Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0011044.1

Orthogroup ID

OG0012146

Physical Location & Seq

Genomic Coordinates Reverse (-)

4758 .. 20948

Gene Structure 16191 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0011044.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2694 bp

atggcggatcaggaggaggacctgcaaatggcactgaggatgagtatgcagaattcgccgccggagcccaagcggagcaagcccagggacgccgattcgccggcggatgagtcgtcggaagtcaagacccggcgacttcagcgagagctcatggctactgcagccgagaggagaatgctcgatgccagggccaacgctcctcctactcctccggccgcctcaccggtctccgtttccaggtctgcggcgggctcgggttcgggtttggcgcccaatgtggttaggaaagagaggcaattgggagcggagttgagcgtgggggatgccaagcagttgttttcgatggtgtttggggctgaggtttccaagggcattcttgcgcagtggagtaatcagggtataaggtttagccctgatccagaaacatcgatgggtctagtgcagcatgaaggtgggccctgtggcgttttagcagccattcaagcacttgttctcaaatacctccttttctacccagacggactaggtaaaggtgcaccaaacatgcatcacaatttgggttcaaggacactttctagtcattgtgttgcatcgactaacttttcctcactttctgaagatgcaaaagcaagagcattgcttagaagtatgggtgagatattgttctcatgtggaagtaatgaaagggcggtggttgcaactttgagtgttattggagatgacattgagaggtttgaaggcagcaaggatgaagtaatagcaaaatcacttgagggcctttctattgaatcggctgctgacttgcataaagtgctaagagttaacacatacacgacgcaagaaagtgcattacgggggctagaagcagtgattcctgttttccgaagtcgtatgggggcattgctgttccttatttctgctttgctttcacgaggactggacttaatccaggctgatagggatgatcccagcctacctcttgtcactgctccatttgggcatgcctcacaggaaattgtgaacttactgctttgcgggcaggccgtcccaaatgttttcgacggaaagatggatttaggtggtggtatgtctttaaagggcatatccagaaccgtggaagttggattcctcacactgttggagtcccttaatttctgcaaagttggccagtatttgaaatgccccaaatggccaatttgggtagttggaagtgagtctcattatacagttctctttgctcctgataccagtgtccaggatgagaatgaactggaaggaagggaatcacagattcggaaagcttttgatgcacaagatcagagtgggggtggtggtttcattagtgttgaaggctttcatcaagtccttagggaaactaatgtaaaagttccaagtgagaaggttgatcttctttgcagcacaggatttattgtatggagtgagttctggcaggtcattttggatctggacaagagcatgggaggcctcaaggattcaactggattaatgggcaagaaggtctttgatctttaccattttaatggaattgcaaaatcagatctgaatggaagccaggtaagctctggaggcgagactccagtgcaaagacctaggctcacaaaattgagggtgtcagttcctccaagatggactcctgaagaatatatgacagatgtagcagtgtcctctagtgggaatgaatccaaaagtgaagtcacagaaatttctaagccagagcctcctcagcatgcacctttggtggactgcataagaacgcgctggccccgtgctgtttgcaattgggataaggggtttctggtatattggcgtctgggatgtgaggacgccctgattaggattttgtatccactgatctacacctacatctacttctcataccttgattcctcttcgcctgtgccttgtactcaactaccgtatctatgtattgcaacaaagcaggaaaagagattagctgctgctttgacaactatgatgttcctcagggacagttgtttgaatttcaagtccatctgcatagcagcagagttttcatgggggacgtcaaagagggtcttccaagtatatggttgtgttgtgacttgtaaagacatggttgaacacaaagatcccaaaaattcatttgacaaagctgattattatgtacatccagaacactacaacccggttttccatgaaaatatagctccttatgcatctgtaatcgtgaattgtatgtattgggagaaaagatatcctcgattattgagtacaaagcagtttcaagatttaacaaggaaaggatgtaagcttgttggtatctctgatataacttgtgatatagggggatcaatagagtttgttaatcaagccacacaaattgactcacctttcttcagatatgatccaataaaagattcttaccatcaggacatggaaggtgatggtgtggtatgttcagctgtggacattcttccaacagaatttgcaaaagagattatcgaaatagggcgaaataaggcaaatcctttgaagtattggctaccggaaggaaggagtagactcaggttttgtgaccagtttcaggtaatatctctgctccgatttgttgttgttagtcatttagtatatggaggaaatgtgaaattgcatctgccaattttgggattgagcatggagtggtttgatttctga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF4205

