Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000007

Orthogroup ID

OG0014884

Physical Location & Seq

Genomic Coordinates Reverse (-)

2120660 .. 2122936

Gene Structure 2277 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug07G0030700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1107 bp

ATGGGGAGACCTCCTGCTTGTTGTGACAAACTGATCAATGTGAAGAAGGGCACTTGGACTGAAGAGGAAGATGCAAATATACTTGCTCATCATGTATCCAAGAATGGGATCGGTAACTGGACTTCTGTTCCGAAAAAAGCAGGACTTAATAGATGTGGGAAGAGTTGCAAGCCTAGGTGGAGTAATTACTTGAGGGCTAATCTGAAGCATGAAACCTTCACACCCCAAGAGGAAGAATTGATTGTTAGGCTTCATGCAACCATTGGTAGCAGGTGGCCTATAATAGCTCAACAACTTCCTGGGAGGACAGACAATGATGTGAAGACCTACTGGAACACTAAGCTGAAAAAGAAGCTCTCAGATATGGGAATTGATCCCGTTACTCACAAGCCCTTCTCTCAAATTTTAGCCGACTATGGAAACATTGGTGGCCTACCCAAATCTGGAATGCGAATCGGGATAGGTGCTTCCCTAAACAAGGACTTGAAGAATGCTATGCTGATGAAGTCATCAGAACCATACACATCAGGCTTGTCAAACTTCAACAACAGCCATTCGGTGCCAACAACCAAAATCGAACCAATGCAAGCCACTAGCAGCACCAAATTCGACTACTACCAACCCTATGATCTTCTCACACAGCTGCAAGCCATGAAATATGTGACAGAGGTCTCAAACTCCACCACCAACACCAACCCTGCTCCTTCCCCTGTCAATTTCTACAGTGAAGGCTCATTATCTTCTTCATCCTCGTCTACTTCTTCATCTGCTGCTGTGCAAGAGAAGTCACCTCTGGCCTTTGGATGGAGTGATTTTCTCCTAGAAGACGCATTTGTGCCAACTGAAGATGCTCGCGGAGCAATGCCACAAGGCGAAATTTGGGACCAAGCTACTATGCAAGATAATATGGCCGAGTCTTCATCCAAAGACATGTTTAACCAAGCACAAACAGAAAATGTGGGCATGAGTTATGGAATGTCAAGCAATCAAGTAGAGGCTATAGCTGATCCATGCGACAGTTCATTTGTGGAAGCCATGGTAGCTAAAGAGAATGACTTGTTCTTGGAGTTTCCTGAACTACTTCTGGAAGAACCATTCTACTACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004683 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005773 GO:0005829 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006970 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009628 GO:0009651 GO:0009719 GO:0009725 GO:0009737 GO:0009738 GO:0009755 GO:0009931 GO:0009987 GO:0010033 GO:0010119 GO:0010359 GO:0010857 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0018105 GO:0018193 GO:0018209 GO:0019538 GO:0022898 GO:0023052 GO:0032409 GO:0032412 GO:0032870 GO:0032879 GO:0033993 GO:0034762 GO:0034765 GO:0035556 GO:0036211 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043269 GO:0043412 GO:0044070 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0046777 GO:0050789 GO:0050794 GO:0050896 GO:0051049 GO:0051716 GO:0065007 GO:0065009 GO:0070887 GO:0071215 GO:0071229 GO:0071310 GO:0071396 GO:0071495 GO:0071704 GO:0071944 GO:0097305 GO:0097306 GO:0140096 GO:1901564 GO:1901700 GO:1901701 GO:1903959

KEGG Pathways

Metabolic & Signaling

ko04626 ko05145 map04626 map05145

Pfam Domains

Protein Families

EF-hand_1 EF-hand_5 EF-hand_6 Pkinase

Protein Analysis

368

Amino Acids

40.71

Weight (kDa)

5.29

Isoelectric Point (pI)

