Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0013391.1

Orthogroup ID

OG0014884

Physical Location & Seq

Genomic Coordinates Forward (+)

2196 .. 2945

Gene Structure 750 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0013391.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 750 bp

atgggcggcaactgcagcaccgccgccggcgacgctcccgatccccgcccctccaacggccacgtccgaatcctccccccaaatgccgccccgacccgacccgcccccccgcccaaaccccacaccaccgccccaactaccagcaccaccggccgcgtcctcggcaagcccatggaggacgtccgctccacctacaccttcggccgcgagctcggccgcggccaattcggcgtcacctacctcgtgactcacaaagagaccaagcagcagttcgcctgcaaatccatcgctactcggaagctgatcaaccacgacgacgtggaggacgtccgccgtgaggtccagatcatgcaccacctcaccggccaccgcaacatcgtcgagctcaaaggcgcgtacgaggaccgccactcggtcaacctggtcatggagctctgcgccggcggcgagcttttcgataggatcatcgccaagggccactattcggagcgggcggcggcgaatctctgccgtcagatggtgaccgtcgtgcattactgtcactctatgggggtgtttcacagggacttgaagccggaaaatttcttgctgttgagtaaggatgaggactcgccgctcaaggccaccgatttcggactctccgtgttcttcaagcccggtgaggacctaacattcagttgttattatgcagaacaagttattgttttggtcattgcttgtgttttgtataagctgattatgttgagctga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004683 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005773 GO:0005829 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006970 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009628 GO:0009651 GO:0009719 GO:0009725 GO:0009737 GO:0009738 GO:0009755 GO:0009931 GO:0009987 GO:0010033 GO:0010119 GO:0010359 GO:0010857 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0018105 GO:0018193 GO:0018209 GO:0019538 GO:0022898 GO:0023052 GO:0032409 GO:0032412 GO:0032870 GO:0032879 GO:0033993 GO:0034762 GO:0034765 GO:0035556 GO:0036211 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043269 GO:0043412 GO:0044070 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0046777 GO:0050789 GO:0050794 GO:0050896 GO:0051049 GO:0051716 GO:0065007 GO:0065009 GO:0070887 GO:0071215 GO:0071229 GO:0071310 GO:0071396 GO:0071495 GO:0071704 GO:0071944 GO:0097305 GO:0097306 GO:0140096 GO:1901564 GO:1901700 GO:1901701 GO:1903959

KEGG Pathways

Metabolic & Signaling

ko04626 ko05145 map04626 map05145

Pfam Domains

Protein Families

EF-hand_1 EF-hand_5 EF-hand_6 Pkinase

Protein Analysis

249

Amino Acids

27.65

Weight (kDa)

8.15

Isoelectric Point (pI)

41.26

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014884)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G23650
fragaria_vesca	FvH4_5g03610 FvH4_5g03610 FvH4_5g03610
malus_domestica	MD06G1095900.v1.1 MD14G1116100.v1.1
prunus_persica	Prupe.5G110500_v2.0.a1
rosa_chinensis	RchiOBHm_Chr7g0196111
rosa_laevigata	RLG00000004064
rosa_multiflora	Rmu_sc0013391.1_g000002
rosa_roxburghii	Rroxscaffold_3G00259800
rosa_rugosa	Rorug07G0030700
rosa_samantha	Rh7AG156500 Rh7BG158100 Rh7CG162000
rosa_wichuraiana	Rw7G013370

