Rh6AG207300

DUF4205

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6A
OG0012146
Physical Location & Seq
Forward (+)
36979459 .. 36989048
9590 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6AG207300.1

Sequence Viewer

Length: 1287 bp
ATGCATCACAATTTGGGTTCAAGGACACTTTCTAGTCCTTGTGTTGCATCGACTAACTTTTCCTCACTTTCTGAAGATGCAAAAGCAAGAGCATTGCTTAGAAGTATGAGTGAGATATTGTTCTCATGTGGAAGTAATGAAAGGGCGGTGGTTGCAACTTTGAGTGTTATTGGAGATGACGTTGAGAGGTTTGAAGGCAGCAAGGATGAAGTAATAGCAAAATCACTTGAGGGCCTTTCTATTGAATCAGCTGCTGACTTGCATAAAGTGCTAAGAGTTAACACATACACGACGCAAGAAAGTGCATTACGGGGGCTAGAAGCAGTGATTCCTGTTTTCCGAAGTCGTATGGGGGCATTGCTGTTCCTTATTTCTGCTTTGCTTTCACGAGGACTGGACTTAATCCAGGCTGATAGGGATGATCCCAGCCTACCTCTTGTCACTGCTCCATTTGGGCATGCCTCACAGGAAATTGTGAACTTACTGCTCTGCGGGCAGGCCGTCCCAAATGTTTTCGACGGAAAGATGGATTTAGGTGGTGGTATGTCTTTAAAGGGCATATCCAGAACCGTGGAAGTTGGATTCCTCACACTGTTGGAGTCCCTTAATTTCTGCAAAGTTGGCCAGTATTTGAAATGCCCCAAATGGCCAATTTGGGTAGTTGGAAGTGAGTCTCATTATACAGTTCTCTTTGCTCCTGATACCAGTGTCCAGGATGAGAATGAACTGGAAGGAAGGGAATCACAGATTCGGAAAGCTTTTGATGCACAAGATCAGAGTGGGGGTGGTGGTTTCATTAGTGTTGAAGGCTTTCATCAAGTCCTTAGGGAAACTAATGTAAAAGTTCCAAGTGAGAAGGTTGATCTTCTTTGCAGCACAGGATTTATTGTATGGAGTGAGTTCTGGCAGGTCATTTTGGATCTGGACAAGAGCATGGGAGGCCTCAAGGATTCAACTGGATTAATGGGCAAGAAGGTCTTTGATCTTTACCATTTTAATGGAATTGCAAAATCAGATCTGAATGGAAGCCAGGTAAGCTCTGGAGGCGAGACTCCAGTGCAAAGACCTAGGCTCACAAAATTGAGGGTGTCAGTTCCTCCAAGATGGACTCCTGAAGAATATATGACAGATGTAGCAGTGTCCTCTAGTGGGAATGAATCCAAAAGTCAAGTCACAGAAATTTCTAAGCCAGAGCCTCCTCAGCATGCACCTTTGGTGGACTGCATAAGAACGCGCTGGCCCCGTGCTGTTTGCAATTGGGTAGGGGATGCCCCTAGTATTGTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4205

Protein Analysis

428

Amino Acids

46.62

Weight (kDa)

5.42

Isoelectric Point (pI)

43.88

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
MINDY-3_4_CD PF13898 20 - 240 8.6e-44 Deubiquitinating enzyme MINDY-3/4, conserved domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012146)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G43690
fragaria_vesca FvH4_2g13910 FvH4_2g13910
malus_domestica MD05G1023700.v1.1 MD10G1024300.v1.1
prunus_persica Prupe.8G028200_v2.0.a1 Prupe.8G028200_v2.0.a1
pyrus_communis pycom05g01520 pycom10g01610
rosa_chinensis RchiOBHm_Chr6g0275661
rosa_laevigata RLG00000013449
rosa_multiflora Rmu_sc0011044.1_g000001
rosa_roxburghii Rroxscaffold_7G00193050
rosa_rugosa Rorug06G0095400
rosa_samantha Rh6AG207300 Rh6BG209900 Rh6CG213300 Rh6DG203000
rosa_wichuraiana Rw6G018070

