Rorug06G0336900

f-box protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
OG0013470
Physical Location & Seq
Forward (+)
48886730 .. 48888592
1863 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0336900.1

Sequence Viewer

Length: 1221 bp
ATGGCGGAGAAGCAGATTAATGGGGTTGGGCTATTGCAGCAGCAGCAATGGTGCATTGTGTTCTGTATTTACTTGCTATTCAATTCCATTGCTGTAGCGATTCTCGACCCGGTTGATTTCTTGGCTCTCCAATCCATTCGCAAAGGTCTCGACGATTTGCCCGGGTCAAATTACTTCGCCTCCTGGGACTTCACTTCCGACCCCTGTAATTTCGCCGGCGTTTACTGTGATTCCGACAAGGTTATTGCTCTCAACCTCGGCGACCCGAGAGCCGCCGCTCCGGGTCTAACGGGTCGGATCGACCCGGCCATCGGCAAGCTCTCCGCCCTCGCCGAGCTCTCCATCGTCCCCGGTCGGATCTACGGCGCTCTCCCCCAGTCCATTTCCCAGATAAAGAGCCTCCGCTTCCTCGCCGCCAGCCGCAACTTCCTCTCCGGCCAGATTCCGGCGAGCCTCTCTCAGCTCCGCAACCTCCGCACTCTCGACCTCAGCTACAACATCTTCACCGGAGCGATCCCCGCCTCCATCGGAACCCTACCGGAGCTCACCAACGTCATTCTCGGCCACAACCGCCTCTCCGGCACGGTCCCTCCGTTCACCTCCAAATCCCTAACCCGCCTCGACCTGAAGCACAACGACTTCTCCGGTACGCTCGCTCCCAACTCCCTCCCTCCCTCACTCCAGTACCTCTCTCTCTCCTGGAACCGCCTCTCCGGCCCGGTCTACGGCCTCCTGAACCGGCTCGACCAGCTCAACTACCTCGACCTCAGCATGAACCAGTTCACGGGTACAGTTCCGGGTCGGGTATTCACCTTCCCAATCACCAACCTCCAGCTCCAGAGAAACCTCTTTTTCGGCCCGGTCCAGCCCTCCGATCAAGTCTCGATCCCGACCATTGACCTCAGCTACAACAGATTCTCCGGCGAAATCTCGCCGCTGTTCTCCACCGTCCAGAATCTCTACCTGAACAACAACCGGTTCACGGGTCAGGTCCCGGGTCCTTTCGTGGACCGGTTGCTGGCGGCAAATATTCAGATACTGTATCTCCAGCACAACTTTCTGACGGGGATTCAGATCAAACCGACGGCTGAGATTCCCCTGAGCAGCTCGCTGTGTCTGCAGTACAACTGCATGGTCCCGCCGGTAGAGACGCCGTGCCCGTTGAAGTCCGGGAAGCAGAAGGCGAGGCCTACTGCGCAGTGTAACGAGTGGAGAGGGTAG

Protein Analysis

406

Amino Acids

44.52

Weight (kDa)

8.74

Isoelectric Point (pI)

37.34

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRRNT_2 PF08263 39 - 77 2.6e-09 Leucine rich repeat N-terminal domain
LRR_14 PF23598 102 - 262 1.4e-06 Leucine-rich repeat region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013470)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G24540
fragaria_vesca FvH4_2g36671
malus_domestica MD08G1127900.v1.1 MD15G1107400.v1.1
prunus_persica Prupe.1G459700_v2.0.a1 Prupe.5G016700_v2.0.a1
pyrus_communis pycom08g10690 pycom15g09820
rosa_chinensis RchiOBHm_Chr6g0305031
rosa_laevigata RLG00000010926
rosa_multiflora Rmu_sc0009145.1_g000002
rosa_roxburghii Rroxscaffold_7G00163240
rosa_rugosa Rorug06G0336900
rosa_samantha Rh6AG448500 Rh6BG452400 Rh6CG462200 Rh6DG449100
rosa_wichuraiana Rw6G039060

