Rmu_sc0011796.1_g000011

At4g06744-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0011796.1
OG0014329
Physical Location & Seq
Reverse (-)
41592 .. 42890
1299 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0011796.1_g000011.1.cds

Sequence Viewer

Length: 1299 bp
atgagaagaagcgcttcaaccaaagctttgtttttaaccttcttcttcttcttcctcctatcatgcctcattgcaaactctgcaactcacaacattactagaagaagtagcaaagacaaaacccacagaaagaagtgtcctataaccagtagtctactccagtgttcgaaaacacgaccgccaccaccaccaccaccaccagatgtaccaaacccacaaaaagtgctctcatttgcagaccaaaggcttcaagtggtatacccagtcattcaaaaattcaagtccatcatcacctcagatcctctcaacatcaccaaaacttgggtaggatcagatatatgcaaatacaaaggcttctactgtgacaatccaccatacaacttatctgcaatcgcgctagcctccatcgacttcaatggcttccaactcggtgcttcctcccttgatgggtttcttgatcagctccctgatattgctctgttccatgcaaactccaacaacttttccggcaccatttcctccaaaattgccaacctcccctacctctatgagcttgacattagcaacaacttattctccggtcctttcccaaccgcagttctaggcatgaacggcttaactttcttggacataaggttcaatttcttcaccggctctgttccgcctcagattttcactcaggaccttgatgctctcttcctcaacaacaacaacttcatgcagacccttccggataacctaggcagctcccatataatcctcctcactttggcaaacaacaacttcaatggccctattccaagcagcattgcaaaagctctgtcttctctcactgaagttctgcttctcaataaccagttaacaggttgtttgccttatgagctaggttttttaaaggaggccatagtgtttgatgctagcaacaatcagttaactggtccgttaccattctctttggcttgtctagacaaagtggagcagctaagttttgctggaaacttattgtttggcttggtgccggaggtgatctgtgatcagctgctgaatctggcaaacttttcgctgtccaataattacttcatccatgttggtccaatatgtcaaagtttgatccagagaggactgcttgatgttactaacaactgcattcctggtcttccattccaaagatcggtagaagaatgtgcagatttcttcgctcatcccatgttctgtccgaatatggggtcttatacctgtattccctgcagtaagtttccttatacttcttttgttcatcaagtggatcctacaccttga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

432

Amino Acids

47.64

Weight (kDa)

6.37

Isoelectric Point (pI)

35.77

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014329)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G06744
fragaria_vesca FvH4_2g33930
malus_domestica MD15G1078100.v1.1
prunus_persica Prupe.1G431200_v2.0.a1
pyrus_communis pycom08g07700 pycom15g07290
rosa_chinensis RchiOBHm_Chr6g0308481
rosa_laevigata RLG00000010639
rosa_multiflora Rmu_sc0001485.1_g000008 Rmu_sc0011796.1_g000011
rosa_roxburghii Rroxscaffold_7G00160090
rosa_rugosa Rorug06G0367100
rosa_samantha Rh6AG476900 Rh6BG487100 Rh6CG492200 Rh6DG478300
rosa_wichuraiana Rw6G041600