Protein Analysis

897

Amino Acids

99.33

Weight (kDa)

5.95

Isoelectric Point (pI)

47.25

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012146)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G43690
fragaria_vesca	FvH4_2g13910 FvH4_2g13910
malus_domestica	MD05G1023700.v1.1 MD10G1024300.v1.1
prunus_persica	Prupe.8G028200_v2.0.a1 Prupe.8G028200_v2.0.a1
pyrus_communis	pycom05g01520 pycom10g01610
rosa_chinensis	RchiOBHm_Chr6g0275661
rosa_laevigata	RLG00000013449
rosa_multiflora	Rmu_sc0011044.1_g000001
rosa_roxburghii	Rroxscaffold_7G00193050
rosa_rugosa	Rorug06G0095400
rosa_samantha	Rh6AG207300 Rh6BG209900 Rh6CG213300 Rh6DG203000
rosa_wichuraiana	Rw6G018070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	2066
Acc16I	TGCGCA	1 cut(s)	381
Acc36I	ACCTGC	2 cut(s)	30, 1441
AccB1I	GGYRCC	1 cut(s)	268
AccBSI	CCGCTC	1 cut(s)	305
AccI	GTMKAC	1 cut(s)	2560
AccII	CGCG	1 cut(s)	1777
AclWI	GGATC	7 cut(s)	15, 410, 959, 1470, 2123, 2356, 2399
AcoI	YGGCCR	3 cut(s)	213, 1165, 1190
AcsI	RAATTY	5 cut(s)	52, 1722, 2020, 2137, 2483
AcuI	CTGAAG	4 cut(s)	122, 636, 1677, 2380
AcyI	GRCGYC	5 cut(s)	90, 269, 1828, 1845, 2063
AfaI	GTAC	3 cut(s)	1927, 2166, 2272
AfiI	CCNNNNNNNGG	6 cut(s)	28, 237, 1692, 1854, 2584, 2663
AgeI	ACCGGT	1 cut(s)	223
AjnI	CCWGG	6 cut(s)	83, 185, 236, 948, 1254, 1572
AjuI	GAANNNNNNNTTGG	2 cut(s)	2401, 2433
AluBI	AGCT	8 cut(s)	148, 1301, 1581, 1976, 2153, 2207, 2311, 2462
AluI	AGCT	8 cut(s)	148, 1301, 1581, 1976, 2153, 2207, 2311, 2462
Alw21I	GWGCWC	2 cut(s)	150, 538
Alw26I	GTCTC	3 cut(s)	232, 1221, 1586
Alw44I	GTGCAC	1 cut(s)	534
AlwI	GGATC	7 cut(s)	15, 410, 959, 1470, 2123, 2356, 2399
Ama87I	CYCGRG	1 cut(s)	253
AoxI	GGCC	9 cut(s)	189, 213, 455, 775, 1041, 1165, 1190, 1483, 1781
ApaI	GGGCCC	1 cut(s)	459
ApaLI	GTGCAC	1 cut(s)	534
ApeKI	GCWGC	9 cut(s)	161, 442, 473, 741, 794, 1416, 1976, 1979, 2042
ApoI	RAATTY	5 cut(s)	52, 1722, 2020, 2137, 2483
ArsI	GACNNNNNNTTYG	4 cut(s)	1698, 1730, 2553, 2585
AseI	ATTAAT	1 cut(s)	1505
AsiGI	ACCGGT	1 cut(s)	223
Asp700I	GAANNNNTTC	1 cut(s)	1353
AspA2I	CCTAGG	1 cut(s)	1610
AspLEI	GCGC	3 cut(s)	271, 382, 1779
AspS9I	GGNCC	6 cut(s)	19, 189, 455, 456, 775, 1782
AsuC2I	CCSGG	2 cut(s)	130, 2186