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 898
AccII CGCG 1 cut(s) 1234
AciI CCGC 2 cut(s) 146, 492
AclWI GGATC 2 cut(s) 416, 927
AcoI YGGCCR 2 cut(s) 622, 647
AcsI RAATTY 1 cut(s) 1179
AcuI CTGAAG 2 cut(s) 93, 1134
AfiI CCNNNNNNNGG 1 cut(s) 1149
AgsI TTSAA 6 cut(s) 21, 194, 245, 634, 806, 954
AjnI CCWGG 3 cut(s) 405, 711, 1029
AluBI AGCT 3 cut(s) 251, 758, 1038
AluI AGCT 3 cut(s) 251, 758, 1038
Alw26I GTCTC 2 cut(s) 678, 1043
AlwI GGATC 2 cut(s) 416, 927
AlwNI CAGNNNCTG 1 cut(s) 254
AoxI GGCC 6 cut(s) 232, 498, 622, 647, 940, 1238
ApeKI GCWGC 3 cut(s) 198, 251, 873
ApoI RAATTY 1 cut(s) 1179
ArsI GACNNNNNNTTYG 2 cut(s) 1155, 1187
AseI ATTAAT 1 cut(s) 962
Asp700I GAANNNNTTC 1 cut(s) 810
AspA2I CCTAGG 1 cut(s) 1067
AspLEI GCGC 1 cut(s) 1236
AspS9I GGNCC 2 cut(s) 232, 1239
AvrII CCTAGG 1 cut(s) 1067
AxyI CCTNAGG 1 cut(s) 824
BaeI ACNNNNGTAYC 2 cut(s) 693, 726
BalI TGGCCA 2 cut(s) 624, 649
BauI CACGAG 1 cut(s) 387
BbvCI CCTCAGC 1 cut(s) 1200
BbvI GCAGC 3 cut(s) 210, 238, 885
BccI CCATC 2 cut(s) 520, 1098
BceAI ACGGC 1 cut(s) 485
BciT130I CCWGG 3 cut(s) 407, 713, 1031
BcoDI GTCTC 2 cut(s) 678, 1043
BfaI CTAG 5 cut(s) 33, 317, 1068, 1146, 1275
BfuAI ACCTGC 1 cut(s) 898
BglII AGATCT 1 cut(s) 1015
BisI GCNGC 3 cut(s) 199, 252, 874
BlnI CCTAGG 1 cut(s) 1067
BlsI GCNGC 3 cut(s) 200, 253, 875
Bme1390I CCNGG 3 cut(s) 407, 713, 1031
BmgT120I GGNCC 2 cut(s) 232, 1239
BmiI GGNNCC 1 cut(s) 1241
BmrFI CCNGG 3 cut(s) 407, 713, 1031
BmsI GCATC 5 cut(s) 13, 56, 67, 754, 1258
BpmI CTGGAG 2 cut(s) 1038, 1062
Bpu10I CCTNAGC 1 cut(s) 1200
BpuEI CTTGAG 2 cut(s) 248, 929
BsaJI CCNNGG 2 cut(s) 570, 1067
BsaXI ACNNNNNCTCC 2 cut(s) 165, 195
Bsc4I CCNNNNNNNGG 1 cut(s) 1149
Bse1I ACTGG 6 cut(s) 399, 625, 705, 732, 961, 1055
Bse21I CCTNAGG 1 cut(s) 824
Bse3DI GCAATG 2 cut(s) 92, 356
BseBI CCWGG 3 cut(s) 407, 713, 1031
BseDI CCNNGG 2 cut(s) 570, 1067
BseGI GGATG 4 cut(s) 211, 424, 721, 1273
BseLI CCNNNNNNNGG 1 cut(s) 1149
BseMI GCAATG 2 cut(s) 92, 356
BseMII CTCAG 1 cut(s) 1214
BseNI ACTGG 6 cut(s) 399, 625, 705, 732, 961, 1055
BseRI GAGGAG 1 cut(s) 1188
BseXI GCAGC 3 cut(s) 210, 238, 885
BseYI CCCAGC 1 cut(s) 425
Bsh1236I CGCG 1 cut(s) 1234
BshFI GGCC 6 cut(s) 234, 500, 624, 649, 942, 1240
BslFI GGGAC 2 cut(s) 488, 586
BslI CCNNNNNNNGG 1 cut(s) 1149
BsmAI GTCTC 2 cut(s) 678, 1043
BsmFI GGGAC 2 cut(s) 488, 586