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 509, 1015
AccB7I CCANNNNNTGG 1 cut(s) 321
AccI GTMKAC 2 cut(s) 154, 258
AccII CGCG 1 cut(s) 395
AccIII TCCGGA 1 cut(s) 730
AciI CCGC 3 cut(s) 179, 594, 662
AclWI GGATC 5 cut(s) 293, 337, 1105, 1280, 1293
AcsI RAATTY 1 cut(s) 275
AcuI CTGAAG 1 cut(s) 855
AfaI GTAC 1 cut(s) 207
AfeI AGCGCT 1 cut(s) 13
AfiI CCNNNNNNNGG 5 cut(s) 321, 447, 769, 1171, 1223
AgsI TTSAA 7 cut(s) 18, 251, 272, 280, 415, 640, 787
AjnI CCWGG 1 cut(s) 1150
AjuI GAANNNNNNNTTGG 2 cut(s) 1061, 1093
AloI GAACNNNNNNTCC 2 cut(s) 620, 652
AluBI AGCT 8 cut(s) 26, 463, 553, 747, 818, 883, 982, 1039
AluI AGCT 8 cut(s) 26, 463, 553, 747, 818, 883, 982, 1039
Alw21I GWGCWC 1 cut(s) 228
AlwI GGATC 5 cut(s) 293, 337, 1105, 1280, 1293
AlwNI CAGNNNCTG 1 cut(s) 1042
Aor13HI TCCGGA 1 cut(s) 730
Aor51HI AGCGCT 1 cut(s) 13
AoxI GGCC 2 cut(s) 790, 900
ApeKI GCWGC 4 cut(s) 744, 804, 979, 1039
ApoI RAATTY 1 cut(s) 275
ArsI GACNNNNNNTTYG 4 cut(s) 806, 838, 1211, 1243
Asp700I GAANNNNTTC 1 cut(s) 13
AspA2I CCTAGG 1 cut(s) 739
AspLEI GCGC 2 cut(s) 14, 397
AspS9I GGNCC 5 cut(s) 581, 682, 791, 938, 1091
AsuHPI GGTGA 4 cut(s) 283, 304, 640, 1036
AsuII TTCGAA 1 cut(s) 167
AsuNHI GCTAGC 2 cut(s) 397, 917
AvaII GGWCC 4 cut(s) 581, 682, 938, 1091
AvrII CCTAGG 1 cut(s) 739
BamHI GGATCC 1 cut(s) 1285
BanI GGYRCC 2 cut(s) 509, 1015
BbsI GAAGAC 2 cut(s) 816, 1148
Bbv12I GWGCWC 1 cut(s) 228
BbvI GCAGC 4 cut(s) 756, 816, 991, 1026
BccI CCATC 3 cut(s) 293, 413, 440
BceAI ACGGC 1 cut(s) 628
BcgI CGANNNNNNTGC 2 cut(s) 1041, 1075
BciT130I CCWGG 1 cut(s) 1152
BclI TGATCA 2 cut(s) 457, 1033
BfaI CTAG 7 cut(s) 99, 398, 602, 740, 884, 918, 965
BfmI CTRYAG 1 cut(s) 1246
BfoI RGCGCY 1 cut(s) 15
BisI GCNGC 4 cut(s) 745, 805, 980, 1040
BlnI CCTAGG 1 cut(s) 739
BlsI GCNGC 4 cut(s) 746, 806, 981, 1041
Bme1390I CCNGG 1 cut(s) 1152
Bme18I GGWCC 4 cut(s) 581, 682, 938, 1091
BmgT120I GGNCC 5 cut(s) 581, 682, 791, 938, 1091
BmiI GGNNCC 3 cut(s) 511, 1017, 1287
BmrFI CCNGG 1 cut(s) 1152
BmrI ACTGGG 1 cut(s) 257
BmsI GCATC 2 cut(s) 679, 904
BmtI GCTAGC 2 cut(s) 401, 921
BmuI ACTGGG 1 cut(s) 257
BpiI GAAGAC 2 cut(s) 816, 1148
BpmI CTGGAG 1 cut(s) 143
Bpu14I TTCGAA 1 cut(s) 167
BsaJI CCNNGG 1 cut(s) 739
BsaWI WCCGGW 2 cut(s) 578, 730
BsaXI ACNNNNNCTCC 2 cut(s) 560, 590
Bsc4I CCNNNNNNNGG 5 cut(s) 321, 447, 769, 1171, 1223
Bse118I RCCGGY 1 cut(s) 650
Bse1I ACTGG 5 cut(s) 147, 160, 263, 856, 940
Bse3DI GCAATG 2 cut(s) 69, 807
BseAI TCCGGA 1 cut(s) 730
BseBI CCWGG 1 cut(s) 1152