AsuHPI	GGTGA	4 cut(s)	213, 665, 2379, 2453
AvaI	CYCGRG	1 cut(s)	253
AvaII	GGWCC	1 cut(s)	19
AvrII	CCTAGG	1 cut(s)	1610
AxyI	CCTNAGG	2 cut(s)	1367, 2003
BaeGI	GKGCMC	2 cut(s)	459, 538
BaeI	ACNNNNGTAYC	4 cut(s)	1236, 1269, 1922, 1955
BalI	TGGCCA	2 cut(s)	1167, 1192
BanI	GGYRCC	1 cut(s)	268
BanII	GRGCYC	4 cut(s)	69, 150, 254, 459
BauI	CACGAG	1 cut(s)	930
BbsI	GAAGAC	1 cut(s)	2068
Bbv12I	GWGCWC	2 cut(s)	150, 538
BbvCI	CCTCAGC	2 cut(s)	357, 1743
BbvI	GCAGC	9 cut(s)	173, 454, 485, 753, 781, 1428, 1963, 1966, 2054
BccI	CCATC	7 cut(s)	337, 424, 1063, 1641, 2039, 2433, 2438
BceAI	ACGGC	1 cut(s)	1028
BciT130I	CCWGG	6 cut(s)	85, 187, 238, 950, 1256, 1574
BciVI	GTATCC	1 cut(s)	1875
BcnI	CCSGG	2 cut(s)	130, 2186
BcoDI	GTCTC	3 cut(s)	232, 1221, 1586
BfaI	CTAG	6 cut(s)	437, 524, 576, 860, 1611, 1689
BfmI	CTRYAG	1 cut(s)	159
BfoI	RGCGCY	1 cut(s)	272
BfuAI	ACCTGC	2 cut(s)	30, 1441
BfuI	GTATCC	1 cut(s)	1875
BglII	AGATCT	1 cut(s)	1558
BlnI	CCTAGG	1 cut(s)	1610
Bme1390I	CCNGG	8 cut(s)	85, 130, 187, 238, 950, 1256, 1574, 2186
Bme18I	GGWCC	1 cut(s)	19
BmeT110I	CYCGRG	1 cut(s)	253
BmgT120I	GGNCC	6 cut(s)	19, 189, 455, 456, 775, 1782
BmiI	GGNNCC	4 cut(s)	66, 270, 457, 1784
BmrFI	CCNGG	8 cut(s)	85, 130, 187, 238, 950, 1256, 1574, 2186
BmsI	GCATC	8 cut(s)	172, 313, 556, 599, 610, 1297, 2225, 2659
BpiI	GAAGAC	1 cut(s)	2068
BpmI	CTGGAG	2 cut(s)	1581, 1605
Bpu10I	CCTNAGC	2 cut(s)	357, 1743
BpuEI	CTTGAG	2 cut(s)	791, 1472
BpuMI	CCSGG	2 cut(s)	130, 2186
Bsa29I	ATCGAT	1 cut(s)	428
BsaHI	GRCGYC	5 cut(s)	90, 269, 1828, 1845, 2063
BsaI	GGTCTC	1 cut(s)	232
BsaJI	CCNNGG	6 cut(s)	83, 84, 186, 366, 1113, 1610
BsaWI	WCCGGW	2 cut(s)	223, 2545
BsaXI	ACNNNNNCTCC	2 cut(s)	2625, 2655
Bsc4I	CCNNNNNNNGG	6 cut(s)	28, 237, 1692, 1854, 2584, 2663
Bse118I	RCCGGY	2 cut(s)	100, 223
Bse1I	ACTGG	7 cut(s)	942, 1168, 1248, 1275, 1504, 1598, 2578
Bse21I	CCTNAGG	2 cut(s)	1367, 2003
Bse3DI	GCAATG	2 cut(s)	635, 899
BseBI	CCWGG	6 cut(s)	85, 187, 238, 950, 1256, 1574
BseCI	ATCGAT	1 cut(s)	428
BseDI	CCNNGG	6 cut(s)	83, 84, 186, 366, 1113, 1610
BseGI	GGATG	9 cut(s)	45, 112, 328, 754, 967, 1264, 1841, 2167, 2309
BseLI	CCNNNNNNNGG	6 cut(s)	28, 237, 1692, 1854, 2584, 2663
BseMI	GCAATG	2 cut(s)	635, 899
