Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0014884

Physical Location & Seq

Genomic Coordinates Reverse (-)

54192033 .. 54196640

Gene Structure 4608 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00259800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1551 bp

ATGGGCGGCAACTGCAGCACCGCCGCCGGCGACGCTCCCCATCCCCGCCCCCACCGCCCCTCCAACGGCCACGTCCAAGTCCTCCCCCCAAATGCCGCCCCGACCCGACCCGCCCCGCCCAAACCCCACACCACCGCCCCAACCAACATCGGCCGCGTCCTCGGCAAGCCCATGGAGGACGTCCGCTCCACCTACACCTTCGGCCGCGAGCTCGGCCGCGGCCAATTCGGAGTCACCTACCTCGTGACTCACAAAGAGACCAAGCAGCAGTTCGCCTGCAAATCCATCGCGACTCGGAAGCTGATCAACCACGACGACGTGGAGGACGTCCGCCGTGAGGTCCAGATCATGCACCACCTCACCGGCCACCGCAACATCGTCGAGCTCAAAGGCGCGTACGAGGACCGCCACTCGGTCAACCTGGTCATGGAGCTCTGCGCCGGCGGCGAGCTTTTCGATAGGATCATCGCCAAGGGCCACTATTCGGAGCGGGCGGCGGCGAATCTCTGCCGTCAGATGGTGACCGTCGTGCATTACTGTCACTCTATGGGGGTGTTTCACAGGGACTTGAAGCCGGAGAATTTCTTGCTGTTGAGTAAGGATGAGGACTCGCCGCTCAAGGCCACCGATTTTGGACTCTCCGTGTTCTTCAAGCCCGGAGATGTATTCAAGGATCTTGTGGGAAGTGCTTACTATGTTGCCCCCGAAGTGCTGCGCAGGCGTTATGGAGCTGAGGCTGATATTTGGAGTGCTGGAGTGATACTATACATTCTACTTAGTGGGGTCCCACCATTCTGGGGAGAGAATGAACAGGGTATCTTTGATGCTATTCTTCGGGGTCACATTGATTTCTCATCTGATCCTTGGCCTTCCATATCCAGCAGTGCCAAAGATCTTGTGAAGAAAATGCTTCGAGCTGATCCAAAGGAACGGCTTGCAGCAGTGGATGTCCTTAATCATCCATGGATGCGAGAAGATGGCGATGCATCTGATAAACCTCTTGATATTGCTGTTTTATCTAGAATGAAGCAGTTCAGGGCAATGAACAAACTCAAGAAAGTTGCATTGAAGGTAATTGCAGAAAATCTTTCTGAAGAGGAAATCATAGGCTTGAAGGAAATGTTTAAATCAATGGACACAGATAACAGTGGAACAATTACATATGAAGAGTTAAAAGCGGGCCTTCCAAAGCTGGGTACCAAGCTTTCTGAGTCTGAAGTGAGACAGTTGATGGAAGCGGCTGATGTTGATGGAAATGGAACAATTGATTACATTGAGTTTATAACCGCTACTATGCACATGAACAGAATGGATAGAGAGGACCATTTATACACAGCCTTTGAATATTTCGACAAGGACAAGAGCGGGTACATCACGATGGAAGAATTGGAGCAAGCACTTAAGAAGTATAATATGGGTGATGAACAAACGATTAAGGAAATCATCGCAGAAGTTGACACAGACCTTGATGGAAGGATCAACTATGATGAGTTTGTTGCCATGATGAGGAAAGGAAATCCTGAGTTGGTCACAAACAGAAGAAGAAAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004683 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005773 GO:0005829 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006970 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009628 GO:0009651 GO:0009719 GO:0009725 GO:0009737 GO:0009738 GO:0009755 GO:0009931 GO:0009987 GO:0010033 GO:0010119 GO:0010359 GO:0010857 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0018105 GO:0018193 GO:0018209 GO:0019538 GO:0022898 GO:0023052 GO:0032409 GO:0032412 GO:0032870 GO:0032879 GO:0033993 GO:0034762 GO:0034765 GO:0035556 GO:0036211 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043269 GO:0043412 GO:0044070 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0046777 GO:0050789 GO:0050794 GO:0050896 GO:0051049 GO:0051716 GO:0065007 GO:0065009 GO:0070887 GO:0071215 GO:0071229 GO:0071310 GO:0071396 GO:0071495 GO:0071704 GO:0071944 GO:0097305 GO:0097306 GO:0140096 GO:1901564 GO:1901700 GO:1901701 GO:1903959

