Rmu_sc0011709.1_g000010

rhodanese-like domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0011709.1
OG0012988
Physical Location & Seq
Reverse (-)
51073 .. 53628
2556 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0011709.1_g000010.1.cds

Sequence Viewer

Length: 1419 bp
atgctaaggtacagagcacctccatcactctccctgaggatgctatcttcttcttcaccctcactgcactctctaaaccctaaccctaaatcacaccccgcctcttcaattcccgattcctcccccaatcgccgtcttcaactcttctctaatccaattccaaacccaattgggatttttaaacactgtaaccctcaaagtatgactctttctagatgctcatccgggtcgaccaacccagtacccatttcgagcttacccgaatcggatgatccggattcgaaagttctggtcgtcgtctccttctacaagttcgctgattttcctgactgtgctcgtctgcggcaacccttgaagcaactctgcgaggaattggtaccccatttttcattatcagttctttatttgattcattttagtgggatcatacttgcaccagaagggatcaatggcagcatatgcgggggcagagagtcagtggagaaagttctggagttcattcaaagtgatgagcgcctaagggggctgagaagattggagtcacctgtgagtccggaggatgaagccattcatcacggacacagtagcagttctcctctggcagcaggggaggatgcacccttccgatgggatcatgtgagggtcaagttgaagaaggagattgttacccttggcatgcctgctgtgtcacctactgaaaaagttgggaagtatgtgagtccaagtgaatggaatgagctgattagtgatccagatacggttgtaattgatgtgcgcaataactatgaaactagaattgggaagtttaagggagcagttgatccgtgtactaaagcattccgggagttcccgtcttgggtagaggatcagttccaacattctgaaccggagaatggacatacagaaacaaatggcaacagttcagatggaagcaccaaaattcagccagggatttcaaaaccaaaaacaccaccacgagttgccatgtactgtactgggggcattagatgtgagaaagcttctagttatctccttagcaaaggttttgaagaggtttatcatctagaaggtgggattctgaagtacctcgaggaagttccagagaaagagagcctatgggagggagagtgctttgtctttgacaagagagtctctgttgagcacggtttgatacaaggaaatcacaagttatgctatgggtgtaagcaaccagtcagtgatgctgatatggagtctcctcagtgggaatacggggtttcatgtccctattgttactcgtcaaaaaccatcgaagaaaaggaaagggcaagagctcgacaaaggcagtttgagacatggggtatcattggcggtccagacaagggccgtaagccagatactatcaaacagaggtctactcaactgtcaaattcaatttag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Rhodanese

Protein Analysis

472

Amino Acids

52.6

Weight (kDa)

6.42

Isoelectric Point (pI)

52.4

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012988)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G40760
fragaria_vesca FvH4_7g26040
malus_domestica MD01G1168900.v1.1 MD07G1234800.v1.1
prunus_persica Prupe.2G265100_v2.0.a1
pyrus_communis pycom01g18170 pycom07g21240
rosa_chinensis RchiOBHm_Chr1g0372451
rosa_laevigata RLG00000026897
rosa_multiflora Rmu_sc0011709.1_g000010 Rmu_sc0019374.1_g000001
rosa_roxburghii Rroxscaffold_4G00284910
rosa_rugosa Rorug01G0372000
rosa_samantha Rh1AG380500 Rh1BG344100 Rh1CG357500 Rh1DG375300
rosa_wichuraiana Rw1G033460