BseMII	CTCAG	5 cut(s)	26, 348, 1757, 2017, 2578
BseNI	ACTGG	7 cut(s)	942, 1168, 1248, 1275, 1504, 1598, 2578
BseRI	GAGGAG	5 cut(s)	29, 184, 189, 198, 1731
BseSI	GKGCMC	2 cut(s)	459, 538
BseX3I	CGGCCG	1 cut(s)	213
BseXI	GCAGC	9 cut(s)	173, 454, 485, 753, 781, 1428, 1963, 1966, 2054
BseYI	CCCAGC	1 cut(s)	968
BsgI	GTGCAG	1 cut(s)	461
Bsh1236I	CGCG	1 cut(s)	1777
Bsh1285I	CGRYCG	1 cut(s)	216
BshFI	GGCC	9 cut(s)	191, 215, 457, 777, 1043, 1167, 1192, 1485, 1783
BshNI	GGYRCC	1 cut(s)	268
BshTI	ACCGGT	1 cut(s)	223
BshVI	ATCGAT	1 cut(s)	428
BsiEI	CGRYCG	1 cut(s)	216
BsiHKAI	GWGCWC	2 cut(s)	150, 538
BsiHKCI	CYCGRG	1 cut(s)	253
BsiSI	CCGG	7 cut(s)	62, 101, 130, 212, 224, 2186, 2546
BslFI	GGGAC	5 cut(s)	101, 1031, 1129, 2021, 2074
BslI	CCNNNNNNNGG	6 cut(s)	28, 237, 1692, 1854, 2584, 2663
BsmAI	GTCTC	3 cut(s)	232, 1221, 1586
BsmFI	GGGAC	5 cut(s)	101, 1031, 1129, 2021, 2074
BsmI	GAATGC	2 cut(s)	180, 372
BsnI	GGCC	9 cut(s)	191, 215, 457, 777, 1043, 1167, 1192, 1485, 1783
Bso31I	GGTCTC	1 cut(s)	232
BsoBI	CYCGRG	1 cut(s)	253
Bsp120I	GGGCCC	1 cut(s)	455
Bsp1286I	GDGCHC	5 cut(s)	69, 150, 254, 459, 538
Bsp1407I	TGTACA	1 cut(s)	2164
BspANI	GGCC	9 cut(s)	191, 215, 457, 777, 1043, 1167, 1192, 1485, 1783
BspCNI	CTCAG	5 cut(s)	27, 349, 1756, 2016, 2577
BspDI	ATCGAT	1 cut(s)	428
BspFNI	CGCG	1 cut(s)	1777
BspLI	GGNNCC	4 cut(s)	66, 270, 457, 1784
BspMAI	CTGCAG	1 cut(s)	163
BspMI	ACCTGC	2 cut(s)	30, 1441
BspPI	GGATC	7 cut(s)	15, 410, 959, 1470, 2123, 2356, 2399
BspT107I	GGYRCC	1 cut(s)	268
BspTNI	GGTCTC	1 cut(s)	232
BsrBI	CCGCTC	1 cut(s)	305
BsrDI	GCAATG	2 cut(s)	635, 899
BsrFI	RCCGGY	2 cut(s)	100, 223
BsrGI	TGTACA	1 cut(s)	2164
BsrI	ACTGG	7 cut(s)	942, 1168, 1248, 1275, 1504, 1598, 2578
BssAI	RCCGGY	2 cut(s)	100, 223
BssECI	CCNNGG	6 cut(s)	83, 84, 186, 366, 1113, 1610
BssNI	GRCGYC	5 cut(s)	90, 269, 1828, 1845, 2063
BssSI	CACGAG	1 cut(s)	930
BssT1I	CCWWGG	2 cut(s)	366, 1610
Bst2BI	CACGAG	1 cut(s)	930
Bst2UI	CCWGG	6 cut(s)	85, 187, 238, 950, 1256, 1574
Bst4CI	ACNGT	5 cut(s)	1114, 1137, 1228, 1938, 2012
Bst6I	CTCTTC	1 cut(s)	1915
BstACI	GRCGYC	5 cut(s)	90, 269, 1828, 1845, 2063
BstAPI	GCANNNNNTGC	1 cut(s)	811
BstAUI	TGTACA	1 cut(s)	2164
BstC8I	GCNNGC	8 cut(s)	80, 102, 250, 1002, 1037, 1041, 1749, 1781