KEGG Pathways

Metabolic & Signaling

ko04626 ko05145 map04626 map05145

Pfam Domains

Protein Families

EF-hand_1 EF-hand_5 EF-hand_6 Pkinase

Protein Analysis

516

Amino Acids

58.14

Weight (kDa)

6.09

Isoelectric Point (pI)

37.5

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	65 - 323	1.5e-77	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	66 - 316	4.9e-29	Protein tyrosine and serine/threonine kinase
EF-hand_7	PF13499	371 - 431	8.9e-14	EF-hand domain pair
EF-hand_1	PF00036	371 - 397	1.4e-07	EF hand domain
EF-hand_6	PF13405	371 - 399	2.3e-06	EF-hand domain
EF-hand_8	PF13833	383 - 429	4.1e-06	EF-hand domain pair
EF-hand_7	PF13499	440 - 503	1.2e-16	EF-hand domain pair
EF-hand_6	PF13405	443 - 470	6.2e-07	EF-hand domain
EF-hand_1	PF00036	445 - 469	2.5e-06	EF hand domain
EF-hand_8	PF13833	455 - 504	5.5e-08	EF-hand domain pair
EF-hand_1	PF00036	478 - 504	3.5e-07	EF hand domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Orthologous Genes (Group: OG0014884)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G23650
fragaria_vesca	FvH4_5g03610 FvH4_5g03610 FvH4_5g03610
malus_domestica	MD06G1095900.v1.1 MD14G1116100.v1.1
prunus_persica	Prupe.5G110500_v2.0.a1
rosa_chinensis	RchiOBHm_Chr7g0196111
rosa_laevigata	RLG00000004064
rosa_multiflora	Rmu_sc0013391.1_g000002
rosa_roxburghii	Rroxscaffold_3G00259800
rosa_rugosa	Rorug07G0030700
rosa_samantha	Rh7AG156500 Rh7BG158100 Rh7CG162000
rosa_wichuraiana	Rw7G013370