53.16

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Myb_DNA-binding	PF00249	16 - 64	1.9e-12	Myb-like DNA-binding domain
Myb_DNA-bind_6	PF13921	19 - 79	2.3e-08	Myb-like DNA-binding domain
Myb_DNA-binding	PF00249	72 - 113	3.2e-13	Myb-like DNA-binding domain
Myb_DNA-bind_6	PF13921	73 - 120	2e-07	Myb-like DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014884)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G23650
fragaria_vesca	FvH4_5g03610 FvH4_5g03610 FvH4_5g03610
malus_domestica	MD06G1095900.v1.1 MD14G1116100.v1.1
prunus_persica	Prupe.5G110500_v2.0.a1
rosa_chinensis	RchiOBHm_Chr7g0196111
rosa_laevigata	RLG00000004064
rosa_multiflora	Rmu_sc0013391.1_g000002
rosa_roxburghii	Rroxscaffold_3G00259800
rosa_rugosa	Rorug07G0030700
rosa_samantha	Rh7AG156500 Rh7BG158100 Rh7CG162000
rosa_wichuraiana	Rw7G013370

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	261
Acc36I	ACCTGC	1 cut(s)	261
AccB1I	GGYRCC	1 cut(s)	559
AccI	GTMKAC	1 cut(s)	755
AccII	CGCG	1 cut(s)	855
AciI	CCGC	1 cut(s)	855
AclWI	GGATC	3 cut(s)	116, 368, 1001
AcoI	YGGCCR	1 cut(s)	909
AcsI	RAATTY	3 cut(s)	402, 605, 876
AcuI	CTGAAG	3 cut(s)	81, 224, 864
AfiI	CCNNNNNNNGG	4 cut(s)	105, 443, 478, 804
AflIII	ACRYGT	1 cut(s)	930
AgsI	TTSAA	2 cut(s)	487, 544
AjnI	CCWGG	1 cut(s)	298
AluBI	AGCT	7 cut(s)	287, 343, 355, 643, 890, 1004, 1043
AluI	AGCT	7 cut(s)	287, 343, 355, 643, 890, 1004, 1043
Alw26I	GTCTC	1 cut(s)	676
AlwI	GGATC	3 cut(s)	116, 368, 1001
AoxI	GGCC	4 cut(s)	275, 430, 795, 909
ApeKI	GCWGC	3 cut(s)	597, 643, 770
ApoI	RAATTY	3 cut(s)	402, 605, 876
ArsI	GACNNNNNNTTYG	2 cut(s)	1007, 1039
Asp700I	GAANNNNTTC	1 cut(s)	1080
AspA2I	CCTAGG	1 cut(s)	173
AspS9I	GGNCC	1 cut(s)	883
AsuHPI	GGTGA	1 cut(s)	780
AvaII	GGWCC	1 cut(s)	883
AvrII	CCTAGG	1 cut(s)	173
BaeGI	GKGCMC	1 cut(s)	53
BanI	GGYRCC	1 cut(s)	559
BarI	GAAGNNNNNNTAC	2 cut(s)	106, 138
BbsI	GAAGAC	3 cut(s)	329, 831, 909
BbvI	GCAGC	3 cut(s)	609, 630, 757
BccI	CCATC	1 cut(s)	798
BcgI	CGANNNNNNTGC	2 cut(s)	589, 623
BciT130I	CCWGG	1 cut(s)	300
BciVI	GTATCC	1 cut(s)	106
BclI	TGATCA	1 cut(s)	33
BcoDI	GTCTC	1 cut(s)	676
BfaI	CTAG	3 cut(s)	174, 594, 821
BfmI	CTRYAG	2 cut(s)	721, 999
BfuAI	ACCTGC	1 cut(s)	261
BfuI	GTATCC	1 cut(s)	106
BisI	GCNGC	3 cut(s)	598, 644, 771
