	644
MslI	CAYNNNNRTG	2 cut(s)	458, 986
Msp20I	TGGCCA	1 cut(s)	644
MspA1I	CMGCKG	2 cut(s)	238, 656
MspI	CCGG	4 cut(s)	92, 200, 341, 371
MspR9I	CCNGG	6 cut(s)	93, 200, 280, 342, 372, 792
MvaI	CCWGG	2 cut(s)	280, 792
MvnI	CGCG	7 cut(s)	362, 434, 530, 579, 744, 773, 968
MwoI	GCNNNNNNNGC	6 cut(s)	238, 641, 662, 965, 1075, 1088
NciI	CCSGG	4 cut(s)	93, 200, 342, 372
NdeII	GATC	7 cut(s)	308, 425, 515, 549, 591, 750, 849
NlaIII	CATG	6 cut(s)	496, 505, 633, 733, 906, 999
NlaIV	GGNNCC	1 cut(s)	498
NmeAIII	GCCGAG	1 cut(s)	139
NmuCI	GTSAC	2 cut(s)	222, 703
NruI	TCGCGA	2 cut(s)	362, 579
NspI	RCATGY	1 cut(s)	999
OliI	CACNNNNGTG	1 cut(s)	458
PcsI	WCGNNNNNNNCGW	1 cut(s)	111
PfeI	GAWTC	4 cut(s)	88, 283, 437, 1031
PflFI	GACNNNGTC	1 cut(s)	16
PflMI	CCANNNNNTGG	3 cut(s)	154, 483, 685
PfoI	TCCNGGA	1 cut(s)	91
PkrI	GCNGC	3 cut(s)	7, 240, 746
Ple19I	CGATCG	1 cut(s)	518
PleI	GAGTC	7 cut(s)	372, 568, 581, 668, 752, 795, 932
PmaCI	CACGTG	1 cut(s)	682
PmlI	CACGTG	1 cut(s)	682
PpsI	GAGTC	7 cut(s)	372, 568, 581, 668, 752, 795, 932
Ppu21I	YACGTR	1 cut(s)	682
PshAI	GACNNNNGTC	1 cut(s)	815
PsiI	TTATAA	1 cut(s)	612
Psp6I	CCWGG	2 cut(s)	278, 790
PspCI	CACGTG	1 cut(s)	682
PspGI	CCWGG	2 cut(s)	278, 790
PspN4I	GGNNCC	1 cut(s)	498
PspPI	GGNCC	4 cut(s)	313, 450, 486, 723
PstNI	CAGNNNCTG	2 cut(s)	38, 1075
PsyI	GACNNNGTC	1 cut(s)	16
PvuI	CGATCG	1 cut(s)	518
PvuII	CAGCTG	1 cut(s)	656
RruI	TCGCGA	2 cut(s)	362, 579
RsaI	GTAC	5 cut(s)	146, 464, 469, 701, 911
RsaNI	GTAC	5 cut(s)	145, 463, 468, 700, 910
RseI	CAYNNNNRTG	2 cut(s)	458, 986
SatI	GCNGC	3 cut(s)	6, 239, 745
Sau3AI	GATC	7 cut(s)	308, 425, 515, 549, 591, 750, 849
Sau96I	GGNCC	4 cut(s)	313, 450, 486, 723
SchI	GAGTC	7 cut(s)	373, 568, 581, 668, 752, 796, 932
ScrFI	CCNGG	6 cut(s)	93, 200, 280, 342, 372, 792
SfaNI	GCATC	5 cut(s)	32, 327, 396, 546, 639
SinI	GGWCC	2 cut(s)	450, 486
SmiMI	CAYNNNNRTG	2 cut(s)	458, 986
Sse9I	AATT	2 cut(s)	43, 269
SspMI	CTAG	2 cut(s)	306, 1113
StyD4I	CCNGG	6 cut(s)	91, 198, 278, 340, 370, 790
TaaI	ACNGT	2 cut(s)	40, 467
TaiI	ACGT	6 cut(s)	54, 400, 684, 705, 722, 915
TaqI	TCGA	3 cut(s)	300, 590, 761
TaqII	GACCGA	1 cut(s)	154
TasI	AATT	2 cut(s)	43, 269
TauI	GCSGC	1 cut(s)	747
TfiI	GAWTC	4 cut(s)	88, 283, 437, 1031
TscAI	CASTG	4 cut(s)	218, 293, 488, 645
TseFI	GTSAC	2 cut(s)	222, 703
TseI	GCWGC	2 cut(s)	5, 238
Tsp45I	GTSAC	2 cut(s)	222, 703
TspDTI	ATGAA	2 cut(s)	718, 890
TspGWI	ACGGA	3 cut(s)	126, 132, 782
TspRI	CASTG	4 cut(s)	218, 293, 488, 645
Tth111I	GACNNNGTC	1 cut(s)	16
Van91I	CCANNNNNTGG	3 cut(s)	154, 483, 685
VpaK11BI	GGWCC	2 cut(s)	450, 486
XapI	RAATTY	1 cut(s)	43
XceI	RCATGY	1 cut(s)	999
XspI	CTAG	2 cut(s)	306, 1113

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.