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1283
AatII	GACGTC	2 cut(s)	183, 330
Acc16I	TGCGCA	1 cut(s)	716
Acc65I	GGTACC	1 cut(s)	1196
AccB1I	GGYRCC	1 cut(s)	1196
AccBSI	CCGCTC	4 cut(s)	186, 490, 616, 1365
AccII	CGCG	5 cut(s)	156, 207, 219, 290, 395
AclWI	GGATC	5 cut(s)	470, 681, 854, 914, 1484
AcoI	YGGCCR	6 cut(s)	67, 151, 202, 214, 220, 364
AcsI	RAATTY	1 cut(s)	580
AcuI	CTGAAG	2 cut(s)	1113, 1236
AcyI	GRCGYC	2 cut(s)	180, 327
AfaI	GTAC	3 cut(s)	398, 1198, 1370
AfiI	CCNNNNNNNGG	9 cut(s)	65, 337, 412, 427, 484, 517, 797, 1193, 1506
AflII	CTTAAG	1 cut(s)	1400
AgsI	TTSAA	6 cut(s)	571, 652, 670, 1069, 1114, 1343
AjiI	CACGTC	2 cut(s)	73, 319
AjnI	CCWGG	1 cut(s)	420
AjuI	GAANNNNNNNTTGG	2 cut(s)	254, 286
AluBI	AGCT	9 cut(s)	211, 301, 385, 433, 451, 731, 917, 1192, 1204
AluI	AGCT	9 cut(s)	211, 301, 385, 433, 451, 731, 917, 1192, 1204
Alw21I	GWGCWC	3 cut(s)	213, 387, 435
Alw26I	GTCTC	2 cut(s)	251, 1216
AlwI	GGATC	5 cut(s)	470, 681, 854, 914, 1484
ApeKI	GCWGC	4 cut(s)	15, 265, 712, 938
ApoI	RAATTY	1 cut(s)	580
Asp700I	GAANNNNTTC	1 cut(s)	1031
Asp718I	GGTACC	1 cut(s)	1196
AspLEI	GCGC	3 cut(s)	395, 440, 717
AspS9I	GGNCC	6 cut(s)	340, 403, 475, 784, 1180, 1321
AsuC2I	CCSGG	1 cut(s)	657
AsuHPI	GGTGA	4 cut(s)	226, 352, 532, 1430
AvaII	GGWCC	4 cut(s)	340, 403, 784, 1321
BanI	GGYRCC	1 cut(s)	1196
BanII	GRGCYC	3 cut(s)	213, 387, 435
BauI	CACGAG	1 cut(s)	242
Bbv12I	GWGCWC	3 cut(s)	213, 387, 435
BbvCI	CCTCAGC	1 cut(s)	732
BbvI	GCAGC	4 cut(s)	27, 277, 699, 950
BccI	CCATC	8 cut(s)	48, 293, 511, 971, 1225, 1244, 1372, 1463
BceAI	ACGGC	4 cut(s)	82, 318, 495, 947
BcgI	CGANNNNNNTGC	4 cut(s)	268, 302, 361, 395
BciT130I	CCWGG	1 cut(s)	422
BclI	TGATCA	1 cut(s)	303
BcnI	CCSGG	1 cut(s)	657
BcoDI	GTCTC	2 cut(s)	251, 1216
BfaI	CTAG	1 cut(s)	1020
BfmI	CTRYAG	1 cut(s)	13
BfrI	CTTAAG	1 cut(s)	1400
BglII	AGATCT	1 cut(s)	892
Bme1390I	CCNGG	2 cut(s)	422, 657
Bme18I	GGWCC	4 cut(s)	340, 403, 784, 1321
BmgBI	CACGTC	2 cut(s)	73, 319
BmgT120I	GGNCC	6 cut(s)	340, 403, 475, 784, 1180, 1321
BmiI	GGNNCC	3 cut(s)	785, 786, 1198
BmrFI	CCNGG	2 cut(s)	422, 657
BmsI	GCATC	4 cut(s)	814, 957, 973, 995
BpmI	CTGGAG	1 cut(s)	774
Bpu10I	CCTNAGC	1 cut(s)	732