BstDEI	CTNAG	9 cut(s)	35, 357, 641, 815, 1367, 1728, 1743, 2003, 2564
BstDSI	CCRYGG	1 cut(s)	1113
BstF5I	GGATG	9 cut(s)	45, 112, 328, 754, 967, 1264, 1841, 2167, 2309
BstFNI	CGCG	1 cut(s)	1777
BstH2I	RGCGCY	1 cut(s)	272
BstHHI	GCGC	3 cut(s)	271, 382, 1779
BstMAI	GTCTC	3 cut(s)	232, 1221, 1586
BstMCI	CGRYCG	1 cut(s)	216
BstNI	CCWGG	6 cut(s)	85, 187, 238, 950, 1256, 1574
BstNSI	RCATGY	3 cut(s)	547, 1004, 1751
BstSCI	CCNGG	8 cut(s)	83, 128, 185, 236, 948, 1254, 1572, 2184
BstSFI	CTRYAG	1 cut(s)	159
BstSLI	GKGCMC	2 cut(s)	459, 538
BstUI	CGCG	1 cut(s)	1777
BstV1I	GCAGC	9 cut(s)	173, 454, 485, 753, 781, 1428, 1963, 1966, 2054
BstV2I	GAAGAC	1 cut(s)	2068
BstX2I	RGATCY	3 cut(s)	1462, 1558, 2128
BstXI	CCANNNNNNTGG	3 cut(s)	1114, 1541, 2087
BstYI	RGATCY	3 cut(s)	1462, 1558, 2128
BstZI	CGGCCG	1 cut(s)	213
Bsu15I	ATCGAT	1 cut(s)	428
Bsu36I	CCTNAGG	2 cut(s)	1367, 2003
BsuI	GTATCC	1 cut(s)	1875
BsuRI	GGCC	9 cut(s)	191, 215, 457, 777, 1043, 1167, 1192, 1485, 1783
BsuTUI	ATCGAT	1 cut(s)	428
BtgI	CCRYGG	1 cut(s)	1113
BtsCI	GGATG	9 cut(s)	45, 112, 328, 754, 967, 1264, 1841, 2167, 2309
BtsI	GCAGTG	4 cut(s)	389, 873, 984, 1686
BtsIMutI	CAGTG	9 cut(s)	32, 389, 873, 984, 1133, 1255, 1605, 1686, 1868
BveI	ACCTGC	2 cut(s)	30, 1441
Cac8I	GCNNGC	8 cut(s)	80, 102, 250, 1002, 1037, 1041, 1749, 1781
CfoI	GCGC	3 cut(s)	271, 382, 1779
Cfr10I	RCCGGY	2 cut(s)	100, 223
Cfr13I	GGNCC	6 cut(s)	19, 189, 455, 456, 775, 1782
ClaI	ATCGAT	1 cut(s)	428
CseI	GACGC	4 cut(s)	98, 844, 1817, 1853
Csp6I	GTAC	3 cut(s)	1926, 2165, 2271
CspAI	ACCGGT	1 cut(s)	223
CspCI	CAANNNNNGTGG	2 cut(s)	2362, 2397
CviQI	GTAC	3 cut(s)	1926, 2165, 2271
DdeI	CTNAG	9 cut(s)	35, 357, 641, 815, 1367, 1728, 1743, 2003, 2564
DinI	GGCGCC	1 cut(s)	270
DraI	TTTAAA	1 cut(s)	1095
EaeI	YGGCCR	3 cut(s)	213, 1165, 1190
EagI	CGGCCG	1 cut(s)	213
Eam1104I	CTCTTC	1 cut(s)	1915
EarI	CTCTTC	1 cut(s)	1915
EciI	GGCGGA	2 cut(s)	20, 119
Ecl136II	GAGCTC	1 cut(s)	148
EclXI	CGGCCG	1 cut(s)	213
Eco130I	CCWWGG	2 cut(s)	366, 1610
Eco147I	AGGCCT	1 cut(s)	1485
Eco24I	GRGCYC	4 cut(s)	69, 150, 254, 459
Eco31I	GGTCTC	1 cut(s)	232
Eco32I	GATATC	1 cut(s)	2255
Eco47I	GGWCC	1 cut(s)	19
Eco52I	CGGCCG	1 cut(s)	213