BlnI	CCTAGG	1 cut(s)	173
BlsI	GCNGC	3 cut(s)	599, 645, 772
Bme1390I	CCNGG	1 cut(s)	300
Bme18I	GGWCC	1 cut(s)	883
BmgT120I	GGNCC	1 cut(s)	883
BmiI	GGNNCC	2 cut(s)	561, 884
BmrFI	CCNGG	1 cut(s)	300
BmsI	GCATC	2 cut(s)	61, 838
BoxI	GACNNNNGTC	1 cut(s)	668
BpiI	GAAGAC	3 cut(s)	329, 831, 909
BpuEI	CTTGAG	1 cut(s)	211
BsaI	GGTCTC	1 cut(s)	676
BsaJI	CCNNGG	3 cut(s)	173, 299, 1035
Bsc4I	CCNNNNNNNGG	4 cut(s)	105, 443, 478, 804
Bse1I	ACTGG	2 cut(s)	122, 335
Bse3DI	GCAATG	1 cut(s)	867
BseBI	CCWGG	1 cut(s)	300
BseDI	CCNNGG	3 cut(s)	173, 299, 1035
BseGI	GGATG	3 cut(s)	746, 809, 920
BseLI	CCNNNNNNNGG	4 cut(s)	105, 443, 478, 804
BseMI	GCAATG	1 cut(s)	867
BseMII	CTCAG	1 cut(s)	372
BseNI	ACTGG	2 cut(s)	122, 335
BseSI	GKGCMC	1 cut(s)	53
BseXI	GCAGC	3 cut(s)	609, 630, 757
Bsh1236I	CGCG	1 cut(s)	855
BshFI	GGCC	4 cut(s)	277, 432, 797, 911
BshNI	GGYRCC	1 cut(s)	559
BslFI	GGGAC	1 cut(s)	896
BslI	CCNNNNNNNGG	4 cut(s)	105, 443, 478, 804
BsmAI	GTCTC	1 cut(s)	676
BsmFI	GGGAC	1 cut(s)	896
BsmI	GAATGC	2 cut(s)	453, 496
BsnI	GGCC	4 cut(s)	277, 432, 797, 911
Bso31I	GGTCTC	1 cut(s)	676
Bsp1286I	GDGCHC	1 cut(s)	53
Bsp143I	GATC	5 cut(s)	33, 108, 373, 628, 1006
Bsp19I	CCATGG	1 cut(s)	1035
BspACI	CCGC	1 cut(s)	855
BspANI	GGCC	4 cut(s)	277, 432, 797, 911
BspCNI	CTCAG	1 cut(s)	371
BspFNI	CGCG	1 cut(s)	855
BspLI	GGNNCC	2 cut(s)	561, 884
BspMI	ACCTGC	1 cut(s)	261
BspPI	GGATC	3 cut(s)	116, 368, 1001
BspT107I	GGYRCC	1 cut(s)	559
BspTNI	GGTCTC	1 cut(s)	676
BsrDI	GCAATG	1 cut(s)	867
BsrI	ACTGG	2 cut(s)	122, 335
BssECI	CCNNGG	3 cut(s)	173, 299, 1035
BssMI	GATC	5 cut(s)	33, 108, 373, 628, 1006
BssT1I	CCWWGG	2 cut(s)	173, 1035
Bst2UI	CCWGG	1 cut(s)	300
Bst4CI	ACNGT	2 cut(s)	725, 1019
Bst6I	CTCTTC	2 cut(s)	57, 155
BstC8I	GCNNGC	4 cut(s)	170, 588, 648, 853
BstDEI	CTNAG	2 cut(s)	339, 358
BstDSI	CCRYGG	1 cut(s)	1035
BstENI	CCTNNNNNAGG	1 cut(s)	476
BstF5I	GGATG	3 cut(s)	746, 809, 920
BstFNI	CGCG	1 cut(s)	855
BstKTI	GATC	5 cut(s)	36, 111, 376, 631, 1009
BstMAI	GTCTC	1 cut(s)	676
BstMBI	GATC	5 cut(s)	33, 108, 373, 628, 1006
BstMWI	GCNNNNNNNGC	2 cut(s)	857, 1040
BstNI	CCWGG	1 cut(s)	300
BstNSI	RCATGY	1 cut(s)	934
BstPAI	GACNNNNGTC	1 cut(s)	668
BstSCI	CCNGG	1 cut(s)	298
BstSFI	CTRYAG	2 cut(s)	721, 999
BstSLI	GKGCMC	1 cut(s)	53