BpuEI	CTTGAG	2 cut(s)	602, 1037
BpuMI	CCSGG	1 cut(s)	657
BsaHI	GRCGYC	2 cut(s)	180, 327
BsaI	GGTCTC	1 cut(s)	251
BsaJI	CCNNGG	6 cut(s)	160, 171, 217, 471, 863, 962
BsaXI	ACNNNNNCTCC	4 cut(s)	44, 74, 170, 200
Bsc4I	CCNNNNNNNGG	9 cut(s)	65, 337, 412, 427, 484, 517, 797, 1193, 1506
Bse118I	RCCGGY	3 cut(s)	26, 362, 440
Bse3DI	GCAATG	1 cut(s)	1047
BseBI	CCWGG	1 cut(s)	422
BseDI	CCNNGG	6 cut(s)	160, 171, 217, 471, 863, 962
BseGI	GGATG	5 cut(s)	40, 607, 952, 958, 972
BseLI	CCNNNNNNNGG	9 cut(s)	65, 337, 412, 427, 484, 517, 797, 1193, 1506
BseMI	GCAATG	1 cut(s)	1047
BseMII	CTCAG	3 cut(s)	723, 1200, 1512
BseX3I	CGGCCG	3 cut(s)	151, 202, 214
BseXI	GCAGC	4 cut(s)	27, 277, 699, 950
BseYI	CCCAGC	1 cut(s)	1192
Bsh1236I	CGCG	5 cut(s)	156, 207, 219, 290, 395
Bsh1285I	CGRYCG	3 cut(s)	154, 205, 217
BshNI	GGYRCC	1 cut(s)	1196
BsiEI	CGRYCG	3 cut(s)	154, 205, 217
BsiHKAI	GWGCWC	3 cut(s)	213, 387, 435
BsiSI	CCGG	5 cut(s)	27, 363, 441, 575, 657
BsiWI	CGTACG	1 cut(s)	396
BslFI	GGGAC	2 cut(s)	578, 770
BslI	CCNNNNNNNGG	9 cut(s)	65, 337, 412, 427, 484, 517, 797, 1193, 1506
BsmAI	GTCTC	2 cut(s)	251, 1216
BsmFI	GGGAC	2 cut(s)	578, 770
Bso31I	GGTCTC	1 cut(s)	251
Bsp1286I	GDGCHC	3 cut(s)	213, 387, 435
Bsp143I	GATC	8 cut(s)	303, 345, 462, 673, 859, 892, 919, 1476
Bsp19I	CCATGG	2 cut(s)	171, 962
Bsp68I	TCGCGA	1 cut(s)	290
BspCNI	CTCAG	3 cut(s)	724, 1201, 1513
BspFNI	CGCG	5 cut(s)	156, 207, 219, 290, 395
BspLI	GGNNCC	3 cut(s)	785, 786, 1198
BspMAI	CTGCAG	1 cut(s)	17
BspPI	GGATC	5 cut(s)	470, 681, 854, 914, 1484
BspT107I	GGYRCC	1 cut(s)	1196
BspTI	CTTAAG	1 cut(s)	1400
BspTNI	GGTCTC	1 cut(s)	251
BsrBI	CCGCTC	4 cut(s)	186, 490, 616, 1365
BsrDI	GCAATG	1 cut(s)	1047
BsrFI	RCCGGY	3 cut(s)	26, 362, 440
BssAI	RCCGGY	3 cut(s)	26, 362, 440
BssECI	CCNNGG	6 cut(s)	160, 171, 217, 471, 863, 962
BssMI	GATC	8 cut(s)	303, 345, 462, 673, 859, 892, 919, 1476
BssNI	GRCGYC	2 cut(s)	180, 327
BssSI	CACGAG	1 cut(s)	242
BssT1I	CCWWGG	4 cut(s)	171, 471, 863, 962
Bst2BI	CACGAG	1 cut(s)	242
Bst2UI	CCWGG	1 cut(s)	422
Bst4CI	ACNGT	4 cut(s)	526, 539, 1148, 1227
Bst6I	CTCTTC	2 cut(s)	1089, 1161
BstACI	GRCGYC	2 cut(s)	180, 327
BstAFI	CTTAAG	1 cut(s)	1400