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 1148
AbsI CCTCGAGG 1 cut(s) 1088
Acc16I TGCGCA 1 cut(s) 776
Acc65I GGTACC 1 cut(s) 376
AccB1I GGYRCC 1 cut(s) 376
AccI GTMKAC 2 cut(s) 230, 1394
AccIII TCCGGA 2 cut(s) 274, 553
AciI CCGC 4 cut(s) 99, 343, 462, 1350
AclWI GGATC 7 cut(s) 266, 431, 452, 639, 743, 815, 873
AcsI RAATTY 2 cut(s) 939, 1408
AcuI CTGAAG 1 cut(s) 1100
AfaI GTAC 7 cut(s) 11, 243, 378, 829, 989, 994, 1085
AfiI CCNNNNNNNGG 5 cut(s) 627, 856, 893, 1120, 1361
AgsI TTSAA 8 cut(s) 108, 140, 355, 503, 652, 957, 1049, 1413
AjnI CCWGG 1 cut(s) 946
AjuI GAANNNNNNNTTGG 2 cut(s) 780, 812
AluBI AGCT 4 cut(s) 255, 739, 1019, 1313
AluI AGCT 4 cut(s) 255, 739, 1019, 1313
Alw21I GWGCWC 4 cut(s) 19, 337, 1164, 1315
Alw26I GTCTC 4 cut(s) 304, 1156, 1239, 1325
AlwI GGATC 7 cut(s) 266, 431, 452, 639, 743, 815, 873
Ama87I CYCGRG 1 cut(s) 1088
Aor13HI TCCGGA 2 cut(s) 274, 553
AoxI GGCC 1 cut(s) 1363
ApeKI GCWGC 2 cut(s) 453, 602
ApoI RAATTY 2 cut(s) 939, 1408
Asp700I GAANNNNTTC 1 cut(s) 567
Asp718I GGTACC 1 cut(s) 376
AspLEI GCGC 2 cut(s) 516, 777
AspS9I GGNCC 2 cut(s) 1352, 1363
AsuC2I CCSGG 2 cut(s) 226, 842
AsuHPI GGTGA 3 cut(s) 48, 534, 681
AsuII TTCGAA 1 cut(s) 281
AvaI CYCGRG 1 cut(s) 1088
AvaII GGWCC 1 cut(s) 1352
AxyI CCTNAGG 2 cut(s) 35, 518
BaeI ACNNNNGTAYC 2 cut(s) 747, 780
BanI GGYRCC 1 cut(s) 376
BanII GRGCYC 1 cut(s) 1315
BauI CACGAG 1 cut(s) 975
BbsI GAAGAC 1 cut(s) 128
Bbv12I GWGCWC 4 cut(s) 19, 337, 1164, 1315
BbvI GCAGC 2 cut(s) 465, 614
BccI CCATC 4 cut(s) 31, 621, 920, 1295
BceAI ACGGC 2 cut(s) 117, 1350
BciT130I CCWGG 1 cut(s) 948
BcnI CCSGG 2 cut(s) 226, 842
BcoDI GTCTC 4 cut(s) 304, 1156, 1239, 1325
BfaI CTAG 4 cut(s) 213, 792, 1023, 1064
BfoI RGCGCY 1 cut(s) 517
BisI GCNGC 3 cut(s) 344, 454, 603
BlsI GCNGC 3 cut(s) 345, 455, 604
Bme1390I CCNGG 3 cut(s) 226, 842, 948
Bme18I GGWCC 1 cut(s) 1352
BmeT110I CYCGRG 1 cut(s) 1088
BmgT120I GGNCC 2 cut(s) 1352, 1363
BmiI GGNNCC 1 cut(s) 378
BmrFI CCNGG 3 cut(s) 226, 842, 948
BmrI ACTGGG 2 cut(s) 233, 1005
BmsI GCATC 4 cut(s) 30, 206, 604, 1210
BmuI ACTGGG 2 cut(s) 233, 1005
BpiI GAAGAC 1 cut(s) 128
BplI GAGNNNNNCTC 2 cut(s) 1381, 1413
BpmI CTGGAG 1 cut(s) 512