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	2 cut(s)	183, 330
AccBSI	CCGCTC	3 cut(s)	186, 490, 616
AccII	CGCG	4 cut(s)	156, 207, 219, 395
AclWI	GGATC	2 cut(s)	35, 470
AcoI	YGGCCR	6 cut(s)	58, 151, 202, 214, 220, 364
AcsI	RAATTY	1 cut(s)	580
AcyI	GRCGYC	3 cut(s)	180, 231, 327
AfaI	GTAC	1 cut(s)	398
AfiI	CCNNNNNNNGG	6 cut(s)	56, 337, 412, 427, 484, 517
AgsI	TTSAA	2 cut(s)	571, 652
AjiI	CACGTC	2 cut(s)	64, 319
AjnI	CCWGG	1 cut(s)	420
AjuI	GAANNNNNNNTTGG	2 cut(s)	254, 286
AluBI	AGCT	7 cut(s)	211, 301, 385, 433, 451, 733, 747
AluI	AGCT	7 cut(s)	211, 301, 385, 433, 451, 733, 747
Alw21I	GWGCWC	3 cut(s)	213, 387, 435
Alw26I	GTCTC	1 cut(s)	251
AlwI	GGATC	2 cut(s)	35, 470
AoxI	GGCC	8 cut(s)	58, 151, 202, 214, 220, 364, 475, 621
ApeKI	GCWGC	2 cut(s)	15, 265
ApoI	RAATTY	1 cut(s)	580
AspLEI	GCGC	2 cut(s)	395, 440
AspS9I	GGNCC	4 cut(s)	340, 403, 475, 664
AsuC2I	CCSGG	1 cut(s)	657
AsuHPI	GGTGA	4 cut(s)	226, 352, 532, 671
AvaII	GGWCC	3 cut(s)	340, 403, 664
BanII	GRGCYC	3 cut(s)	213, 387, 435
BauI	CACGAG	1 cut(s)	242
Bbv12I	GWGCWC	3 cut(s)	213, 387, 435
BbvI	GCAGC	2 cut(s)	27, 277
BccI	CCATC	2 cut(s)	293, 511
BceAI	ACGGC	3 cut(s)	73, 318, 495
BcgI	CGANNNNNNTGC	4 cut(s)	268, 302, 361, 395
BciT130I	CCWGG	1 cut(s)	422
BclI	TGATCA	1 cut(s)	303
BcnI	CCSGG	1 cut(s)	657
BcoDI	GTCTC	1 cut(s)	251
BfmI	CTRYAG	1 cut(s)	13
BglI	GCCNNNNNGGC	1 cut(s)	228
Bme1390I	CCNGG	2 cut(s)	422, 657
Bme18I	GGWCC	3 cut(s)	340, 403, 664
BmgBI	CACGTC	2 cut(s)	64, 319
BmgT120I	GGNCC	4 cut(s)	340, 403, 475, 664
BmrFI	CCNGG	2 cut(s)	422, 657
BpuEI	CTTGAG	1 cut(s)	602
BpuMI	CCSGG	1 cut(s)	657
BsaHI	GRCGYC	3 cut(s)	180, 231, 327
BsaI	GGTCTC	1 cut(s)	251
BsaJI	CCNNGG	4 cut(s)	160, 171, 217, 471
BsaXI	ACNNNNNCTCC	2 cut(s)	170, 200
Bsc4I	CCNNNNNNNGG	6 cut(s)	56, 337, 412, 427, 484, 517
Bse118I	RCCGGY	4 cut(s)	26, 149, 362, 440
Bse3DI	GCAATG	1 cut(s)	711
BseBI	CCWGG	1 cut(s)	422
BseDI	CCNNGG	4 cut(s)	160, 171, 217, 471
BseGI	GGATG	1 cut(s)	607
BseLI	CCNNNNNNNGG	6 cut(s)	56, 337, 412, 427, 484, 517
BseMI	GCAATG	1 cut(s)	711
BseX3I	CGGCCG	3 cut(s)	151, 202, 214
BseXI	GCAGC	2 cut(s)	27, 277
Bsh1236I	CGCG	4 cut(s)	156, 207, 219, 395
Bsh1285I	CGRYCG	3 cut(s)	154, 205, 217
BshFI	GGCC	8 cut(s)	60, 153, 204, 216, 222, 366, 477, 623
BsiEI	CGRYCG	3 cut(s)	154, 205, 217
BsiHKAI	GWGCWC	3 cut(s)	213, 387, 435