BstDEI	CTNAG	4 cut(s)	732, 776, 1209, 1521
BstDSI	CCRYGG	3 cut(s)	171, 217, 962
BstEII	GGTNACC	1 cut(s)	520
BstF5I	GGATG	5 cut(s)	40, 607, 952, 958, 972
BstFNI	CGCG	5 cut(s)	156, 207, 219, 290, 395
BstHHI	GCGC	3 cut(s)	395, 440, 717
BstKTI	GATC	8 cut(s)	306, 348, 465, 676, 862, 895, 922, 1479
BstMAI	GTCTC	2 cut(s)	251, 1216
BstMBI	GATC	8 cut(s)	303, 345, 462, 673, 859, 892, 919, 1476
BstMCI	CGRYCG	3 cut(s)	154, 205, 217
BstMWI	GCNNNNNNNGC	8 cut(s)	12, 15, 32, 54, 162, 213, 444, 718
BstNI	CCWGG	1 cut(s)	422
BstPI	GGTNACC	1 cut(s)	520
BstSCI	CCNGG	2 cut(s)	420, 655
BstSFI	CTRYAG	1 cut(s)	13
BstUI	CGCG	5 cut(s)	156, 207, 219, 290, 395
BstV1I	GCAGC	4 cut(s)	27, 277, 699, 950
BstX2I	RGATCY	2 cut(s)	673, 892
BstXI	CCANNNNNNTGG	1 cut(s)	795
BstYI	RGATCY	2 cut(s)	673, 892
BstZI	CGGCCG	3 cut(s)	151, 202, 214
BtgI	CCRYGG	3 cut(s)	171, 217, 962
BtgZI	GCGATG	4 cut(s)	271, 451, 996, 1429
BtrI	CACGTC	2 cut(s)	73, 319
BtsCI	GGATG	5 cut(s)	40, 607, 952, 958, 972
BtsI	GCAGTG	2 cut(s)	889, 948
BtsIMutI	CAGTG	3 cut(s)	889, 948, 1153
BtuMI	TCGCGA	1 cut(s)	290
CfoI	GCGC	3 cut(s)	395, 440, 717
Cfr10I	RCCGGY	3 cut(s)	26, 362, 440
Cfr13I	GGNCC	6 cut(s)	340, 403, 475, 784, 1180, 1321
Cfr42I	CCGCGG	1 cut(s)	220
CseI	GACGC	2 cut(s)	41, 145
CsiI	ACCWGGT	1 cut(s)	420
Csp6I	GTAC	3 cut(s)	397, 1197, 1369
CspCI	CAANNNNNGTGG	2 cut(s)	613, 648
CviAII	CATG	6 cut(s)	172, 349, 427, 963, 1300, 1501
CviQI	GTAC	3 cut(s)	397, 1197, 1369
DdeI	CTNAG	4 cut(s)	732, 776, 1209, 1521
DpnI	GATC	8 cut(s)	305, 347, 464, 675, 861, 894, 921, 1478
DpnII	GATC	8 cut(s)	303, 345, 462, 673, 859, 892, 919, 1476
DraI	TTTAAA	1 cut(s)	1126
EaeI	YGGCCR	6 cut(s)	67, 151, 202, 214, 220, 364
EagI	CGGCCG	3 cut(s)	151, 202, 214
Eam1104I	CTCTTC	2 cut(s)	1089, 1161
EarI	CTCTTC	2 cut(s)	1089, 1161
EciI	GGCGGA	1 cut(s)	320
Ecl136II	GAGCTC	3 cut(s)	211, 385, 433
EclXI	CGGCCG	3 cut(s)	151, 202, 214
Eco130I	CCWWGG	4 cut(s)	171, 471, 863, 962
Eco24I	GRGCYC	3 cut(s)	213, 387, 435
Eco31I	GGTCTC	1 cut(s)	251
Eco47I	GGWCC	4 cut(s)	340, 403, 784, 1321
Eco52I	CGGCCG	3 cut(s)	151, 202, 214
Eco53kI	GAGCTC	3 cut(s)	211, 385, 433
Eco57I	CTGAAG	2 cut(s)	1113, 1236
Eco91I	GGTNACC	1 cut(s)	520