Bpu10I CCTNAGC 2 cut(s) 5, 1034
Bpu14I TTCGAA 1 cut(s) 281
BpuMI CCSGG 2 cut(s) 226, 842
BsaBI GATNNNNATC 1 cut(s) 220
BsaJI CCNNGG 2 cut(s) 670, 947
BsaWI WCCGGW 3 cut(s) 274, 553, 886
BsaXI ACNNNNNCTCC 4 cut(s) 836, 866, 1112, 1142
Bsc4I CCNNNNNNNGG 5 cut(s) 627, 856, 893, 1120, 1361
Bse1I ACTGG 3 cut(s) 239, 1000, 1211
Bse21I CCTNAGG 2 cut(s) 35, 518
Bse8I GATNNNNATC 1 cut(s) 220
BseAI TCCGGA 2 cut(s) 274, 553
BseBI CCWGG 1 cut(s) 948
BseDI CCNNGG 2 cut(s) 670, 947
BseGI GGATG 5 cut(s) 45, 221, 274, 565, 619
BseJI GATNNNNATC 1 cut(s) 220
BseLI CCNNNNNNNGG 5 cut(s) 627, 856, 893, 1120, 1361
BseMII CTCAG 3 cut(s) 26, 518, 1253
BseNI ACTGG 3 cut(s) 239, 1000, 1211
BseRI GAGGAG 2 cut(s) 585, 1227
BseXI GCAGC 2 cut(s) 465, 614
BsgI GTGCAG 1 cut(s) 50
BshFI GGCC 1 cut(s) 1365
BshNI GGYRCC 1 cut(s) 376
BsiHKAI GWGCWC 4 cut(s) 19, 337, 1164, 1315
BsiHKCI CYCGRG 1 cut(s) 1088
BsiSI CCGG 5 cut(s) 225, 275, 554, 841, 887
BslFI GGGAC 1 cut(s) 1248
BslI CCNNNNNNNGG 5 cut(s) 627, 856, 893, 1120, 1361
BsmAI GTCTC 4 cut(s) 304, 1156, 1239, 1325
BsmBI CGTCTC 1 cut(s) 304
BsmFI GGGAC 1 cut(s) 1248
BsmI GAATGC 1 cut(s) 836
BsnI GGCC 1 cut(s) 1365
BsoBI CYCGRG 1 cut(s) 1088
Bsp119I TTCGAA 1 cut(s) 281
Bsp1286I GDGCHC 4 cut(s) 19, 337, 1164, 1315
Bsp13I TCCGGA 2 cut(s) 274, 553
Bsp143I GATC 7 cut(s) 271, 423, 444, 631, 748, 820, 865
BspACI CCGC 4 cut(s) 99, 343, 462, 1350
BspANI GGCC 1 cut(s) 1365
BspCNI CTCAG 3 cut(s) 27, 519, 1252
BspEI TCCGGA 2 cut(s) 274, 553
BspLI GGNNCC 1 cut(s) 378
BspPI GGATC 7 cut(s) 266, 431, 452, 639, 743, 815, 873
BspT104I TTCGAA 1 cut(s) 281
BspT107I GGYRCC 1 cut(s) 376
BsrI ACTGG 3 cut(s) 239, 1000, 1211
BssECI CCNNGG 2 cut(s) 670, 947
BssMI GATC 7 cut(s) 271, 423, 444, 631, 748, 820, 865
BssSI CACGAG 1 cut(s) 975
BssT1I CCWWGG 1 cut(s) 670
Bst2BI CACGAG 1 cut(s) 975
Bst2UI CCWGG 1 cut(s) 948
Bst4CI ACNGT 8 cut(s) 188, 332, 584, 760, 920, 992, 1166, 1404
Bst6I CTCTTC 3 cut(s) 109, 149, 1044
BstAPI GCANNNNNTGC 1 cut(s) 459
BstBI TTCGAA 1 cut(s) 281
BstC8I GCNNGC 2 cut(s) 677, 681
BstDEI CTNAG 6 cut(s) 5, 35, 518, 527, 1034, 1239
BstENI CCTNNNNNAGG 1 cut(s) 1118
BstF5I GGATG 5 cut(s) 45, 221, 274, 565, 619
BstH2I RGCGCY 1 cut(s) 517