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 1197
AccBSI CCGCTC 1 cut(s) 278
AccI GTMKAC 1 cut(s) 723
AclWI GGATC 4 cut(s) 305, 365, 508, 880
AcoI YGGCCR 3 cut(s) 306, 436, 562
AcuI CTGAAG 1 cut(s) 647
AcyI GRCGYC 1 cut(s) 1151
AfaI GTAC 4 cut(s) 649, 686, 790, 1124
AfiI CCNNNNNNNGG 6 cut(s) 311, 445, 725, 784, 982, 1018
AgeI ACCGGT 2 cut(s) 975, 1011
AgsI TTSAA 2 cut(s) 82, 1165
AjnI CCWGG 2 cut(s) 182, 698
AloI GAACNNNNNNTCC 2 cut(s) 695, 727
AluBI AGCT 9 cut(s) 319, 337, 463, 492, 544, 751, 835, 906, 1107
AluI AGCT 9 cut(s) 319, 337, 463, 492, 544, 751, 835, 906, 1107
Alw21I GWGCWC 2 cut(s) 339, 546
Alw26I GTCTC 3 cut(s) 152, 886, 1142
AlwI GGATC 4 cut(s) 305, 365, 508, 880
AlwNI CAGNNNCTG 1 cut(s) 1039
Ama87I CYCGRG 3 cut(s) 161, 265, 994
AoxI GGCC 7 cut(s) 306, 436, 562, 715, 727, 856, 1187
ApeKI GCWGC 4 cut(s) 37, 40, 43, 1104
AseI ATTAAT 1 cut(s) 18
AsiGI ACCGGT 2 cut(s) 975, 1011
Asp700I GAANNNNTTC 1 cut(s) 779
AspLEI GCGC 2 cut(s) 368, 1198
AspS9I GGNCC 8 cut(s) 586, 716, 857, 862, 991, 998, 1009, 1135
AsuHPI GGTGA 5 cut(s) 496, 538, 589, 802, 814
AvaI CYCGRG 3 cut(s) 161, 265, 994
AvaII GGWCC 6 cut(s) 586, 862, 991, 998, 1009, 1135
BaeGI GKGCMC 1 cut(s) 1160
BaeI ACNNNNGTAYC 2 cut(s) 668, 701
BanII GRGCYC 2 cut(s) 339, 546
Bbv12I GWGCWC 2 cut(s) 339, 546
BbvCI CCTCAGC 3 cut(s) 488, 767, 902
BbvI GCAGC 4 cut(s) 49, 52, 55, 1116
BccI CCATC 3 cut(s) 317, 350, 533
BceAI ACGGC 4 cut(s) 379, 742, 1101, 1138
BcgI CGANNNNNNTGC 2 cut(s) 130, 164
BciT130I CCWGG 2 cut(s) 184, 700
BcoDI GTCTC 3 cut(s) 152, 886, 1142
BfmI CTRYAG 2 cut(s) 93, 1118
BfoI RGCGCY 1 cut(s) 369
BglI GCCNNNNNGGC 2 cut(s) 579, 714
Bme18I GGWCC 6 cut(s) 586, 862, 991, 998, 1009, 1135
BmeT110I CYCGRG 3 cut(s) 161, 265, 994
BmgT120I GGNCC 8 cut(s) 586, 716, 857, 862, 991, 998, 1009, 1135
BmiI GGNNCC 6 cut(s) 532, 588, 704, 993, 999, 1137
BmrI ACTGGG 1 cut(s) 370
BmuI ACTGGG 1 cut(s) 370
BplI GAGNNNNNCTC 2 cut(s) 442, 474
BpmI CTGGAG 4 cut(s) 665, 815, 821, 1031
Bpu10I CCTNAGC 4 cut(s) 488, 767, 902, 1100
BsaBI GATNNNNATC 1 cut(s) 1073
BsaHI GRCGYC 1 cut(s) 1151
BsaI GGTCTC 1 cut(s) 152
BsaJI CCNNGG 5 cut(s) 161, 183, 256, 349, 994
BsaWI WCCGGW 5 cut(s) 506, 538, 644, 975, 1011
Bsc4I CCNNNNNNNGG 6 cut(s) 311, 445, 725, 784, 982, 1018
Bse118I RCCGGY 5 cut(s) 215, 738, 975, 1011, 1141
Bse1I ACTGG 3 cut(s) 376, 682, 778
Bse3DI GCAATG 2 cut(s) 53, 87
Bse8I GATNNNNATC 1 cut(s) 1073
BseBI CCWGG 2 cut(s) 184, 700
BseDI CCNNGG 5 cut(s) 161, 183, 256, 349, 994