EcoICRI	GAGCTC	3 cut(s)	211, 385, 433
EcoO109I	RGGNCCY	1 cut(s)	784
EcoO65I	GGTNACC	1 cut(s)	520
EcoRII	CCWGG	1 cut(s)	420
EcoT14I	CCWWGG	4 cut(s)	171, 471, 863, 962
EcoT22I	ATGCAT	1 cut(s)	988
EcoT38I	GRGCYC	3 cut(s)	213, 387, 435
ErhI	CCWWGG	4 cut(s)	171, 471, 863, 962
FaeI	CATG	6 cut(s)	175, 352, 430, 966, 1303, 1504
FalI	AAGNNNNNCTT	2 cut(s)	1167, 1199
FaqI	GGGAC	2 cut(s)	578, 770
FatI	CATG	6 cut(s)	171, 348, 426, 962, 1299, 1500
FauI	CCCGC	6 cut(s)	53, 118, 123, 483, 1171, 1358
FauNDI	CATATG	1 cut(s)	1162
FbaI	TGATCA	1 cut(s)	303
FokI	GGATG	5 cut(s)	27, 614, 945, 959, 979
FriOI	GRGCYC	3 cut(s)	213, 387, 435
FspBI	CTAG	1 cut(s)	1020
FspI	TGCGCA	1 cut(s)	716
GlaI	GCGC	3 cut(s)	394, 439, 716
GsaI	CCCAGC	1 cut(s)	1196
GsuI	CTGGAG	1 cut(s)	774
HapII	CCGG	5 cut(s)	27, 363, 441, 575, 657
HgaI	GACGC	2 cut(s)	41, 145
HhaI	GCGC	3 cut(s)	395, 440, 717
Hin1I	GRCGYC	2 cut(s)	180, 327
Hin1II	CATG	6 cut(s)	175, 352, 430, 966, 1303, 1504
Hin6I	GCGC	3 cut(s)	393, 438, 715
HinP1I	GCGC	3 cut(s)	393, 438, 715
HincII	GTYRAC	2 cut(s)	418, 1456
HindII	GTYRAC	2 cut(s)	418, 1456
HindIII	AAGCTT	1 cut(s)	1202
HinfI	GANTC	7 cut(s)	231, 247, 292, 502, 608, 636, 1211
HpaII	CCGG	5 cut(s)	27, 363, 441, 575, 657
HphI	GGTGA	4 cut(s)	226, 352, 532, 1430
Hpy166II	GTNNAC	2 cut(s)	418, 1456
Hpy188I	TCNGA	9 cut(s)	230, 297, 487, 516, 859, 991, 1093, 1210, 1216
Hpy188III	TCNNGA	8 cut(s)	244, 289, 343, 1001, 1020, 1054, 1375, 1520
Hpy8I	GTNNAC	2 cut(s)	418, 1456
Hpy99I	CGWCG	5 cut(s)	35, 317, 320, 383, 530
HpyAV	CCTTC	6 cut(s)	208, 879, 1063, 1108, 1193, 1467
HpyCH4III	ACNGT	4 cut(s)	526, 539, 1148, 1227
HpyCH4IV	ACGT	4 cut(s)	72, 180, 318, 327
HpyCH4V	TGCA	9 cut(s)	15, 279, 352, 532, 938, 986, 1064, 1079, 1297
HpyF10VI	GCNNNNNNNGC	8 cut(s)	12, 15, 32, 54, 162, 213, 444, 718
HpyF3I	CTNAG	4 cut(s)	732, 776, 1209, 1521
HpySE526I	ACGT	4 cut(s)	72, 180, 318, 327
Hsp92I	GRCGYC	2 cut(s)	180, 327
Hsp92II	CATG	6 cut(s)	175, 352, 430, 966, 1303, 1504
HspAI	GCGC	3 cut(s)	393, 438, 715
KflI	GGGWCCC	1 cut(s)	784
KpnI	GGTACC	1 cut(s)	1200
KroI	GCCGGC	2 cut(s)	26, 440
KroNI	GCCGGC	2 cut(s)	28, 442
Ksp22I	TGATCA	1 cut(s)	303
KspI	CCGCGG	1 cut(s)	220