BseDI CCNNGG 1 cut(s) 739
BseGI GGATG 2 cut(s) 1080, 1201
BseLI CCNNNNNNNGG 5 cut(s) 321, 447, 769, 1171, 1223
BseMI GCAATG 2 cut(s) 69, 807
BseMII CTCAG 3 cut(s) 309, 680, 692
BseNI ACTGG 5 cut(s) 147, 160, 263, 856, 940
BseRI GAGGAG 1 cut(s) 752
BseXI GCAGC 4 cut(s) 756, 816, 991, 1026
BsgI GTGCAG 1 cut(s) 1206
Bsh1236I CGCG 1 cut(s) 395
Bsh1285I CGRYCG 1 cut(s) 179
BshFI GGCC 2 cut(s) 792, 902
BshNI GGYRCC 2 cut(s) 509, 1015
BsiEI CGRYCG 1 cut(s) 179
BsiHKAI GWGCWC 1 cut(s) 228
BsiSI CCGG 5 cut(s) 507, 579, 651, 731, 1019
BslI CCNNNNNNNGG 5 cut(s) 321, 447, 769, 1171, 1223
BsmI GAATGC 1 cut(s) 1146
BsnI GGCC 2 cut(s) 792, 902
Bsp119I TTCGAA 1 cut(s) 167
Bsp1286I GDGCHC 1 cut(s) 228
Bsp13I TCCGGA 1 cut(s) 730
Bsp143I GATC 8 cut(s) 298, 329, 457, 1026, 1033, 1110, 1169, 1285
BspACI CCGC 3 cut(s) 179, 594, 662
BspANI GGCC 2 cut(s) 792, 902
BspCNI CTCAG 3 cut(s) 308, 679, 691
BspEI TCCGGA 1 cut(s) 730
BspFNI CGCG 1 cut(s) 395
BspLI GGNNCC 3 cut(s) 511, 1017, 1287
BspMAI CTGCAG 1 cut(s) 1250
BspOI GCTAGC 2 cut(s) 401, 921
BspPI GGATC 5 cut(s) 293, 337, 1105, 1280, 1293
BspT104I TTCGAA 1 cut(s) 167
BspT107I GGYRCC 2 cut(s) 509, 1015
BsrDI GCAATG 2 cut(s) 69, 807
BsrFI RCCGGY 1 cut(s) 650
BsrI ACTGG 5 cut(s) 147, 160, 263, 856, 940
BssAI RCCGGY 1 cut(s) 650
BssECI CCNNGG 1 cut(s) 739
BssMI GATC 8 cut(s) 298, 329, 457, 1026, 1033, 1110, 1169, 1285
BssNAI GTATAC 1 cut(s) 259
BssT1I CCWWGG 1 cut(s) 739
Bst1107I GTATAC 1 cut(s) 259
Bst2UI CCWGG 1 cut(s) 1152
Bst4CI ACNGT 1 cut(s) 362
Bst6I CTCTTC 1 cut(s) 701
BstAPI GCANNNNNTGC 1 cut(s) 80
BstBI TTCGAA 1 cut(s) 167
BstC8I GCNNGC 2 cut(s) 399, 919
BstDEI CTNAG 4 cut(s) 295, 666, 678, 983
BstF5I GGATG 2 cut(s) 1080, 1201
BstFNI CGCG 1 cut(s) 395
BstH2I RGCGCY 1 cut(s) 15
BstHHI GCGC 2 cut(s) 14, 397
BstKTI GATC 8 cut(s) 301, 332, 460, 1029, 1036, 1113, 1172, 1288
BstMBI GATC 8 cut(s) 298, 329, 457, 1026, 1033, 1110, 1169, 1285
BstMCI CGRYCG 1 cut(s) 179
BstMWI GCNNNNNNNGC 3 cut(s) 80, 612, 880
BstNI CCWGG 1 cut(s) 1152
BstSCI CCNGG 1 cut(s) 1150
BstSFI CTRYAG 1 cut(s) 1246
BstUI CGCG 1 cut(s) 395
BstV1I GCAGC 4 cut(s) 756, 816, 991, 1026
BstV2I GAAGAC 2 cut(s) 816, 1148
BstX2I RGATCY 2 cut(s) 298, 1285
BstYI RGATCY 2 cut(s) 298, 1285
BstZ17I GTATAC 1 cut(s) 259
BsuRI GGCC 2 cut(s) 792, 902
BtsCI GGATG 2 cut(s) 1080, 1201
BtsIMutI CAGTG 2 cut(s) 167, 831
Cac8I GCNNGC 2 cut(s) 399, 919
CaiI CAGNNNCTG 1 cut(s) 1042
CfoI GCGC 2 cut(s) 14, 397
Cfr10I RCCGGY 1 cut(s) 650