BseJI GATNNNNATC 1 cut(s) 1073
BseLI CCNNNNNNNGG 6 cut(s) 311, 445, 725, 784, 982, 1018
BseMI GCAATG 2 cut(s) 53, 87
BseMII CTCAG 6 cut(s) 473, 502, 781, 916, 1080, 1091
BseNI ACTGG 3 cut(s) 376, 682, 778
BseSI GKGCMC 1 cut(s) 1160
BseXI GCAGC 4 cut(s) 49, 52, 55, 1116
Bsh1285I CGRYCG 1 cut(s) 355
BshFI GGCC 7 cut(s) 308, 438, 564, 717, 729, 858, 1189
BshTI ACCGGT 2 cut(s) 975, 1011
BsiEI CGRYCG 1 cut(s) 355
BsiHKAI GWGCWC 2 cut(s) 339, 546
BsiHKCI CYCGRG 3 cut(s) 161, 265, 994
BslFI GGGAC 5 cut(s) 200, 332, 572, 977, 1121
BslI CCNNNNNNNGG 6 cut(s) 311, 445, 725, 784, 982, 1018
BsmAI GTCTC 3 cut(s) 152, 886, 1142
BsmBI CGTCTC 1 cut(s) 1142
BsmFI GGGAC 5 cut(s) 200, 332, 572, 977, 1121
BsnI GGCC 7 cut(s) 308, 438, 564, 717, 729, 858, 1189
Bso31I GGTCTC 1 cut(s) 152
BsoBI CYCGRG 3 cut(s) 161, 265, 994
Bsp1286I GDGCHC 3 cut(s) 339, 546, 1160
Bsp143I GATC 6 cut(s) 297, 357, 513, 874, 885, 1074
BspANI GGCC 7 cut(s) 308, 438, 564, 717, 729, 858, 1189
BspCNI CTCAG 6 cut(s) 472, 501, 780, 915, 1081, 1092
BspLI GGNNCC 6 cut(s) 532, 588, 704, 993, 999, 1137
BspMAI CTGCAG 1 cut(s) 1122
BspPI GGATC 4 cut(s) 305, 365, 508, 880
BspTNI GGTCTC 1 cut(s) 152
BsrBI CCGCTC 1 cut(s) 278
BsrDI GCAATG 2 cut(s) 53, 87
BsrFI RCCGGY 5 cut(s) 215, 738, 975, 1011, 1141
BsrI ACTGG 3 cut(s) 376, 682, 778
BssAI RCCGGY 5 cut(s) 215, 738, 975, 1011, 1141
BssECI CCNNGG 5 cut(s) 161, 183, 256, 349, 994
BssMI GATC 6 cut(s) 297, 357, 513, 874, 885, 1074
BssNI GRCGYC 1 cut(s) 1151
Bst2UI CCWGG 2 cut(s) 184, 700
Bst4CI ACNGT 5 cut(s) 227, 586, 793, 949, 1041
BstACI GRCGYC 1 cut(s) 1151
BstC8I GCNNGC 7 cut(s) 217, 317, 418, 451, 654, 1020, 1109
BstDEI CTNAG 6 cut(s) 459, 488, 767, 902, 1089, 1100
BstH2I RGCGCY 1 cut(s) 369
BstHHI GCGC 2 cut(s) 368, 1198
BstKTI GATC 6 cut(s) 300, 360, 516, 877, 888, 1077
BstMAI GTCTC 3 cut(s) 152, 886, 1142
BstMBI GATC 6 cut(s) 297, 357, 513, 874, 885, 1074
BstMCI CGRYCG 1 cut(s) 355
BstNI CCWGG 2 cut(s) 184, 700
BstSFI CTRYAG 2 cut(s) 93, 1118
BstSLI GKGCMC 1 cut(s) 1160
BstV1I GCAGC 4 cut(s) 49, 52, 55, 1116
BstX2I RGATCY 1 cut(s) 357
BstYI RGATCY 1 cut(s) 357
BsuRI GGCC 7 cut(s) 308, 438, 564, 717, 729, 858, 1189
BtsI GCAGTG 1 cut(s) 1205
BtsIMutI CAGTG 1 cut(s) 1205
Cac8I GCNNGC 7 cut(s) 217, 317, 418, 451, 654, 1020, 1109
CaiI CAGNNNCTG 1 cut(s) 1039
CfoI GCGC 2 cut(s) 368, 1198
Cfr10I RCCGGY 5 cut(s) 215, 738, 975, 1011, 1141
Cfr13I GGNCC 8 cut(s) 586, 716, 857, 862, 991, 998, 1009, 1135
Cfr9I CCCGGG 2 cut(s) 161, 994