BsiSI	CCGG	6 cut(s)	27, 150, 363, 441, 575, 657
BsiWI	CGTACG	1 cut(s)	396
BslFI	GGGAC	1 cut(s)	578
BslI	CCNNNNNNNGG	6 cut(s)	56, 337, 412, 427, 484, 517
BsmAI	GTCTC	1 cut(s)	251
BsmFI	GGGAC	1 cut(s)	578
BsnI	GGCC	8 cut(s)	60, 153, 204, 216, 222, 366, 477, 623
Bso31I	GGTCTC	1 cut(s)	251
Bsp1286I	GDGCHC	3 cut(s)	213, 387, 435
Bsp143I	GATC	4 cut(s)	40, 303, 345, 462
Bsp19I	CCATGG	1 cut(s)	171
BspANI	GGCC	8 cut(s)	60, 153, 204, 216, 222, 366, 477, 623
BspFNI	CGCG	4 cut(s)	156, 207, 219, 395
BspMAI	CTGCAG	1 cut(s)	17
BspPI	GGATC	2 cut(s)	35, 470
BspTNI	GGTCTC	1 cut(s)	251
BsrBI	CCGCTC	3 cut(s)	186, 490, 616
BsrDI	GCAATG	1 cut(s)	711
BsrFI	RCCGGY	4 cut(s)	26, 149, 362, 440
BssAI	RCCGGY	4 cut(s)	26, 149, 362, 440
BssECI	CCNNGG	4 cut(s)	160, 171, 217, 471
BssMI	GATC	4 cut(s)	40, 303, 345, 462
BssNI	GRCGYC	3 cut(s)	180, 231, 327
BssSI	CACGAG	1 cut(s)	242
BssT1I	CCWWGG	2 cut(s)	171, 471
Bst2BI	CACGAG	1 cut(s)	242
Bst2UI	CCWGG	1 cut(s)	422
Bst4CI	ACNGT	2 cut(s)	526, 539
BstACI	GRCGYC	3 cut(s)	180, 231, 327
BstC8I	GCNNGC	7 cut(s)	28, 167, 209, 277, 442, 449, 492
BstDSI	CCRYGG	2 cut(s)	171, 217
BstEII	GGTNACC	1 cut(s)	520
BstF5I	GGATG	1 cut(s)	607
BstFNI	CGCG	4 cut(s)	156, 207, 219, 395
BstHHI	GCGC	2 cut(s)	395, 440
BstKTI	GATC	4 cut(s)	43, 306, 348, 465
BstMAI	GTCTC	1 cut(s)	251
BstMBI	GATC	4 cut(s)	40, 303, 345, 462
BstMCI	CGRYCG	3 cut(s)	154, 205, 217
BstMWI	GCNNNNNNNGC	8 cut(s)	12, 15, 32, 150, 162, 213, 228, 444
BstNI	CCWGG	1 cut(s)	422
BstPI	GGTNACC	1 cut(s)	520
BstSCI	CCNGG	2 cut(s)	420, 655
BstSFI	CTRYAG	1 cut(s)	13
BstUI	CGCG	4 cut(s)	156, 207, 219, 395
BstV1I	GCAGC	2 cut(s)	27, 277
BstZI	CGGCCG	3 cut(s)	151, 202, 214
BsuRI	GGCC	8 cut(s)	60, 153, 204, 216, 222, 366, 477, 623
BtgI	CCRYGG	2 cut(s)	171, 217
BtgZI	GCGATG	2 cut(s)	271, 451
BtrI	CACGTC	2 cut(s)	64, 319
BtsCI	GGATG	1 cut(s)	607
Cac8I	GCNNGC	7 cut(s)	28, 167, 209, 277, 442, 449, 492
CfoI	GCGC	2 cut(s)	395, 440
Cfr10I	RCCGGY	4 cut(s)	26, 149, 362, 440
Cfr13I	GGNCC	4 cut(s)	340, 403, 475, 664
Cfr42I	CCGCGG	1 cut(s)	220
CseI	GACGC	3 cut(s)	41, 145, 220
CsiI	ACCWGGT	1 cut(s)	420
Csp6I	GTAC	1 cut(s)	397
CviAII	CATG	3 cut(s)	172, 349, 427
CviQI	GTAC	1 cut(s)	397
DpnI	GATC	4 cut(s)	42, 305, 347, 464
DpnII	GATC	4 cut(s)	40, 303, 345, 462
EaeI	YGGCCR	6 cut(s)	58, 151, 202, 214, 220, 364
EagI	CGGCCG	3 cut(s)	151, 202, 214