Eco53kI	GAGCTC	1 cut(s)	148
Eco57I	CTGAAG	4 cut(s)	122, 636, 1677, 2380
Eco81I	CCTNAGG	2 cut(s)	1367, 2003
Eco88I	CYCGRG	1 cut(s)	253
EcoICRI	GAGCTC	1 cut(s)	148
EcoO109I	RGGNCCY	3 cut(s)	19, 456, 775
EcoRI	GAATTC	1 cut(s)	52
EcoRII	CCWGG	6 cut(s)	83, 185, 236, 948, 1254, 1572
EcoRV	GATATC	1 cut(s)	2255
EcoT14I	CCWWGG	2 cut(s)	366, 1610
EcoT22I	ATGCAT	2 cut(s)	549, 2218
EcoT38I	GRGCYC	4 cut(s)	69, 150, 254, 459
EgeI	GGCGCC	1 cut(s)	270
EheI	GGCGCC	1 cut(s)	270
ErhI	CCWWGG	2 cut(s)	366, 1610
FalI	AAGNNNNNCTT	4 cut(s)	1505, 1537, 2060, 2092
FaqI	GGGAC	5 cut(s)	101, 1031, 1129, 2021, 2074
FauI	CCCGC	2 cut(s)	241, 1028
FblI	GTMKAC	1 cut(s)	2560
FokI	GGATG	9 cut(s)	52, 119, 335, 761, 974, 1271, 1848, 2154, 2316
FriOI	GRGCYC	4 cut(s)	69, 150, 254, 459
FspBI	CTAG	6 cut(s)	437, 524, 576, 860, 1611, 1689
FspI	TGCGCA	1 cut(s)	381
GlaI	GCGC	3 cut(s)	270, 381, 1778
GsaI	CCCAGC	1 cut(s)	972
GsuI	CTGGAG	2 cut(s)	1581, 1605
HaeII	RGCGCY	1 cut(s)	272
HaeIII	GGCC	9 cut(s)	191, 215, 457, 777, 1043, 1167, 1192, 1485, 1783
HapII	CCGG	7 cut(s)	62, 101, 130, 212, 224, 2186, 2546
HgaI	GACGC	4 cut(s)	98, 844, 1817, 1853
HhaI	GCGC	3 cut(s)	271, 382, 1779
Hin1I	GRCGYC	5 cut(s)	90, 269, 1828, 1845, 2063
Hin6I	GCGC	3 cut(s)	269, 380, 1777
HinP1I	GCGC	3 cut(s)	269, 380, 1777
HincII	GTYRAC	1 cut(s)	823
HindII	GTYRAC	1 cut(s)	823
HindIII	AAGCTT	2 cut(s)	1299, 2309
HpaI	GTTAAC	1 cut(s)	823
HpaII	CCGG	7 cut(s)	62, 101, 130, 212, 224, 2186, 2546
HphI	GGTGA	4 cut(s)	213, 665, 2379, 2453
Hpy166II	GTNNAC	6 cut(s)	536, 823, 1021, 1762, 2467, 2561
Hpy8I	GTNNAC	6 cut(s)	536, 823, 1021, 1762, 2467, 2561
Hpy99I	CGWCG	3 cut(s)	118, 838, 1064
HpyCH4III	ACNGT	5 cut(s)	1114, 1137, 1228, 1938, 2012
HpyCH4IV	ACGT	1 cut(s)	2063
HpyF3I	CTNAG	9 cut(s)	35, 357, 641, 815, 1367, 1728, 1743, 2003, 2564
HpySE526I	ACGT	1 cut(s)	2063
Hsp92I	GRCGYC	5 cut(s)	90, 269, 1828, 1845, 2063
HspAI	GCGC	3 cut(s)	269, 380, 1777
KasI	GGCGCC	1 cut(s)	268
KroI	GCCGGC	1 cut(s)	100
KroNI	GCCGGC	1 cut(s)	102
KspAI	GTTAAC	1 cut(s)	823
LmnI	GCTCC	8 cut(s)	64, 75, 202, 302, 994, 1243, 2212, 2604
Lsp1109I	GCAGC	9 cut(s)	173, 454, 485, 753, 781, 1428, 1963, 1966, 2054
LweI	GCATC	8 cut(s)	172, 313, 556, 599, 610, 1297, 2225, 2659