BstHHI GCGC 2 cut(s) 516, 777
BstKTI GATC 7 cut(s) 274, 426, 447, 634, 751, 823, 868
BstMAI GTCTC 4 cut(s) 304, 1156, 1239, 1325
BstMBI GATC 7 cut(s) 271, 423, 444, 631, 748, 820, 865
BstMWI GCNNNNNNNGC 1 cut(s) 459
BstNI CCWGG 1 cut(s) 948
BstNSI RCATGY 1 cut(s) 679
BstSCI CCNGG 3 cut(s) 224, 840, 946
BstV1I GCAGC 2 cut(s) 465, 614
BstV2I GAAGAC 1 cut(s) 128
BstXI CCANNNNNNTGG 1 cut(s) 729
Bsu36I CCTNAGG 2 cut(s) 35, 518
BsuRI GGCC 1 cut(s) 1365
BtsCI GGATG 5 cut(s) 45, 221, 274, 565, 619
BtsI GCAGTG 1 cut(s) 62
BtsIMutI CAGTG 5 cut(s) 62, 184, 483, 1222, 1247
Cac8I GCNNGC 2 cut(s) 677, 681
CfoI GCGC 2 cut(s) 516, 777
Cfr13I GGNCC 2 cut(s) 1352, 1363
Csp6I GTAC 7 cut(s) 10, 242, 377, 828, 988, 993, 1084
CviAII CATG 5 cut(s) 635, 676, 985, 1260, 1335
CviQI GTAC 7 cut(s) 10, 242, 377, 828, 988, 993, 1084
DdeI CTNAG 6 cut(s) 5, 35, 518, 527, 1034, 1239
DpnI GATC 7 cut(s) 273, 425, 446, 633, 750, 822, 867
DpnII GATC 7 cut(s) 271, 423, 444, 631, 748, 820, 865
DraI TTTAAA 1 cut(s) 181
DrdI GACNNNNNNGTC 1 cut(s) 1148
DseDI GACNNNNNNGTC 1 cut(s) 1148
Eam1104I CTCTTC 3 cut(s) 109, 149, 1044
EarI CTCTTC 3 cut(s) 109, 149, 1044
Ecl136II GAGCTC 1 cut(s) 1313
Eco130I CCWWGG 1 cut(s) 670
Eco24I GRGCYC 1 cut(s) 1315
Eco47I GGWCC 1 cut(s) 1352
Eco53kI GAGCTC 1 cut(s) 1313
Eco57I CTGAAG 1 cut(s) 1100
Eco81I CCTNAGG 2 cut(s) 35, 518
Eco88I CYCGRG 1 cut(s) 1088
EcoICRI GAGCTC 1 cut(s) 1313
EcoNI CCTNNNNNAGG 1 cut(s) 1118
EcoRII CCWGG 1 cut(s) 946
EcoT14I CCWWGG 1 cut(s) 670
EcoT38I GRGCYC 1 cut(s) 1315
ErhI CCWWGG 1 cut(s) 670
Esp3I CGTCTC 1 cut(s) 304
FaeI CATG 5 cut(s) 638, 679, 988, 1263, 1338
FaqI GGGAC 1 cut(s) 1248
FatI CATG 5 cut(s) 634, 675, 984, 1259, 1334
FauI CCCGC 2 cut(s) 106, 455
FauNDI CATATG 1 cut(s) 458
FblI GTMKAC 2 cut(s) 230, 1394
Fnu4HI GCNGC 3 cut(s) 344, 454, 603
FokI GGATG 5 cut(s) 52, 208, 281, 572, 626
FriOI GRGCYC 1 cut(s) 1315
Fsp4HI GCNGC 3 cut(s) 344, 454, 603
FspBI CTAG 4 cut(s) 213, 792, 1023, 1064
FspI TGCGCA 1 cut(s) 776
GlaI GCGC 2 cut(s) 515, 776
GluI GCNGC 3 cut(s) 344, 454, 603
GsuI CTGGAG 1 cut(s) 512
HaeII RGCGCY 1 cut(s) 517
HaeIII GGCC 1 cut(s) 1365
HapII CCGG 5 cut(s) 225, 275, 554, 841, 887