BstUI	CGCG	1 cut(s)	855
BstV1I	GCAGC	3 cut(s)	609, 630, 757
BstV2I	GAAGAC	3 cut(s)	329, 831, 909
BsuI	GTATCC	1 cut(s)	106
BsuRI	GGCC	4 cut(s)	277, 432, 797, 911
BtgI	CCRYGG	1 cut(s)	1035
BtsCI	GGATG	3 cut(s)	746, 809, 920
BtsIMutI	CAGTG	1 cut(s)	730
BveI	ACCTGC	1 cut(s)	261
Cac8I	GCNNGC	4 cut(s)	170, 588, 648, 853
Cfr13I	GGNCC	1 cut(s)	883
CseI	GACGC	1 cut(s)	836
CviAII	CATG	8 cut(s)	92, 209, 254, 652, 931, 964, 1011, 1036
DdeI	CTNAG	2 cut(s)	339, 358
DpnI	GATC	5 cut(s)	35, 110, 375, 630, 1008
DpnII	GATC	5 cut(s)	33, 108, 373, 628, 1006
EaeI	YGGCCR	1 cut(s)	909
Eam1104I	CTCTTC	2 cut(s)	57, 155
EarI	CTCTTC	2 cut(s)	57, 155
Eco130I	CCWWGG	2 cut(s)	173, 1035
Eco31I	GGTCTC	1 cut(s)	676
Eco47I	GGWCC	1 cut(s)	883
Eco57I	CTGAAG	3 cut(s)	81, 224, 864
EcoNI	CCTNNNNNAGG	1 cut(s)	476
EcoRII	CCWGG	1 cut(s)	298
EcoT14I	CCWWGG	2 cut(s)	173, 1035
ErhI	CCWWGG	2 cut(s)	173, 1035
FaeI	CATG	8 cut(s)	95, 212, 257, 655, 934, 967, 1014, 1039
FalI	AAGNNNNNCTT	2 cut(s)	129, 161
FaqI	GGGAC	1 cut(s)	896
FatI	CATG	8 cut(s)	91, 208, 253, 651, 930, 963, 1010, 1035
FbaI	TGATCA	1 cut(s)	33
FblI	GTMKAC	1 cut(s)	755
Fnu4HI	GCNGC	3 cut(s)	598, 644, 771
FokI	GGATG	3 cut(s)	733, 816, 907
Fsp4HI	GCNGC	3 cut(s)	598, 644, 771
FspBI	CTAG	3 cut(s)	174, 594, 821
GluI	GCNGC	3 cut(s)	598, 644, 771
HaeIII	GGCC	4 cut(s)	277, 432, 797, 911
HgaI	GACGC	1 cut(s)	836
Hin1II	CATG	8 cut(s)	95, 212, 257, 655, 934, 967, 1014, 1039
HinfI	GANTC	2 cut(s)	453, 914
HphI	GGTGA	1 cut(s)	780
Hpy166II	GTNNAC	1 cut(s)	756
Hpy188I	TCNGA	4 cut(s)	132, 204, 361, 514
Hpy188III	TCNNGA	4 cut(s)	444, 457, 1073, 1085
Hpy8I	GTNNAC	1 cut(s)	756
HpyAV	CCTTC	5 cut(s)	40, 226, 403, 714, 722
HpyCH4III	ACNGT	2 cut(s)	725, 1019
HpyCH4V	TGCA	7 cut(s)	74, 168, 257, 586, 646, 778, 898
HpyF10VI	GCNNNNNNNGC	2 cut(s)	857, 1040
HpyF3I	CTNAG	2 cut(s)	339, 358
Hsp92II	CATG	8 cut(s)	95, 212, 257, 655, 934, 967, 1014, 1039
Ksp22I	TGATCA	1 cut(s)	33
Kzo9I	GATC	5 cut(s)	33, 108, 373, 628, 1006
LmnI	GCTCC	2 cut(s)	706, 857
Lsp1109I	GCAGC	3 cut(s)	609, 630, 757
LweI	GCATC	2 cut(s)	61, 838
MaeI	CTAG	3 cut(s)	174, 594, 821
MaeIII	GTNAC	5 cut(s)	23, 113, 379, 661, 786
MalI	GATC	5 cut(s)	35, 110, 375, 630, 1008
MboI	GATC	5 cut(s)	33, 108, 373, 628, 1006
MhlI	GDGCHC	1 cut(s)	53