MaeI	CTAG	6 cut(s)	437, 524, 576, 860, 1611, 1689
MaeII	ACGT	1 cut(s)	2063
MaeIII	GTNAC	4 cut(s)	982, 1714, 2098, 2573
MbiI	CCGCTC	1 cut(s)	305
MboII	GAAGA	7 cut(s)	629, 1400, 1670, 1902, 2068, 2386, 2465
MfeI	CAATTG	2 cut(s)	296, 1798
MflI	RGATCY	3 cut(s)	1462, 1558, 2128
MhlI	GDGCHC	5 cut(s)	69, 150, 254, 459, 538
MlsI	TGGCCA	2 cut(s)	1167, 1192
MluNI	TGGCCA	2 cut(s)	1167, 1192
Mly113I	GGCGCC	1 cut(s)	269
MlyI	GAGTC	7 cut(s)	119, 1151, 1223, 1588, 1645, 2378, 2556
MmeI	TCCRAC	5 cut(s)	96, 1102, 1119, 1186, 2501
Mox20I	TGGCCA	2 cut(s)	1167, 1192
Mph1103I	ATGCAT	2 cut(s)	549, 2218
MreI	CGCCGGCG	1 cut(s)	100
MroNI	GCCGGC	1 cut(s)	100
MroXI	GAANNNNTTC	1 cut(s)	1353
MscI	TGGCCA	2 cut(s)	1167, 1192
MseI	TTAA	8 cut(s)	822, 944, 1094, 1149, 1505, 1539, 2291, 2364
MslI	CAYNNNNRTG	2 cut(s)	450, 1539
Msp20I	TGGCCA	2 cut(s)	1167, 1192
MspA1I	CMGCKG	1 cut(s)	2462
MspI	CCGG	7 cut(s)	62, 101, 130, 212, 224, 2186, 2546
MspR9I	CCNGG	8 cut(s)	85, 130, 187, 238, 950, 1256, 1574, 2186
MunI	CAATTG	2 cut(s)	296, 1798
Mva1269I	GAATGC	2 cut(s)	180, 372
MvaI	CCWGG	6 cut(s)	85, 187, 238, 950, 1256, 1574
MvnI	CGCG	1 cut(s)	1777
NaeI	GCCGGC	1 cut(s)	102
NarI	GGCGCC	1 cut(s)	269
NciI	CCSGG	2 cut(s)	130, 2186
NgoMIV	GCCGGC	1 cut(s)	100
NlaIV	GGNNCC	4 cut(s)	66, 270, 457, 1784
NmeAIII	GCCGAG	1 cut(s)	190
NmuCI	GTSAC	4 cut(s)	982, 1714, 2098, 2573
NsbI	TGCGCA	1 cut(s)	381
NsiI	ATGCAT	2 cut(s)	549, 2218
NspI	RCATGY	3 cut(s)	547, 1004, 1751
PaeI	GCATGC	2 cut(s)	1004, 1751
PasI	CCCWGGG	1 cut(s)	84
PceI	AGGCCT	1 cut(s)	1485
PctI	GAATGC	2 cut(s)	180, 372
PdiI	GCCGGC	1 cut(s)	102
PdmI	GAANNNNTTC	1 cut(s)	1353
PfoI	TCCNGGA	1 cut(s)	1254
PinAI	ACCGGT	1 cut(s)	223
PleI	GAGTC	7 cut(s)	118, 1150, 1222, 1588, 1645, 2378, 2556
PluTI	GGCGCC	1 cut(s)	272
PpsI	GAGTC	7 cut(s)	118, 1150, 1222, 1588, 1645, 2378, 2556
PpuMI	RGGWCCY	1 cut(s)	19
PshBI	ATTAAT	1 cut(s)	1505
Psp124BI	GAGCTC	1 cut(s)	150
Psp5II	RGGWCCY	1 cut(s)	19
Psp6I	CCWGG	6 cut(s)	83, 185, 236, 948, 1254, 1572
PspFI	CCCAGC	1 cut(s)	968
PspGI	CCWGG	6 cut(s)	83, 185, 236, 948, 1254, 1572
PspN4I	GGNNCC	4 cut(s)	66, 270, 457, 1784
PspOMI	GGGCCC	1 cut(s)	455
PspPI	GGNCC	6 cut(s)	19, 189, 455, 456, 775, 1782
PspPPI	RGGWCCY	1 cut(s)	19