BsnI GGCC 6 cut(s) 234, 500, 624, 649, 942, 1240
Bsp143I GATC 6 cut(s) 421, 772, 862, 919, 982, 1015
BspACI CCGC 2 cut(s) 146, 492
BspANI GGCC 6 cut(s) 234, 500, 624, 649, 942, 1240
BspCNI CTCAG 1 cut(s) 1213
BspFNI CGCG 1 cut(s) 1234
BspLI GGNNCC 1 cut(s) 1241
BspMI ACCTGC 1 cut(s) 898
BspPI GGATC 2 cut(s) 416, 927
BsrDI GCAATG 2 cut(s) 92, 356
BsrI ACTGG 6 cut(s) 399, 625, 705, 732, 961, 1055
BssECI CCNNGG 2 cut(s) 570, 1067
BssMI GATC 6 cut(s) 421, 772, 862, 919, 982, 1015
BssSI CACGAG 1 cut(s) 387
BssT1I CCWWGG 1 cut(s) 1067
Bst2BI CACGAG 1 cut(s) 387
Bst2UI CCWGG 3 cut(s) 407, 713, 1031
Bst4CI ACNGT 3 cut(s) 571, 594, 685
BstAPI GCANNNNNTGC 1 cut(s) 268
BstC8I GCNNGC 5 cut(s) 459, 494, 498, 1206, 1238
BstDEI CTNAG 5 cut(s) 98, 272, 824, 1185, 1200
BstDSI CCRYGG 1 cut(s) 570
BstF5I GGATG 4 cut(s) 211, 424, 721, 1273
BstFNI CGCG 1 cut(s) 1234
BstHHI GCGC 1 cut(s) 1236
BstKTI GATC 6 cut(s) 424, 775, 865, 922, 985, 1018
BstMAI GTCTC 2 cut(s) 678, 1043
BstMBI GATC 6 cut(s) 421, 772, 862, 919, 982, 1015
BstMWI GCNNNNNNNGC 9 cut(s) 152, 268, 493, 621, 764, 939, 1035, 1044, 1201
BstNI CCWGG 3 cut(s) 407, 713, 1031
BstNSI RCATGY 2 cut(s) 461, 1208
BstSCI CCNGG 3 cut(s) 405, 711, 1029
BstUI CGCG 1 cut(s) 1234
BstV1I GCAGC 3 cut(s) 210, 238, 885
BstX2I RGATCY 2 cut(s) 919, 1015
BstXI CCANNNNNNTGG 2 cut(s) 571, 998
BstYI RGATCY 2 cut(s) 919, 1015
Bsu36I CCTNAGG 1 cut(s) 824
BsuRI GGCC 6 cut(s) 234, 500, 624, 649, 942, 1240
BtgI CCRYGG 1 cut(s) 570
BtsCI GGATG 4 cut(s) 211, 424, 721, 1273
BtsI GCAGTG 3 cut(s) 330, 441, 1143
BtsIMutI CAGTG 6 cut(s) 330, 441, 590, 712, 1062, 1143
BveI ACCTGC 1 cut(s) 898
Cac8I GCNNGC 5 cut(s) 459, 494, 498, 1206, 1238
CaiI CAGNNNCTG 1 cut(s) 254
CfoI GCGC 1 cut(s) 1236
Cfr13I GGNCC 2 cut(s) 232, 1239
CseI GACGC 1 cut(s) 301
CviAII CATG 4 cut(s) 126, 458, 934, 1205
DdeI CTNAG 5 cut(s) 98, 272, 824, 1185, 1200
DpnI GATC 6 cut(s) 423, 774, 864, 921, 984, 1017
DpnII GATC 6 cut(s) 421, 772, 862, 919, 982, 1015
DraI TTTAAA 1 cut(s) 552
EaeI YGGCCR 2 cut(s) 622, 647
Eco130I CCWWGG 1 cut(s) 1067
Eco147I AGGCCT 1 cut(s) 942
Eco57I CTGAAG 2 cut(s) 93, 1134
Eco81I CCTNAGG 1 cut(s) 824
EcoO109I RGGNCCY 1 cut(s) 232
EcoRII CCWGG 3 cut(s) 405, 711, 1029
EcoT14I CCWWGG 1 cut(s) 1067
EcoT22I ATGCAT 1 cut(s) 6
ErhI CCWWGG 1 cut(s) 1067
FaeI CATG 4 cut(s) 129, 461, 937, 1208
FalI AAGNNNNNCTT 2 cut(s) 962, 994