CseI GACGC 1 cut(s) 1159
Csp6I GTAC 4 cut(s) 648, 685, 789, 1123
CspAI ACCGGT 2 cut(s) 975, 1011
CviAII CATG 2 cut(s) 772, 1132
CviQI GTAC 4 cut(s) 648, 685, 789, 1123
DdeI CTNAG 6 cut(s) 459, 488, 767, 902, 1089, 1100
DpnI GATC 6 cut(s) 299, 359, 515, 876, 887, 1076
DpnII GATC 6 cut(s) 297, 357, 513, 874, 885, 1074
EaeI YGGCCR 3 cut(s) 306, 436, 562
EciI GGCGGA 2 cut(s) 20, 313
Ecl136II GAGCTC 2 cut(s) 337, 544
Eco147I AGGCCT 1 cut(s) 1189
Eco24I GRGCYC 2 cut(s) 339, 546
Eco31I GGTCTC 1 cut(s) 152
Eco47I GGWCC 6 cut(s) 586, 862, 991, 998, 1009, 1135
Eco53kI GAGCTC 2 cut(s) 337, 544
Eco57I CTGAAG 1 cut(s) 647
Eco88I CYCGRG 3 cut(s) 161, 265, 994
EcoICRI GAGCTC 2 cut(s) 337, 544
EcoO109I RGGNCCY 2 cut(s) 991, 998
EcoRII CCWGG 2 cut(s) 182, 698
EcoT38I GRGCYC 2 cut(s) 339, 546
Esp3I CGTCTC 1 cut(s) 1142
FaeI CATG 2 cut(s) 775, 1135
FaiI YATR 2 cut(s) 773, 1133
FaqI GGGAC 5 cut(s) 200, 332, 572, 977, 1121
FatI CATG 2 cut(s) 771, 1131
FauI CCCGC 3 cut(s) 526, 623, 1146
FblI GTMKAC 1 cut(s) 723
FriOI GRGCYC 2 cut(s) 339, 546
FspI TGCGCA 1 cut(s) 1197
GlaI GCGC 2 cut(s) 367, 1197
GsuI CTGGAG 4 cut(s) 665, 815, 821, 1031
HaeII RGCGCY 1 cut(s) 369
HaeIII GGCC 7 cut(s) 308, 438, 564, 717, 729, 858, 1189
HgaI GACGC 1 cut(s) 1159
HhaI GCGC 2 cut(s) 368, 1198
Hin1I GRCGYC 1 cut(s) 1151
Hin1II CATG 2 cut(s) 775, 1135
Hin6I GCGC 2 cut(s) 366, 1196
HinP1I GCGC 2 cut(s) 366, 1196
HinfI GANTC 7 cut(s) 100, 230, 442, 915, 955, 1069, 1093
HphI GGTGA 5 cut(s) 496, 538, 589, 802, 814
Hpy166II GTNNAC 6 cut(s) 223, 597, 724, 783, 981, 1009
Hpy188I TCNGA 9 cut(s) 199, 235, 297, 357, 530, 874, 1035, 1062, 1074
Hpy188III TCNNGA 8 cut(s) 104, 149, 482, 733, 838, 883, 889, 952
Hpy8I GTNNAC 6 cut(s) 223, 597, 724, 783, 981, 1009
Hpy99I CGWCG 2 cut(s) 155, 1087
HpyAV CCTTC 2 cut(s) 823, 1174
HpyCH4III ACNGT 5 cut(s) 227, 586, 793, 949, 1041
HpyCH4IV ACGT 1 cut(s) 552
HpyCH4V TGCA 4 cut(s) 37, 54, 1120, 1131
HpyF3I CTNAG 6 cut(s) 459, 488, 767, 902, 1089, 1100
HpySE526I ACGT 1 cut(s) 552
Hsp92I GRCGYC 1 cut(s) 1151
Hsp92II CATG 2 cut(s) 775, 1135
HspAI GCGC 2 cut(s) 366, 1196
KroI GCCGGC 1 cut(s) 215
KroNI GCCGGC 1 cut(s) 217
Kzo9I GATC 6 cut(s) 297, 357, 513, 874, 885, 1074
LmnI GCTCC 6 cut(s) 283, 468, 509, 541, 661, 840
Lsp1109I GCAGC 4 cut(s) 49, 52, 55, 1116
MaeII ACGT 1 cut(s) 552
MaeIII GTNAC 1 cut(s) 1202
MalI GATC 6 cut(s) 299, 359, 515, 876, 887, 1076
MbiI CCGCTC 1 cut(s) 278
MboI GATC 6 cut(s) 297, 357, 513, 874, 885, 1074
MboII GAAGA 1 cut(s) 493