Kzo9I	GATC	8 cut(s)	303, 345, 462, 673, 859, 892, 919, 1476
LmnI	GCTCC	6 cut(s)	40, 191, 430, 487, 728, 1390
Lsp1109I	GCAGC	4 cut(s)	27, 277, 699, 950
LweI	GCATC	4 cut(s)	814, 957, 973, 995
MabI	ACCWGGT	1 cut(s)	420
MaeI	CTAG	1 cut(s)	1020
MaeII	ACGT	4 cut(s)	72, 180, 318, 327
MaeIII	GTNAC	6 cut(s)	232, 244, 520, 539, 839, 1528
MalI	GATC	8 cut(s)	305, 347, 464, 675, 861, 894, 921, 1478
MbiI	CCGCTC	4 cut(s)	186, 490, 616, 1365
MboI	GATC	8 cut(s)	303, 345, 462, 673, 859, 892, 919, 1476
MboII	GAAGA	8 cut(s)	640, 824, 913, 986, 1106, 1178, 1394, 1551
MfeI	CAATTG	1 cut(s)	1263
MflI	RGATCY	2 cut(s)	673, 892
MhlI	GDGCHC	3 cut(s)	213, 387, 435
MluCI	AATT	6 cut(s)	224, 580, 1074, 1155, 1263, 1385
MlyI	GAGTC	6 cut(s)	240, 241, 286, 602, 630, 1220
MmeI	TCCRAC	1 cut(s)	87
Mph1103I	ATGCAT	1 cut(s)	988
MreI	CGCCGGCG	2 cut(s)	26, 440
MroNI	GCCGGC	2 cut(s)	26, 440
MroXI	GAANNNNTTC	1 cut(s)	1031
MseI	TTAA	5 cut(s)	954, 1125, 1172, 1401, 1434
MslI	CAYNNNNRTG	1 cut(s)	1376
MspA1I	CMGCKG	1 cut(s)	219
MspCI	CTTAAG	1 cut(s)	1400
MspI	CCGG	5 cut(s)	27, 363, 441, 575, 657
MspR9I	CCNGG	2 cut(s)	422, 657
MunI	CAATTG	1 cut(s)	1263
MvaI	CCWGG	1 cut(s)	422
MvnI	CGCG	5 cut(s)	156, 207, 219, 290, 395
MwoI	GCNNNNNNNGC	8 cut(s)	12, 15, 32, 54, 162, 213, 444, 718
NaeI	GCCGGC	2 cut(s)	28, 442
NciI	CCSGG	1 cut(s)	657
NcoI	CCATGG	2 cut(s)	171, 962
NdeI	CATATG	1 cut(s)	1162
NdeII	GATC	8 cut(s)	303, 345, 462, 673, 859, 892, 919, 1476
NgoMIV	GCCGGC	2 cut(s)	26, 440
NlaIII	CATG	6 cut(s)	175, 352, 430, 966, 1303, 1504
NlaIV	GGNNCC	3 cut(s)	785, 786, 1198
NmeAIII	GCCGAG	2 cut(s)	141, 192
NmuCI	GTSAC	6 cut(s)	232, 244, 520, 539, 839, 1528
NruI	TCGCGA	1 cut(s)	290
NsbI	TGCGCA	1 cut(s)	716
NsiI	ATGCAT	1 cut(s)	988
PcsI	WCGNNNNNNNCGW	1 cut(s)	324
PdiI	GCCGGC	2 cut(s)	28, 442
PdmI	GAANNNNTTC	1 cut(s)	1031
PfeI	GAWTC	1 cut(s)	502
Pfl23II	CGTACG	1 cut(s)	396
PleI	GAGTC	6 cut(s)	239, 241, 286, 602, 630, 1219
PpsI	GAGTC	6 cut(s)	239, 241, 286, 602, 630, 1219
PpuMI	RGGWCCY	1 cut(s)	784
PsiI	TTATAA	1 cut(s)	1283
Psp124BI	GAGCTC	3 cut(s)	213, 387, 435
Psp5II	RGGWCCY	1 cut(s)	784
Psp6I	CCWGG	1 cut(s)	420
PspEI	GGTNACC	1 cut(s)	520