Cfr13I GGNCC 5 cut(s) 581, 682, 791, 938, 1091
Csp6I GTAC 1 cut(s) 206
CviAII CATG 6 cut(s) 63, 485, 607, 718, 1085, 1207
CviQI GTAC 1 cut(s) 206
DdeI CTNAG 4 cut(s) 295, 666, 678, 983
DpnI GATC 8 cut(s) 300, 331, 459, 1028, 1035, 1112, 1171, 1287
DpnII GATC 8 cut(s) 298, 329, 457, 1026, 1033, 1110, 1169, 1285
DraI TTTAAA 1 cut(s) 894
Eam1104I CTCTTC 1 cut(s) 701
EarI CTCTTC 1 cut(s) 701
EciI GGCGGA 1 cut(s) 651
Eco130I CCWWGG 1 cut(s) 739
Eco47I GGWCC 4 cut(s) 581, 682, 938, 1091
Eco47III AGCGCT 1 cut(s) 13
Eco57I CTGAAG 1 cut(s) 855
EcoO109I RGGNCCY 1 cut(s) 682
EcoRII CCWGG 1 cut(s) 1150
EcoT14I CCWWGG 1 cut(s) 739
ErhI CCWWGG 1 cut(s) 739
FaeI CATG 6 cut(s) 66, 488, 610, 721, 1088, 1210
FalI AAGNNNNNCTT 3 cut(s) 30, 828, 860
FatI CATG 6 cut(s) 62, 484, 606, 717, 1084, 1206
FbaI TGATCA 2 cut(s) 457, 1033
FblI GTMKAC 2 cut(s) 154, 258
Fnu4HI GCNGC 4 cut(s) 745, 805, 980, 1040
FokI GGATG 2 cut(s) 1067, 1188
Fsp4HI GCNGC 4 cut(s) 745, 805, 980, 1040
FspBI CTAG 7 cut(s) 99, 398, 602, 740, 884, 918, 965
GlaI GCGC 2 cut(s) 13, 396
GluI GCNGC 4 cut(s) 745, 805, 980, 1040
GsuI CTGGAG 1 cut(s) 143
HaeII RGCGCY 1 cut(s) 15
HaeIII GGCC 2 cut(s) 792, 902
HapII CCGG 5 cut(s) 507, 579, 651, 731, 1019
HhaI GCGC 2 cut(s) 14, 397
Hin1II CATG 6 cut(s) 66, 488, 610, 721, 1088, 1210
Hin6I GCGC 2 cut(s) 12, 395
HinP1I GCGC 2 cut(s) 12, 395
HincII GTYRAC 2 cut(s) 861, 933
HindII GTYRAC 2 cut(s) 861, 933
HindIII AAGCTT 1 cut(s) 24
HinfI GANTC 1 cut(s) 1045
HpaI GTTAAC 2 cut(s) 861, 933
HpaII CCGG 5 cut(s) 507, 579, 651, 731, 1019
HphI GGTGA 4 cut(s) 283, 304, 640, 1036
Hpy166II GTNNAC 4 cut(s) 155, 259, 861, 933
Hpy188I TCNGA 4 cut(s) 298, 334, 669, 1218
Hpy188III TCNNGA 5 cut(s) 455, 680, 731, 965, 1114
Hpy8I GTNNAC 4 cut(s) 155, 259, 861, 933
HpyAV CCTTC 2 cut(s) 49, 737
HpyCH4III ACNGT 1 cut(s) 362
HpyF10VI GCNNNNNNNGC 3 cut(s) 80, 612, 880
HpyF3I CTNAG 4 cut(s) 295, 666, 678, 983
Hsp92II CATG 6 cut(s) 66, 488, 610, 721, 1088, 1210
HspAI GCGC 2 cut(s) 12, 395
Kpn2I TCCGGA 1 cut(s) 730
Ksp22I TGATCA 2 cut(s) 457, 1033
KspAI GTTAAC 2 cut(s) 861, 933
Kzo9I GATC 8 cut(s) 298, 329, 457, 1026, 1033, 1110, 1169, 1285
LmnI GCTCC 3 cut(s) 468, 752, 976
Lsp1109I GCAGC 4 cut(s) 756, 816, 991, 1026
LweI GCATC 2 cut(s) 679, 904
MaeI CTAG 7 cut(s) 99, 398, 602, 740, 884, 918, 965
MaeIII GTNAC 3 cut(s) 362, 942, 1132
MalI GATC 8 cut(s) 300, 331, 459, 1028, 1035, 1112, 1171, 1287
MboI GATC 8 cut(s) 298, 329, 457, 1026, 1033, 1110, 1169, 1285
MflI RGATCY 2 cut(s) 298, 1285