PstI	CTGCAG	1 cut(s)	163
PsuI	RGATCY	3 cut(s)	1462, 1558, 2128
PvuII	CAGCTG	1 cut(s)	2462
RsaI	GTAC	3 cut(s)	1927, 2166, 2272
RsaNI	GTAC	3 cut(s)	1926, 2165, 2271
RseI	CAYNNNNRTG	2 cut(s)	450, 1539
SacI	GAGCTC	1 cut(s)	150
SaqAI	TTAA	8 cut(s)	822, 944, 1094, 1149, 1505, 1539, 2291, 2364
Sau96I	GGNCC	6 cut(s)	19, 189, 455, 456, 775, 1782
SchI	GAGTC	7 cut(s)	119, 1151, 1223, 1588, 1645, 2378, 2556
ScrFI	CCNGG	8 cut(s)	85, 130, 187, 238, 950, 1256, 1574, 2186
SduI	GDGCHC	5 cut(s)	69, 150, 254, 459, 538
SfaNI	GCATC	8 cut(s)	172, 313, 556, 599, 610, 1297, 2225, 2659
SfcI	CTRYAG	1 cut(s)	159
SfoI	GGCGCC	1 cut(s)	270
SgrAI	CRCCGGYG	1 cut(s)	100
SinI	GGWCC	1 cut(s)	19
SmiMI	CAYNNNNRTG	2 cut(s)	450, 1539
SmlI	CTYRAG	2 cut(s)	770, 1487
SmoI	CTYRAG	2 cut(s)	770, 1487
SphI	GCATGC	2 cut(s)	1004, 1751
SseBI	AGGCCT	1 cut(s)	1485
SspDI	GGCGCC	1 cut(s)	268
SspMI	CTAG	6 cut(s)	437, 524, 576, 860, 1611, 1689
SstI	GAGCTC	1 cut(s)	150
StuI	AGGCCT	1 cut(s)	1485
StyD4I	CCNGG	8 cut(s)	83, 128, 185, 236, 948, 1254, 1572, 2184
StyI	CCWWGG	2 cut(s)	366, 1610
TaaI	ACNGT	5 cut(s)	1114, 1137, 1228, 1938, 2012
TaiI	ACGT	1 cut(s)	2066
TaqI	TCGA	7 cut(s)	180, 341, 428, 593, 1059, 2260, 2502
TatI	WGTACW	3 cut(s)	1925, 2164, 2270
TauI	GCSGC	3 cut(s)	61, 218, 248
Tru1I	TTAA	8 cut(s)	822, 944, 1094, 1149, 1505, 1539, 2291, 2364
Tru9I	TTAA	8 cut(s)	822, 944, 1094, 1149, 1505, 1539, 2291, 2364
TscAI	CASTG	9 cut(s)	39, 389, 873, 991, 1140, 1255, 1605, 1686, 1875
TseFI	GTSAC	4 cut(s)	982, 1714, 2098, 2573
TseI	GCWGC	9 cut(s)	161, 442, 473, 741, 794, 1416, 1976, 1979, 2042
Tsp45I	GTSAC	4 cut(s)	982, 1714, 2098, 2573
TspGWI	ACGGA	3 cut(s)	220, 534, 1077
TspRI	CASTG	9 cut(s)	39, 389, 873, 991, 1140, 1255, 1605, 1686, 1875
VneI	GTGCAC	1 cut(s)	534
VpaK11BI	GGWCC	1 cut(s)	19
VspI	ATTAAT	1 cut(s)	1505
XapI	RAATTY	5 cut(s)	52, 1722, 2020, 2137, 2483
XceI	RCATGY	3 cut(s)	547, 1004, 1751
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1580
XmaJI	CCTAGG	1 cut(s)	1610
XmiI	GTMKAC	1 cut(s)	2560
XmnI	GAANNNNTTC	1 cut(s)	1353
XspI	CTAG	6 cut(s)	437, 524, 576, 860, 1611, 1689
ZraI	GACGTC	1 cut(s)	2064
Zsp2I	ATGCAT	2 cut(s)	549, 2218

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.