MflI RGATCY 1 cut(s) 357
MhlI GDGCHC 3 cut(s) 339, 546, 1160
MluCI AATT 3 cut(s) 82, 169, 208
MmeI TCCRAC 4 cut(s) 222, 258, 275, 335
MreI CGCCGGCG 1 cut(s) 215
MroNI GCCGGC 1 cut(s) 215
MroXI GAANNNNTTC 1 cut(s) 779
MseI TTAA 1 cut(s) 18
MspA1I CMGCKG 1 cut(s) 937
MvaI CCWGG 2 cut(s) 184, 700
NaeI GCCGGC 1 cut(s) 217
NdeII GATC 6 cut(s) 297, 357, 513, 874, 885, 1074
NgoMIV GCCGGC 1 cut(s) 215
NlaIII CATG 2 cut(s) 775, 1135
NlaIV GGNNCC 6 cut(s) 532, 588, 704, 993, 999, 1137
NmeAIII GCCGAG 3 cut(s) 237, 358, 540
NsbI TGCGCA 1 cut(s) 1197
PceI AGGCCT 1 cut(s) 1189
PcsI WCGNNNNNNNCGW 2 cut(s) 590, 1157
PdiI GCCGGC 1 cut(s) 217
PdmI GAANNNNTTC 1 cut(s) 779
PfeI GAWTC 7 cut(s) 100, 230, 442, 915, 955, 1069, 1093
PfoI TCCNGGA 2 cut(s) 698, 1169
PinAI ACCGGT 2 cut(s) 975, 1011
PpuMI RGGWCCY 2 cut(s) 991, 998
PshBI ATTAAT 1 cut(s) 18
Psp124BI GAGCTC 2 cut(s) 339, 546
Psp5II RGGWCCY 2 cut(s) 991, 998
Psp6I CCWGG 2 cut(s) 182, 698
PspGI CCWGG 2 cut(s) 182, 698
PspN4I GGNNCC 6 cut(s) 532, 588, 704, 993, 999, 1137
PspPI GGNCC 8 cut(s) 586, 716, 857, 862, 991, 998, 1009, 1135
PspPPI RGGWCCY 2 cut(s) 991, 998
PstI CTGCAG 1 cut(s) 1122
PstNI CAGNNNCTG 1 cut(s) 1039
PsuI RGATCY 1 cut(s) 357
RsaI GTAC 4 cut(s) 649, 686, 790, 1124
RsaNI GTAC 4 cut(s) 648, 685, 789, 1123
SacI GAGCTC 2 cut(s) 339, 546
SaqAI TTAA 1 cut(s) 18
Sau3AI GATC 6 cut(s) 297, 357, 513, 874, 885, 1074
Sau96I GGNCC 8 cut(s) 586, 716, 857, 862, 991, 998, 1009, 1135
SduI GDGCHC 3 cut(s) 339, 546, 1160
SfcI CTRYAG 2 cut(s) 93, 1118
SgrAI CRCCGGYG 1 cut(s) 215
SinI GGWCC 6 cut(s) 586, 862, 991, 998, 1009, 1135
SmaI CCCGGG 2 cut(s) 163, 996
Sse9I AATT 3 cut(s) 82, 169, 208
SseBI AGGCCT 1 cut(s) 1189
SspI AATATT 1 cut(s) 1030
SstI GAGCTC 2 cut(s) 339, 546
StuI AGGCCT 1 cut(s) 1189
TaaI ACNGT 5 cut(s) 227, 586, 793, 949, 1041
TaiI ACGT 1 cut(s) 555
TaqI TCGA 8 cut(s) 105, 150, 300, 483, 621, 744, 762, 884
TasI AATT 3 cut(s) 82, 169, 208
TatI WGTACW 1 cut(s) 1122
TauI GCSGC 6 cut(s) 275, 278, 416, 423, 937, 1025
TfiI GAWTC 7 cut(s) 100, 230, 442, 915, 955, 1069, 1093
Tru1I TTAA 1 cut(s) 18
Tru9I TTAA 1 cut(s) 18
TscAI CASTG 1 cut(s) 1205
TseI GCWGC 4 cut(s) 37, 40, 43, 1104
TspDTI ATGAA 1 cut(s) 788
TspGWI ACGGA 1 cut(s) 582
TspMI CCCGGG 2 cut(s) 161, 994
TspRI CASTG 1 cut(s) 1205
VpaK11BI GGWCC 6 cut(s) 586, 862, 991, 998, 1009, 1135
VspI ATTAAT 1 cut(s) 18
XmaI CCCGGG 2 cut(s) 161, 994
XmiI GTMKAC 1 cut(s) 723
XmnI GAANNNNTTC 1 cut(s) 779
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.