Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7C

Orthogroup ID

OG0014884

Physical Location & Seq

Genomic Coordinates Forward (+)

13363293 .. 13364959

Gene Structure 1667 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7CG162000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 501 bp

ATGATTCAAATGGATCCTAGGGTAATTGCAGAAAATCTTTCTGAAGAGGAAATCATAGGCTTGAAGGAAATGTTTAAATCAATGGACACAGATAACAGTGGAACAATTACATTTGAAGAGTTAAAAGCGGGCCTTCCAAAGCTGGGTACCAAGCTTTCTGAGTCTGAAGTGAGACAGTTGATGGAAGCGGCTGATGTTGATGGAAATGGAACAATTGATTACATTGAGTTTATAACCGCTACAATGCACATGAACAGAATGGATAGAGAGGACCATTTATACACAGCCTTTGAATATTTCGACAAGGACAAGAGCGGGTACATCACGATGGAAGAATTGGAGCAAGCACTTAAGAAGTATAATATGGGTGATGAACAAACGATTAAGGATATCATCGCAGAAGTTGACACAGACCTTGATGGAAGGATCAACTATGATGAGTTTGTTGCCATGATGAGGAAAGGAAATCCTGAGTTGGTCACAAACAGAAGAAGAAAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004683 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005773 GO:0005829 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006970 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009628 GO:0009651 GO:0009719 GO:0009725 GO:0009737 GO:0009738 GO:0009755 GO:0009931 GO:0009987 GO:0010033 GO:0010119 GO:0010359 GO:0010857 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0018105 GO:0018193 GO:0018209 GO:0019538 GO:0022898 GO:0023052 GO:0032409 GO:0032412 GO:0032870 GO:0032879 GO:0033993 GO:0034762 GO:0034765 GO:0035556 GO:0036211 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043269 GO:0043412 GO:0044070 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0046777 GO:0050789 GO:0050794 GO:0050896 GO:0051049 GO:0051716 GO:0065007 GO:0065009 GO:0070887 GO:0071215 GO:0071229 GO:0071310 GO:0071396 GO:0071495 GO:0071704 GO:0071944 GO:0097305 GO:0097306 GO:0140096 GO:1901564 GO:1901700 GO:1901701 GO:1903959

KEGG Pathways

Metabolic & Signaling

ko04626 ko05145 map04626 map05145

Pfam Domains

Protein Families

EF-hand_1 EF-hand_5 EF-hand_6 Pkinase

Protein Analysis

166

Amino Acids

19.18

Weight (kDa)

4.53

Isoelectric Point (pI)

29.1

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
EF-hand_1	PF00036	21 - 47	1.6e-08	EF hand domain
EF-hand_7	PF13499	21 - 81	4.4e-14	EF-hand domain pair
EF-hand_6	PF13405	21 - 49	3.9e-07	EF-hand domain
EF-hand_5	PF13202	21 - 43	4.6e-06	EF hand
EF-hand_8	PF13833	33 - 80	3.8e-08	EF-hand domain pair
EF-hand_7	PF13499	90 - 153	2.9e-17	EF-hand domain pair
EF-hand_6	PF13405	93 - 120	1.3e-07	EF-hand domain
EF-hand_1	PF00036	95 - 119	5.2e-07	EF hand domain
EF-hand_5	PF13202	95 - 115	1e-05	EF hand
EF-hand_8	PF13833	105 - 154	6.1e-09	EF-hand domain pair
EF-hand_1	PF00036	128 - 154	1.7e-07	EF hand domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0014884)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G23650
fragaria_vesca	FvH4_5g03610 FvH4_5g03610 FvH4_5g03610
malus_domestica	MD06G1095900.v1.1 MD14G1116100.v1.1
prunus_persica	Prupe.5G110500_v2.0.a1
rosa_chinensis	RchiOBHm_Chr7g0196111
rosa_laevigata	RLG00000004064
rosa_multiflora	Rmu_sc0013391.1_g000002
rosa_roxburghii	Rroxscaffold_3G00259800
rosa_rugosa	Rorug07G0030700
rosa_samantha	Rh7AG156500 Rh7BG158100 Rh7CG162000
rosa_wichuraiana	Rw7G013370