HhaI GCGC 2 cut(s) 516, 777
Hin1II CATG 5 cut(s) 638, 679, 988, 1263, 1338
Hin6I GCGC 2 cut(s) 514, 775
HinP1I GCGC 2 cut(s) 514, 775
HincII GTYRAC 1 cut(s) 231
HindII GTYRAC 1 cut(s) 231
HindIII AAGCTT 1 cut(s) 1017
HpaII CCGG 5 cut(s) 225, 275, 554, 841, 887
HphI GGTGA 3 cut(s) 48, 534, 681
Hpy166II GTNNAC 3 cut(s) 231, 828, 1395
Hpy188I TCNGA 5 cut(s) 268, 626, 883, 925, 1080
Hpy8I GTNNAC 3 cut(s) 231, 828, 1395
Hpy99I CGWCG 1 cut(s) 299
HpyAV CCTTC 5 cut(s) 313, 434, 631, 649, 1061
HpyCH4III ACNGT 8 cut(s) 188, 332, 584, 760, 920, 992, 1166, 1404
HpyCH4V TGCA 3 cut(s) 67, 434, 617
HpyF10VI GCNNNNNNNGC 1 cut(s) 459
HpyF3I CTNAG 6 cut(s) 5, 35, 518, 527, 1034, 1239
Hsp92II CATG 5 cut(s) 638, 679, 988, 1263, 1338
HspAI GCGC 2 cut(s) 514, 775
Kpn2I TCCGGA 2 cut(s) 274, 553
KpnI GGTACC 1 cut(s) 380
Kzo9I GATC 7 cut(s) 271, 423, 444, 631, 748, 820, 865
LmnI GCTCC 1 cut(s) 812
Lsp1109I GCAGC 2 cut(s) 465, 614
LweI GCATC 4 cut(s) 30, 206, 604, 1210
MaeI CTAG 4 cut(s) 213, 792, 1023, 1064
MaeIII GTNAC 5 cut(s) 188, 540, 664, 687, 1271
MalI GATC 7 cut(s) 273, 425, 446, 633, 750, 822, 867
MboI GATC 7 cut(s) 271, 423, 444, 631, 748, 820, 865
MfeI CAATTG 1 cut(s) 168
MhlI GDGCHC 4 cut(s) 19, 337, 1164, 1315
MluCI AATT 9 cut(s) 108, 156, 168, 371, 765, 795, 939, 1408, 1413
MlyI GAGTC 7 cut(s) 199, 482, 548, 559, 727, 1158, 1241
MmeI TCCRAC 1 cut(s) 898
MroI TCCGGA 2 cut(s) 274, 553
MroXI GAANNNNTTC 1 cut(s) 567
MseI TTAA 2 cut(s) 180, 807
MslI CAYNNNNRTG 1 cut(s) 417
MspI CCGG 5 cut(s) 225, 275, 554, 841, 887
MspR9I CCNGG 3 cut(s) 226, 842, 948
MunI CAATTG 1 cut(s) 168
Mva1269I GAATGC 1 cut(s) 836
MvaI CCWGG 1 cut(s) 948
MwoI GCNNNNNNNGC 1 cut(s) 459
NciI CCSGG 2 cut(s) 226, 842
NdeI CATATG 1 cut(s) 458
NdeII GATC 7 cut(s) 271, 423, 444, 631, 748, 820, 865
NlaIII CATG 5 cut(s) 638, 679, 988, 1263, 1338
NlaIV GGNNCC 1 cut(s) 378
NmuCI GTSAC 2 cut(s) 540, 687
NsbI TGCGCA 1 cut(s) 776
NspI RCATGY 1 cut(s) 679
NspV TTCGAA 1 cut(s) 281
PaeI GCATGC 1 cut(s) 679
PaeR7I CTCGAG 1 cut(s) 1088
PctI GAATGC 1 cut(s) 836
PdmI GAANNNNTTC 1 cut(s) 567
PfeI GAWTC 5 cut(s) 116, 263, 278, 409, 1075
PfoI TCCNGGA 1 cut(s) 840
PkrI GCNGC 3 cut(s) 345, 455, 604