MhlI GDGCHC 1 cut(s) 228
MluCI AATT 4 cut(s) 275, 525, 640, 1072
MmeI TCCRAC 2 cut(s) 448, 519
MroI TCCGGA 1 cut(s) 730
MroXI GAANNNNTTC 1 cut(s) 13
MseI TTAA 5 cut(s) 35, 617, 860, 893, 932
MspA1I CMGCKG 1 cut(s) 1039
MspI CCGG 5 cut(s) 507, 579, 651, 731, 1019
MspR9I CCNGG 1 cut(s) 1152
Mva1269I GAATGC 1 cut(s) 1146
MvaI CCWGG 1 cut(s) 1152
MvnI CGCG 1 cut(s) 395
MwoI GCNNNNNNNGC 3 cut(s) 80, 612, 880
NdeII GATC 8 cut(s) 298, 329, 457, 1026, 1033, 1110, 1169, 1285
NheI GCTAGC 2 cut(s) 397, 917
NlaIII CATG 6 cut(s) 66, 488, 610, 721, 1088, 1210
NlaIV GGNNCC 3 cut(s) 511, 1017, 1287
NmuCI GTSAC 1 cut(s) 362
NspV TTCGAA 1 cut(s) 167
PctI GAATGC 1 cut(s) 1146
PdmI GAANNNNTTC 1 cut(s) 13
PfeI GAWTC 1 cut(s) 1045
PflMI CCANNNNNTGG 1 cut(s) 321
PkrI GCNGC 4 cut(s) 746, 806, 981, 1041
PpuMI RGGWCCY 1 cut(s) 682
Psp5II RGGWCCY 1 cut(s) 682
Psp6I CCWGG 1 cut(s) 1150
PspGI CCWGG 1 cut(s) 1150
PspN4I GGNNCC 3 cut(s) 511, 1017, 1287
PspPI GGNCC 5 cut(s) 581, 682, 791, 938, 1091
PspPPI RGGWCCY 1 cut(s) 682
PstI CTGCAG 1 cut(s) 1250
PstNI CAGNNNCTG 1 cut(s) 1042
PsuI RGATCY 2 cut(s) 298, 1285
PvuII CAGCTG 1 cut(s) 1039
RsaI GTAC 1 cut(s) 207
RsaNI GTAC 1 cut(s) 206
SaqAI TTAA 5 cut(s) 35, 617, 860, 893, 932
SatI GCNGC 4 cut(s) 745, 805, 980, 1040
Sau3AI GATC 8 cut(s) 298, 329, 457, 1026, 1033, 1110, 1169, 1285
Sau96I GGNCC 5 cut(s) 581, 682, 791, 938, 1091
ScrFI CCNGG 1 cut(s) 1152
SduI GDGCHC 1 cut(s) 228
SfaNI GCATC 2 cut(s) 679, 904
SfcI CTRYAG 1 cut(s) 1246
SfuI TTCGAA 1 cut(s) 167
SinI GGWCC 4 cut(s) 581, 682, 938, 1091
Sse9I AATT 4 cut(s) 275, 525, 640, 1072
SsiI CCGC 3 cut(s) 179, 594, 662
SspMI CTAG 7 cut(s) 99, 398, 602, 740, 884, 918, 965
StyD4I CCNGG 1 cut(s) 1150
StyI CCWWGG 1 cut(s) 739
TaaI ACNGT 1 cut(s) 362
TaqI TCGA 2 cut(s) 167, 408
TasI AATT 4 cut(s) 275, 525, 640, 1072
TfiI GAWTC 1 cut(s) 1045
Tru1I TTAA 5 cut(s) 35, 617, 860, 893, 932
Tru9I TTAA 5 cut(s) 35, 617, 860, 893, 932
TscAI CASTG 2 cut(s) 167, 838
TseFI GTSAC 1 cut(s) 362
TseI GCWGC 4 cut(s) 744, 804, 979, 1039
Tsp45I GTSAC 1 cut(s) 362
TspDTI ATGAA 4 cut(s) 623, 706, 1069, 1265
TspGWI ACGGA 1 cut(s) 930
TspRI CASTG 2 cut(s) 167, 838
Van91I CCANNNNNTGG 1 cut(s) 321
VpaK11BI GGWCC 4 cut(s) 581, 682, 938, 1091
XapI RAATTY 1 cut(s) 275
XbaI TCTAGA 1 cut(s) 964
XmaJI CCTAGG 1 cut(s) 739
XmiI GTMKAC 2 cut(s) 154, 258
XmnI GAANNNNTTC 1 cut(s) 13
XspI CTAG 7 cut(s) 99, 398, 602, 740, 884, 918, 965
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.