MluCI	AATT	7 cut(s)	184, 236, 369, 402, 605, 715, 876
MlyI	GAGTC	1 cut(s)	923
MnlI	CCTC	9 cut(s)	21, 58, 186, 223, 297, 661, 760, 801, 988
MroXI	GAANNNNTTC	1 cut(s)	1080
MseI	TTAA	2 cut(s)	147, 936
MspA1I	CMGCKG	1 cut(s)	643
MspR9I	CCNGG	1 cut(s)	300
Mva1269I	GAATGC	2 cut(s)	453, 496
MvaI	CCWGG	1 cut(s)	300
MvnI	CGCG	1 cut(s)	855
MwoI	GCNNNNNNNGC	2 cut(s)	857, 1040
NcoI	CCATGG	1 cut(s)	1035
NdeII	GATC	5 cut(s)	33, 108, 373, 628, 1006
NlaIII	CATG	8 cut(s)	95, 212, 257, 655, 934, 967, 1014, 1039
NlaIV	GGNNCC	2 cut(s)	561, 884
NmeAIII	GCCGAG	1 cut(s)	937
NmuCI	GTSAC	3 cut(s)	23, 661, 786
NspI	RCATGY	1 cut(s)	934
PaqCI	CACCTGC	1 cut(s)	261
PciI	ACATGT	1 cut(s)	930
PctI	GAATGC	2 cut(s)	453, 496
PdmI	GAANNNNTTC	1 cut(s)	1080
PfeI	GAWTC	1 cut(s)	453
PkrI	GCNGC	3 cut(s)	599, 645, 772
PleI	GAGTC	1 cut(s)	922
PpsI	GAGTC	1 cut(s)	922
PscI	ACATGT	1 cut(s)	930
PshAI	GACNNNNGTC	1 cut(s)	668
Psp6I	CCWGG	1 cut(s)	298
PspGI	CCWGG	1 cut(s)	298
PspN4I	GGNNCC	2 cut(s)	561, 884
PspPI	GGNCC	1 cut(s)	883
PvuII	CAGCTG	1 cut(s)	643
SaqAI	TTAA	2 cut(s)	147, 936
SatI	GCNGC	3 cut(s)	598, 644, 771
Sau3AI	GATC	5 cut(s)	33, 108, 373, 628, 1006
Sau96I	GGNCC	1 cut(s)	883
SchI	GAGTC	1 cut(s)	923
ScrFI	CCNGG	1 cut(s)	300
SduI	GDGCHC	1 cut(s)	53
SfaNI	GCATC	2 cut(s)	61, 838
SfcI	CTRYAG	2 cut(s)	721, 999
SinI	GGWCC	1 cut(s)	883
SmlI	CTYRAG	1 cut(s)	190
SmoI	CTYRAG	1 cut(s)	190
Sse9I	AATT	7 cut(s)	184, 236, 369, 402, 605, 715, 876
SsiI	CCGC	1 cut(s)	855
SspMI	CTAG	3 cut(s)	174, 594, 821
StyD4I	CCNGG	1 cut(s)	298
StyI	CCWWGG	2 cut(s)	173, 1035
TaaI	ACNGT	2 cut(s)	725, 1019
TaqI	TCGA	2 cut(s)	576, 609
TasI	AATT	7 cut(s)	184, 236, 369, 402, 605, 715, 876
TfiI	GAWTC	1 cut(s)	453
Tru1I	TTAA	2 cut(s)	147, 936
Tru9I	TTAA	2 cut(s)	147, 936
TscAI	CASTG	1 cut(s)	730
TseFI	GTSAC	3 cut(s)	23, 661, 786
TseI	GCWGC	3 cut(s)	597, 643, 770
Tsp45I	GTSAC	3 cut(s)	23, 661, 786
TspDTI	ATGAA	8 cut(s)	225, 242, 518, 668, 735, 753, 909, 1011
TspRI	CASTG	1 cut(s)	730
VpaK11BI	GGWCC	1 cut(s)	883
XagI	CCTNNNNNAGG	1 cut(s)	476
XapI	RAATTY	3 cut(s)	402, 605, 876
XceI	RCATGY	1 cut(s)	934
XmaJI	CCTAGG	1 cut(s)	173
XmiI	GTMKAC	1 cut(s)	755
XmnI	GAANNNNTTC	1 cut(s)	1080
XspI	CTAG	3 cut(s)	174, 594, 821

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.