EciI	GGCGGA	1 cut(s)	320
Ecl136II	GAGCTC	3 cut(s)	211, 385, 433
EclXI	CGGCCG	3 cut(s)	151, 202, 214
Eco130I	CCWWGG	2 cut(s)	171, 471
Eco24I	GRGCYC	3 cut(s)	213, 387, 435
Eco31I	GGTCTC	1 cut(s)	251
Eco47I	GGWCC	3 cut(s)	340, 403, 664
Eco52I	CGGCCG	3 cut(s)	151, 202, 214
Eco53kI	GAGCTC	3 cut(s)	211, 385, 433
Eco91I	GGTNACC	1 cut(s)	520
EcoICRI	GAGCTC	3 cut(s)	211, 385, 433
EcoO109I	RGGNCCY	1 cut(s)	664
EcoO65I	GGTNACC	1 cut(s)	520
EcoRII	CCWGG	1 cut(s)	420
EcoT14I	CCWWGG	2 cut(s)	171, 471
EcoT38I	GRGCYC	3 cut(s)	213, 387, 435
ErhI	CCWWGG	2 cut(s)	171, 471
FaeI	CATG	3 cut(s)	175, 352, 430
FaiI	YATR	7 cut(s)	173, 350, 428, 548, 687, 729, 740
FaqI	GGGAC	1 cut(s)	578
FatI	CATG	3 cut(s)	171, 348, 426
FauI	CCCGC	4 cut(s)	53, 109, 117, 483
FbaI	TGATCA	1 cut(s)	303
FokI	GGATG	1 cut(s)	614
FriOI	GRGCYC	3 cut(s)	213, 387, 435
GlaI	GCGC	2 cut(s)	394, 439
HaeIII	GGCC	8 cut(s)	60, 153, 204, 216, 222, 366, 477, 623
HapII	CCGG	6 cut(s)	27, 150, 363, 441, 575, 657
HgaI	GACGC	3 cut(s)	41, 145, 220
HhaI	GCGC	2 cut(s)	395, 440
Hin1I	GRCGYC	3 cut(s)	180, 231, 327
Hin1II	CATG	3 cut(s)	175, 352, 430
Hin6I	GCGC	2 cut(s)	393, 438
HinP1I	GCGC	2 cut(s)	393, 438
HincII	GTYRAC	1 cut(s)	418
HindII	GTYRAC	1 cut(s)	418
HinfI	GANTC	5 cut(s)	69, 247, 502, 608, 636
HpaII	CCGG	6 cut(s)	27, 150, 363, 441, 575, 657
HphI	GGTGA	4 cut(s)	226, 352, 532, 671
Hpy166II	GTNNAC	1 cut(s)	418
Hpy188I	TCNGA	5 cut(s)	68, 297, 487, 516, 635
Hpy188III	TCNNGA	3 cut(s)	38, 244, 343
Hpy8I	GTNNAC	1 cut(s)	418
Hpy99I	CGWCG	5 cut(s)	35, 317, 320, 383, 530
HpyAV	CCTTC	1 cut(s)	208
HpyCH4III	ACNGT	2 cut(s)	526, 539
HpyCH4IV	ACGT	4 cut(s)	63, 180, 318, 327
HpyCH4V	TGCA	5 cut(s)	15, 279, 352, 532, 689
HpyF10VI	GCNNNNNNNGC	8 cut(s)	12, 15, 32, 150, 162, 213, 228, 444
HpySE526I	ACGT	4 cut(s)	63, 180, 318, 327
Hsp92I	GRCGYC	3 cut(s)	180, 231, 327
Hsp92II	CATG	3 cut(s)	175, 352, 430
HspAI	GCGC	2 cut(s)	393, 438
KroI	GCCGGC	2 cut(s)	26, 440
KroNI	GCCGGC	2 cut(s)	28, 442
Ksp22I	TGATCA	1 cut(s)	303
KspI	CCGCGG	1 cut(s)	220
Kzo9I	GATC	4 cut(s)	40, 303, 345, 462
LmnI	GCTCC	4 cut(s)	40, 191, 430, 487
Lsp1109I	GCAGC	2 cut(s)	27, 277
MabI	ACCWGGT	1 cut(s)	420
MaeII	ACGT	4 cut(s)	63, 180, 318, 327
MaeIII	GTNAC	4 cut(s)	232, 244, 520, 539
MalI	GATC	4 cut(s)	42, 305, 347, 464
MbiI	CCGCTC	3 cut(s)	186, 490, 616