PspFI	CCCAGC	1 cut(s)	1192
PspGI	CCWGG	1 cut(s)	420
PspLI	CGTACG	1 cut(s)	396
PspN4I	GGNNCC	3 cut(s)	785, 786, 1198
PspPI	GGNCC	6 cut(s)	340, 403, 475, 784, 1180, 1321
PspPPI	RGGWCCY	1 cut(s)	784
PstI	CTGCAG	1 cut(s)	17
PsuI	RGATCY	2 cut(s)	673, 892
RruI	TCGCGA	1 cut(s)	290
RsaI	GTAC	3 cut(s)	398, 1198, 1370
RsaNI	GTAC	3 cut(s)	397, 1197, 1369
RseI	CAYNNNNRTG	1 cut(s)	1376
SacI	GAGCTC	3 cut(s)	213, 387, 435
SacII	CCGCGG	1 cut(s)	220
SaqAI	TTAA	5 cut(s)	954, 1125, 1172, 1401, 1434
Sau3AI	GATC	8 cut(s)	303, 345, 462, 673, 859, 892, 919, 1476
Sau96I	GGNCC	6 cut(s)	340, 403, 475, 784, 1180, 1321
SchI	GAGTC	6 cut(s)	240, 241, 286, 602, 630, 1220
ScrFI	CCNGG	2 cut(s)	422, 657
SduI	GDGCHC	3 cut(s)	213, 387, 435
SexAI	ACCWGGT	1 cut(s)	420
SfaNI	GCATC	4 cut(s)	814, 957, 973, 995
SfcI	CTRYAG	1 cut(s)	13
Sfr303I	CCGCGG	1 cut(s)	220
SgrAI	CRCCGGYG	2 cut(s)	26, 440
SgrBI	CCGCGG	1 cut(s)	220
SinI	GGWCC	4 cut(s)	340, 403, 784, 1321
SmiMI	CAYNNNNRTG	1 cut(s)	1376
SmlI	CTYRAG	3 cut(s)	617, 1052, 1400
SmoI	CTYRAG	3 cut(s)	617, 1052, 1400
Sse9I	AATT	6 cut(s)	224, 580, 1074, 1155, 1263, 1385
SspI	AATATT	1 cut(s)	1346
SspMI	CTAG	1 cut(s)	1020
SstI	GAGCTC	3 cut(s)	213, 387, 435
StyD4I	CCNGG	2 cut(s)	420, 655
StyI	CCWWGG	4 cut(s)	171, 471, 863, 962
TaaI	ACNGT	4 cut(s)	526, 539, 1148, 1227
TaiI	ACGT	4 cut(s)	75, 183, 321, 330
TaqI	TCGA	4 cut(s)	381, 456, 913, 1350
TaqII	GACCGA	1 cut(s)	403
TasI	AATT	6 cut(s)	224, 580, 1074, 1155, 1263, 1385
TfiI	GAWTC	1 cut(s)	502
Tru1I	TTAA	5 cut(s)	954, 1125, 1172, 1401, 1434
Tru9I	TTAA	5 cut(s)	954, 1125, 1172, 1401, 1434
TscAI	CASTG	3 cut(s)	889, 948, 1153
TseFI	GTSAC	6 cut(s)	232, 244, 520, 539, 839, 1528
TseI	GCWGC	4 cut(s)	15, 265, 712, 938
Tsp45I	GTSAC	6 cut(s)	232, 244, 520, 539, 839, 1528
TspDTI	ATGAA	6 cut(s)	822, 1040, 1058, 1179, 1316, 1437
TspGWI	ACGGA	1 cut(s)	631
TspRI	CASTG	3 cut(s)	889, 948, 1153
Vha464I	CTTAAG	1 cut(s)	1400
VpaK11BI	GGWCC	4 cut(s)	340, 403, 784, 1321
XapI	RAATTY	1 cut(s)	580
XbaI	TCTAGA	1 cut(s)	1019
XmnI	GAANNNNTTC	1 cut(s)	1031
XspI	CTAG	1 cut(s)	1020
ZraI	GACGTC	2 cut(s)	181, 328
Zsp2I	ATGCAT	1 cut(s)	988

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.