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	233
Acc65I	GGTACC	1 cut(s)	146
AccB1I	GGYRCC	1 cut(s)	146
AccBSI	CCGCTC	1 cut(s)	315
AciI	CCGC	4 cut(s)	128, 188, 237, 315
AclWI	GGATC	3 cut(s)	8, 21, 434
AcuI	CTGAAG	2 cut(s)	63, 186
AfaI	GTAC	2 cut(s)	148, 320
AfiI	CCNNNNNNNGG	2 cut(s)	143, 456
AflII	CTTAAG	1 cut(s)	350
AgsI	TTSAA	4 cut(s)	8, 64, 116, 293
AluBI	AGCT	2 cut(s)	142, 154
AluI	AGCT	2 cut(s)	142, 154
Alw26I	GTCTC	1 cut(s)	166
AlwI	GGATC	3 cut(s)	8, 21, 434
AoxI	GGCC	1 cut(s)	130
Asp718I	GGTACC	1 cut(s)	146
AspA2I	CCTAGG	1 cut(s)	17
AspS9I	GGNCC	2 cut(s)	130, 271
AsuHPI	GGTGA	1 cut(s)	380
AvaII	GGWCC	1 cut(s)	271
AvrII	CCTAGG	1 cut(s)	17
BamHI	GGATCC	1 cut(s)	13
BanI	GGYRCC	1 cut(s)	146
BccI	CCATC	4 cut(s)	175, 194, 322, 413
BcoDI	GTCTC	1 cut(s)	166
BfaI	CTAG	1 cut(s)	18
BfrI	CTTAAG	1 cut(s)	350
BisI	GCNGC	1 cut(s)	189
BlnI	CCTAGG	1 cut(s)	17
BlsI	GCNGC	1 cut(s)	190
Bme18I	GGWCC	1 cut(s)	271
BmgT120I	GGNCC	2 cut(s)	130, 271
BmiI	GGNNCC	2 cut(s)	15, 148
BsaJI	CCNNGG	1 cut(s)	17
Bsc4I	CCNNNNNNNGG	2 cut(s)	143, 456
BseDI	CCNNGG	1 cut(s)	17
BseLI	CCNNNNNNNGG	2 cut(s)	143, 456
BseMII	CTCAG	2 cut(s)	150, 462
BseYI	CCCAGC	1 cut(s)	142
BshFI	GGCC	1 cut(s)	132
BshNI	GGYRCC	1 cut(s)	146
BslI	CCNNNNNNNGG	2 cut(s)	143, 456
BsmAI	GTCTC	1 cut(s)	166
BsnI	GGCC	1 cut(s)	132
Bsp143I	GATC	2 cut(s)	13, 426
BspACI	CCGC	4 cut(s)	128, 188, 237, 315
BspANI	GGCC	1 cut(s)	132
BspCNI	CTCAG	2 cut(s)	151, 463
BspLI	GGNNCC	2 cut(s)	15, 148
BspPI	GGATC	3 cut(s)	8, 21, 434
BspT107I	GGYRCC	1 cut(s)	146
BspTI	CTTAAG	1 cut(s)	350
BsrBI	CCGCTC	1 cut(s)	315
BssECI	CCNNGG	1 cut(s)	17
BssMI	GATC	2 cut(s)	13, 426
BssT1I	CCWWGG	1 cut(s)	17
Bst4CI	ACNGT	2 cut(s)	98, 177
Bst6I	CTCTTC	2 cut(s)	39, 111
BstAFI	CTTAAG	1 cut(s)	350
BstC8I	GCNNGC	2 cut(s)	130, 345
BstDEI	CTNAG	2 cut(s)	159, 471
BstKTI	GATC	2 cut(s)	16, 429
BstMAI	GTCTC	1 cut(s)	166
BstMBI	GATC	2 cut(s)	13, 426
BstX2I	RGATCY	1 cut(s)	13
BstYI	RGATCY	1 cut(s)	13
BsuRI	GGCC	1 cut(s)	132
BtgZI	GCGATG	1 cut(s)	379
BtsIMutI	CAGTG	1 cut(s)	103
Cac8I	GCNNGC	2 cut(s)	130, 345
Cfr13I	GGNCC	2 cut(s)	130, 271
Csp6I	GTAC	2 cut(s)	147, 319
CviAII	CATG	2 cut(s)	250, 451
CviJI	RGCY	6 cut(s)	60, 132, 142, 154, 191, 287
CviKI_1	RGCY	6 cut(s)	60, 132, 142, 154, 191, 287
CviQI	GTAC	2 cut(s)	147, 319
DdeI	CTNAG	2 cut(s)	159, 471
DpnI	GATC	2 cut(s)	15, 428
DpnII	GATC	2 cut(s)	13, 426
DraI	TTTAAA	1 cut(s)	76
Eam1104I	CTCTTC	2 cut(s)	39, 111
EarI	CTCTTC	2 cut(s)	39, 111
Eco130I	CCWWGG	1 cut(s)	17
Eco32I	GATATC	1 cut(s)	391
Eco47I	GGWCC	1 cut(s)	271
Eco57I	CTGAAG	2 cut(s)	63, 186
EcoRV	GATATC	1 cut(s)	391
EcoT14I	CCWWGG	1 cut(s)	17
ErhI	CCWWGG	1 cut(s)	17
FaeI	CATG	2 cut(s)	253, 454