MboI	GATC	4 cut(s)	40, 303, 345, 462
MboII	GAAGA	1 cut(s)	640
MhlI	GDGCHC	3 cut(s)	213, 387, 435
MluCI	AATT	2 cut(s)	224, 580
MlyI	GAGTC	3 cut(s)	241, 602, 630
MmeI	TCCRAC	1 cut(s)	78
MreI	CGCCGGCG	2 cut(s)	26, 440
MroNI	GCCGGC	2 cut(s)	26, 440
MspA1I	CMGCKG	1 cut(s)	219
MspI	CCGG	6 cut(s)	27, 150, 363, 441, 575, 657
MspR9I	CCNGG	2 cut(s)	422, 657
MvaI	CCWGG	1 cut(s)	422
MvnI	CGCG	4 cut(s)	156, 207, 219, 395
MwoI	GCNNNNNNNGC	8 cut(s)	12, 15, 32, 150, 162, 213, 228, 444
NaeI	GCCGGC	2 cut(s)	28, 442
NciI	CCSGG	1 cut(s)	657
NcoI	CCATGG	1 cut(s)	171
NdeII	GATC	4 cut(s)	40, 303, 345, 462
NgoMIV	GCCGGC	2 cut(s)	26, 440
NlaIII	CATG	3 cut(s)	175, 352, 430
NmeAIII	GCCGAG	2 cut(s)	141, 192
NmuCI	GTSAC	4 cut(s)	232, 244, 520, 539
PcsI	WCGNNNNNNNCGW	2 cut(s)	324, 639
PdiI	GCCGGC	2 cut(s)	28, 442
PfeI	GAWTC	2 cut(s)	69, 502
Pfl23II	CGTACG	1 cut(s)	396
PleI	GAGTC	3 cut(s)	241, 602, 630
PpsI	GAGTC	3 cut(s)	241, 602, 630
PpuMI	RGGWCCY	1 cut(s)	664
Psp124BI	GAGCTC	3 cut(s)	213, 387, 435
Psp5II	RGGWCCY	1 cut(s)	664
Psp6I	CCWGG	1 cut(s)	420
PspEI	GGTNACC	1 cut(s)	520
PspGI	CCWGG	1 cut(s)	420
PspLI	CGTACG	1 cut(s)	396
PspPI	GGNCC	4 cut(s)	340, 403, 475, 664
PspPPI	RGGWCCY	1 cut(s)	664
PstI	CTGCAG	1 cut(s)	17
RsaI	GTAC	1 cut(s)	398
RsaNI	GTAC	1 cut(s)	397
SacI	GAGCTC	3 cut(s)	213, 387, 435
SacII	CCGCGG	1 cut(s)	220
Sau3AI	GATC	4 cut(s)	40, 303, 345, 462
Sau96I	GGNCC	4 cut(s)	340, 403, 475, 664
SchI	GAGTC	3 cut(s)	241, 602, 630
ScrFI	CCNGG	2 cut(s)	422, 657
SduI	GDGCHC	3 cut(s)	213, 387, 435
SexAI	ACCWGGT	1 cut(s)	420
SfcI	CTRYAG	1 cut(s)	13
Sfr303I	CCGCGG	1 cut(s)	220
SgrAI	CRCCGGYG	2 cut(s)	26, 440
SgrBI	CCGCGG	1 cut(s)	220
SinI	GGWCC	3 cut(s)	340, 403, 664
SmlI	CTYRAG	1 cut(s)	617
SmoI	CTYRAG	1 cut(s)	617
Sse9I	AATT	2 cut(s)	224, 580
SstI	GAGCTC	3 cut(s)	213, 387, 435
StyD4I	CCNGG	2 cut(s)	420, 655
StyI	CCWWGG	2 cut(s)	171, 471
TaaI	ACNGT	2 cut(s)	526, 539
TaiI	ACGT	4 cut(s)	66, 183, 321, 330
TaqI	TCGA	2 cut(s)	381, 456
TaqII	GACCGA	1 cut(s)	403
TasI	AATT	2 cut(s)	224, 580
TfiI	GAWTC	2 cut(s)	69, 502
TseFI	GTSAC	4 cut(s)	232, 244, 520, 539
TseI	GCWGC	2 cut(s)	15, 265
Tsp45I	GTSAC	4 cut(s)	232, 244, 520, 539
TspGWI	ACGGA	1 cut(s)	631
VpaK11BI	GGWCC	3 cut(s)	340, 403, 664
XapI	RAATTY	1 cut(s)	580
ZraI	GACGTC	2 cut(s)	181, 328

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.