FaqI GGGAC 2 cut(s) 488, 586
FatI CATG 4 cut(s) 125, 457, 933, 1204
FauI CCCGC 1 cut(s) 485
Fnu4HI GCNGC 3 cut(s) 199, 252, 874
FokI GGATG 4 cut(s) 218, 431, 728, 1280
Fsp4HI GCNGC 3 cut(s) 199, 252, 874
FspBI CTAG 5 cut(s) 33, 317, 1068, 1146, 1275
GlaI GCGC 1 cut(s) 1235
GluI GCNGC 3 cut(s) 199, 252, 874
GsaI CCCAGC 1 cut(s) 429
GsuI CTGGAG 2 cut(s) 1038, 1062
HaeIII GGCC 6 cut(s) 234, 500, 624, 649, 942, 1240
HgaI GACGC 1 cut(s) 301
HhaI GCGC 1 cut(s) 1236
Hin1II CATG 4 cut(s) 129, 461, 937, 1208
Hin6I GCGC 1 cut(s) 1234
HinP1I GCGC 1 cut(s) 1234
HincII GTYRAC 1 cut(s) 280
HindII GTYRAC 1 cut(s) 280
HindIII AAGCTT 1 cut(s) 756
HpaI GTTAAC 1 cut(s) 280
Hpy166II GTNNAC 3 cut(s) 280, 478, 1219
Hpy188I TCNGA 7 cut(s) 73, 341, 753, 777, 1015, 1020, 1286
Hpy188III TCNNGA 6 cut(s) 387, 564, 698, 923, 1041, 1112
Hpy8I GTNNAC 3 cut(s) 280, 478, 1219
Hpy99I CGWCG 2 cut(s) 295, 521
HpyAV CCTTC 6 cut(s) 188, 725, 729, 800, 850, 967
HpyCH4III ACNGT 3 cut(s) 571, 594, 685
HpyCH4IV ACGT 1 cut(s) 180
HpyF10VI GCNNNNNNNGC 9 cut(s) 152, 268, 493, 621, 764, 939, 1035, 1044, 1201
HpyF3I CTNAG 5 cut(s) 98, 272, 824, 1185, 1200
HpySE526I ACGT 1 cut(s) 180
Hsp92II CATG 4 cut(s) 129, 461, 937, 1208
HspAI GCGC 1 cut(s) 1234
KspAI GTTAAC 1 cut(s) 280
Kzo9I GATC 6 cut(s) 421, 772, 862, 919, 982, 1015
LmnI GCTCC 2 cut(s) 451, 700
Lsp1109I GCAGC 3 cut(s) 210, 238, 885
LweI GCATC 5 cut(s) 13, 56, 67, 754, 1258
MaeI CTAG 5 cut(s) 33, 317, 1068, 1146, 1275
MaeII ACGT 1 cut(s) 180
MaeIII GTNAC 2 cut(s) 439, 1171
MalI GATC 6 cut(s) 423, 774, 864, 921, 984, 1017
MboI GATC 6 cut(s) 421, 772, 862, 919, 982, 1015
MboII GAAGA 3 cut(s) 86, 857, 1127
MfeI CAATTG 1 cut(s) 1255
MflI RGATCY 2 cut(s) 919, 1015
MlsI TGGCCA 2 cut(s) 624, 649
MluCI AATT 8 cut(s) 10, 471, 607, 651, 1002, 1079, 1179, 1255
MluNI TGGCCA 2 cut(s) 624, 649
MlyI GAGTC 4 cut(s) 608, 680, 1045, 1102
MmeI TCCRAC 3 cut(s) 559, 576, 643
Mox20I TGGCCA 2 cut(s) 624, 649
Mph1103I ATGCAT 1 cut(s) 6
MroXI GAANNNNTTC 1 cut(s) 810
MscI TGGCCA 2 cut(s) 624, 649
MseI TTAA 6 cut(s) 279, 401, 551, 606, 962, 996
MslI CAYNNNNRTG 1 cut(s) 996
Msp20I TGGCCA 2 cut(s) 624, 649
MspA1I CMGCKG 1 cut(s) 251
MspR9I CCNGG 3 cut(s) 407, 713, 1031
MunI CAATTG 1 cut(s) 1255
MvaI CCWGG 3 cut(s) 407, 713, 1031
MvnI CGCG 1 cut(s) 1234
MwoI GCNNNNNNNGC 9 cut(s) 152, 268, 493, 621, 764, 939, 1035, 1044, 1201