FaiI	YATR	8 cut(s)	56, 233, 251, 280, 360, 365, 435, 452
FalI	AAGNNNNNCTT	2 cut(s)	117, 149
FatI	CATG	2 cut(s)	249, 450
FauI	CCCGC	2 cut(s)	121, 308
Fnu4HI	GCNGC	1 cut(s)	189
Fsp4HI	GCNGC	1 cut(s)	189
FspBI	CTAG	1 cut(s)	18
GluI	GCNGC	1 cut(s)	189
GsaI	CCCAGC	1 cut(s)	146
HaeIII	GGCC	1 cut(s)	132
Hin1II	CATG	2 cut(s)	253, 454
HincII	GTYRAC	1 cut(s)	406
HindII	GTYRAC	1 cut(s)	406
HindIII	AAGCTT	1 cut(s)	152
HinfI	GANTC	2 cut(s)	4, 161
HphI	GGTGA	1 cut(s)	380
Hpy166II	GTNNAC	1 cut(s)	406
Hpy188I	TCNGA	3 cut(s)	43, 160, 166
Hpy188III	TCNNGA	2 cut(s)	325, 470
Hpy8I	GTNNAC	1 cut(s)	406
HpyAV	CCTTC	3 cut(s)	58, 143, 417
HpyCH4III	ACNGT	2 cut(s)	98, 177
HpyCH4V	TGCA	2 cut(s)	29, 247
HpyF3I	CTNAG	2 cut(s)	159, 471
Hsp92II	CATG	2 cut(s)	253, 454
KpnI	GGTACC	1 cut(s)	150
Kzo9I	GATC	2 cut(s)	13, 426
LmnI	GCTCC	1 cut(s)	340
LpnPI	CCDG	2 cut(s)	128, 483
MaeI	CTAG	1 cut(s)	18
MaeIII	GTNAC	1 cut(s)	478
MalI	GATC	2 cut(s)	15, 428
MbiI	CCGCTC	1 cut(s)	315
MboI	GATC	2 cut(s)	13, 426
MboII	GAAGA	4 cut(s)	56, 128, 344, 501
MfeI	CAATTG	1 cut(s)	213
MflI	RGATCY	1 cut(s)	13
MluCI	AATT	4 cut(s)	24, 105, 213, 335
MlyI	GAGTC	1 cut(s)	170
MnlI	CCTC	3 cut(s)	40, 262, 450
MseI	TTAA	4 cut(s)	75, 122, 351, 384
MslI	CAYNNNNRTG	1 cut(s)	326
MspCI	CTTAAG	1 cut(s)	350
MunI	CAATTG	1 cut(s)	213
NdeII	GATC	2 cut(s)	13, 426
NlaIII	CATG	2 cut(s)	253, 454
NlaIV	GGNNCC	2 cut(s)	15, 148
NmuCI	GTSAC	1 cut(s)	478
PfeI	GAWTC	1 cut(s)	4
PkrI	GCNGC	1 cut(s)	190
PleI	GAGTC	1 cut(s)	169
PpsI	GAGTC	1 cut(s)	169
PsiI	TTATAA	1 cut(s)	233
PspFI	CCCAGC	1 cut(s)	142
PspN4I	GGNNCC	2 cut(s)	15, 148
PspPI	GGNCC	2 cut(s)	130, 271
PsuI	RGATCY	1 cut(s)	13
RsaI	GTAC	2 cut(s)	148, 320
RsaNI	GTAC	2 cut(s)	147, 319
RseI	CAYNNNNRTG	1 cut(s)	326
SaqAI	TTAA	4 cut(s)	75, 122, 351, 384
SatI	GCNGC	1 cut(s)	189
Sau3AI	GATC	2 cut(s)	13, 426
Sau96I	GGNCC	2 cut(s)	130, 271
SchI	GAGTC	1 cut(s)	170
SetI	ASST	3 cut(s)	144, 156, 417
SinI	GGWCC	1 cut(s)	271
SmiMI	CAYNNNNRTG	1 cut(s)	326
SmlI	CTYRAG	1 cut(s)	350
SmoI	CTYRAG	1 cut(s)	350
Sse9I	AATT	4 cut(s)	24, 105, 213, 335
SsiI	CCGC	4 cut(s)	128, 188, 237, 315
SspI	AATATT	1 cut(s)	296
SspMI	CTAG	1 cut(s)	18
StyI	CCWWGG	1 cut(s)	17
TaaI	ACNGT	2 cut(s)	98, 177
TaqI	TCGA	1 cut(s)	300
TasI	AATT	4 cut(s)	24, 105, 213, 335
TauI	GCSGC	1 cut(s)	191
TfiI	GAWTC	1 cut(s)	4
Tru1I	TTAA	4 cut(s)	75, 122, 351, 384
Tru9I	TTAA	4 cut(s)	75, 122, 351, 384
TscAI	CASTG	1 cut(s)	103
TseFI	GTSAC	1 cut(s)	478
Tsp45I	GTSAC	1 cut(s)	478
TspDTI	ATGAA	2 cut(s)	266, 387
TspRI	CASTG	1 cut(s)	103
Vha464I	CTTAAG	1 cut(s)	350
VpaK11BI	GGWCC	1 cut(s)	271
XmaJI	CCTAGG	1 cut(s)	17
XspI	CTAG	1 cut(s)	18

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.