PleI GAGTC 7 cut(s) 199, 481, 547, 558, 726, 1157, 1240
PpsI GAGTC 7 cut(s) 199, 481, 547, 558, 726, 1157, 1240
Psp124BI GAGCTC 1 cut(s) 1315
Psp6I CCWGG 1 cut(s) 946
PspGI CCWGG 1 cut(s) 946
PspN4I GGNNCC 1 cut(s) 378
PspPI GGNCC 2 cut(s) 1352, 1363
PspXI VCTCGAGB 1 cut(s) 1088
RsaI GTAC 7 cut(s) 11, 243, 378, 829, 989, 994, 1085
RsaNI GTAC 7 cut(s) 10, 242, 377, 828, 988, 993, 1084
RseI CAYNNNNRTG 1 cut(s) 417
SacI GAGCTC 1 cut(s) 1315
SalI GTCGAC 1 cut(s) 229
SaqAI TTAA 2 cut(s) 180, 807
SatI GCNGC 3 cut(s) 344, 454, 603
Sau3AI GATC 7 cut(s) 271, 423, 444, 631, 748, 820, 865
Sau96I GGNCC 2 cut(s) 1352, 1363
SchI GAGTC 7 cut(s) 199, 482, 548, 559, 727, 1158, 1241
ScrFI CCNGG 3 cut(s) 226, 842, 948
SduI GDGCHC 4 cut(s) 19, 337, 1164, 1315
SfaNI GCATC 4 cut(s) 30, 206, 604, 1210
Sfr274I CTCGAG 1 cut(s) 1088
SfuI TTCGAA 1 cut(s) 281
SinI GGWCC 1 cut(s) 1352
SlaI CTCGAG 1 cut(s) 1088
SmiMI CAYNNNNRTG 1 cut(s) 417
SmlI CTYRAG 1 cut(s) 1088
SmoI CTYRAG 1 cut(s) 1088
SphI GCATGC 1 cut(s) 679
Sse9I AATT 9 cut(s) 108, 156, 168, 371, 765, 795, 939, 1408, 1413
SsiI CCGC 4 cut(s) 99, 343, 462, 1350
SspMI CTAG 4 cut(s) 213, 792, 1023, 1064
SstI GAGCTC 1 cut(s) 1315
StyD4I CCNGG 3 cut(s) 224, 840, 946
StyI CCWWGG 1 cut(s) 670
TaaI ACNGT 8 cut(s) 188, 332, 584, 760, 920, 992, 1166, 1404
TaqI TCGA 6 cut(s) 230, 251, 281, 1089, 1290, 1315
TasI AATT 9 cut(s) 108, 156, 168, 371, 765, 795, 939, 1408, 1413
TatI WGTACW 3 cut(s) 827, 987, 992
TauI GCSGC 1 cut(s) 346
TfiI GAWTC 5 cut(s) 116, 263, 278, 409, 1075
Tru1I TTAA 2 cut(s) 180, 807
Tru9I TTAA 2 cut(s) 180, 807
TscAI CASTG 5 cut(s) 69, 191, 483, 1222, 1247
TseFI GTSAC 2 cut(s) 540, 687
TseI GCWGC 2 cut(s) 453, 602
Tsp45I GTSAC 2 cut(s) 540, 687
TspDTI ATGAA 7 cut(s) 378, 401, 487, 560, 576, 801, 1248
TspGWI ACGGA 2 cut(s) 591, 813
TspRI CASTG 5 cut(s) 69, 191, 483, 1222, 1247
VpaK11BI GGWCC 1 cut(s) 1352
XagI CCTNNNNNAGG 1 cut(s) 1118
XapI RAATTY 2 cut(s) 939, 1408
XbaI TCTAGA 2 cut(s) 212, 1063
XceI RCATGY 1 cut(s) 679
XhoI CTCGAG 1 cut(s) 1088
XmiI GTMKAC 2 cut(s) 230, 1394
XmnI GAANNNNTTC 1 cut(s) 567
XspI CTAG 4 cut(s) 213, 792, 1023, 1064
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.