NdeII GATC 6 cut(s) 421, 772, 862, 919, 982, 1015
NlaIII CATG 4 cut(s) 129, 461, 937, 1208
NlaIV GGNNCC 1 cut(s) 1241
NmuCI GTSAC 2 cut(s) 439, 1171
NsiI ATGCAT 1 cut(s) 6
NspI RCATGY 2 cut(s) 461, 1208
PaeI GCATGC 2 cut(s) 461, 1208
PceI AGGCCT 1 cut(s) 942
PdmI GAANNNNTTC 1 cut(s) 810
PfeI GAWTC 7 cut(s) 245, 328, 582, 740, 748, 950, 1157
PfoI TCCNGGA 1 cut(s) 711
PkrI GCNGC 3 cut(s) 200, 253, 875
PleI GAGTC 4 cut(s) 607, 679, 1045, 1102
PpsI GAGTC 4 cut(s) 607, 679, 1045, 1102
PshBI ATTAAT 1 cut(s) 962
Psp6I CCWGG 3 cut(s) 405, 711, 1029
PspFI CCCAGC 1 cut(s) 425
PspGI CCWGG 3 cut(s) 405, 711, 1029
PspN4I GGNNCC 1 cut(s) 1241
PspPI GGNCC 2 cut(s) 232, 1239
PstNI CAGNNNCTG 1 cut(s) 254
PsuI RGATCY 2 cut(s) 919, 1015
PvuII CAGCTG 1 cut(s) 251
RseI CAYNNNNRTG 1 cut(s) 996
SaqAI TTAA 6 cut(s) 279, 401, 551, 606, 962, 996
SatI GCNGC 3 cut(s) 199, 252, 874
Sau3AI GATC 6 cut(s) 421, 772, 862, 919, 982, 1015
Sau96I GGNCC 2 cut(s) 232, 1239
SchI GAGTC 4 cut(s) 608, 680, 1045, 1102
ScrFI CCNGG 3 cut(s) 407, 713, 1031
SfaNI GCATC 5 cut(s) 13, 56, 67, 754, 1258
SmiMI CAYNNNNRTG 1 cut(s) 996
SmlI CTYRAG 2 cut(s) 227, 944
SmoI CTYRAG 2 cut(s) 227, 944
SphI GCATGC 2 cut(s) 461, 1208
Sse9I AATT 8 cut(s) 10, 471, 607, 651, 1002, 1079, 1179, 1255
SseBI AGGCCT 1 cut(s) 942
SsiI CCGC 2 cut(s) 146, 492
SspMI CTAG 5 cut(s) 33, 317, 1068, 1146, 1275
StuI AGGCCT 1 cut(s) 942
StyD4I CCNGG 3 cut(s) 405, 711, 1029
StyI CCWWGG 1 cut(s) 1067
TaaI ACNGT 3 cut(s) 571, 594, 685
TaiI ACGT 1 cut(s) 183
TaqI TCGA 2 cut(s) 50, 516
TasI AATT 8 cut(s) 10, 471, 607, 651, 1002, 1079, 1179, 1255
TfiI GAWTC 7 cut(s) 245, 328, 582, 740, 748, 950, 1157
Tru1I TTAA 6 cut(s) 279, 401, 551, 606, 962, 996
Tru9I TTAA 6 cut(s) 279, 401, 551, 606, 962, 996
TscAI CASTG 6 cut(s) 330, 448, 597, 712, 1062, 1143
TseFI GTSAC 2 cut(s) 439, 1171
TseI GCWGC 3 cut(s) 198, 251, 873
Tsp45I GTSAC 2 cut(s) 439, 1171
TspDTI ATGAA 6 cut(s) 153, 222, 738, 784, 803, 1170
TspGWI ACGGA 1 cut(s) 534
TspRI CASTG 6 cut(s) 330, 448, 597, 712, 1062, 1143
VspI ATTAAT 1 cut(s) 962
XapI RAATTY 1 cut(s) 1179
XceI RCATGY 2 cut(s) 461, 1208
XcmI CCANNNNNNNNNTGG 1 cut(s) 1037
XmaJI CCTAGG 1 cut(s) 1067
XmnI GAANNNNTTC 1 cut(s) 810
XspI CTAG 5 cut(s) 33, 317, 1068, 1146, 1275
Zsp2I ATGCAT 1 cut(s) 6
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.