Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0019057.1

Orthogroup ID

OG0015306

Physical Location & Seq

Genomic Coordinates Reverse (-)

2 .. 2036

Gene Structure 2035 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0019057.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1097 bp

atggcaacggagatgagctgggtgtggatgagacgaatcgtactccgatcgaaccctctacctctccacaaggctcccacgccctctcctctctcctctcgattcctgaaacactcaccaccgctcctcattcccctcgtttcgtcccaccgcctctcgttttccacatccaccgccgcttgttctctcccagacactctcgcctccgtcgacgacacttgccccgcttttggtgagccttcgtttacagctggagtctcgaacaaaagctcgaaggtgcttcttaaagggatgcgatacgatgagcttgagaaatgggttcaatcacaaggctacaggcccggccaagctatgatgctatggaaacgtctctatgggaattatatttgggcgcatcactgtgatcagttggaaggtttaaacaaagattttaggaagatgttgagtgagaatgccgagttcaaggcattgtctttgaagcaaattattaccgcagcggatggaactaggaagcggatggaactaggaaggaggtttcagattttattcactttggaagatgggatggtgattgaaaccgttgtcataccttctgatagtagcaggaatactgtttgtgtttcaagtcaagtgggctgtggcatgaattgccagttctgctacaccggcaggatgggtctaaggagacatctgactgcagctgagattgtagagcaggctgtatttgcgcgatccctgctcacaagtgaagttggcgagattaccaatgttgtattcatgggaatgggagaaccgcttcacaacattgacaatgttattaaagctgcagacattatggtggatgatcaaggccttcatttcagtcctcgcaagataactgtttcaacaagtgggcttgtccctcagctgaggcgttacctcagagagtctaattgtgctatagctgttagtttgaatgcaactacagatgaggtcagaaactggatcatgccaattaaccggaagtataatatagctgtgcttcttcggactcttaaagaggaacttcgcttcaagaataactacaaagttctatttgaatatgtaatgcttgcagg

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Fer4_14 HD Radical_SAM

Protein Analysis

366

Amino Acids

41.24

Weight (kDa)

9.23

Isoelectric Point (pI)

48.49

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015306)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G60230
fragaria_vesca	FvH4_4g34530 FvH4_4g34530
malus_domestica	MD16G1092200.v1.1
prunus_persica	Prupe.1G254200_v2.0.a1
pyrus_communis	pycom16g07860
rosa_chinensis	RchiOBHm_Chr4g0443901
rosa_laevigata	RLG00000005878
rosa_multiflora	Rmu_sc0019057.1_g000001
rosa_roxburghii	Rroxscaffold_5G00384450
rosa_rugosa	Rorug04G0348200
rosa_samantha	Rh4AG408700 Rh4BG419800 Rh4CG433800 Rh4DG414800
rosa_wichuraiana	Rw4G035100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	124
AccI	GTMKAC	1 cut(s)	210
AccII	CGCG	1 cut(s)	730
AciI	CCGC	9 cut(s)	122, 151, 174, 177, 225, 492, 497, 514, 794
AclWI	GGATC	2 cut(s)	726, 992
AcoI	YGGCCR	1 cut(s)	343
AfaI	GTAC	1 cut(s)	42
AfiI	CCNNNNNNNGG	1 cut(s)	230
AgsI	TTSAA	9 cut(s)	323, 463, 478, 575, 624, 885, 955, 1054, 1079
AjuI	GAANNNNNNNTTGG	2 cut(s)	758, 790
Alw26I	GTCTC	4 cut(s)	25, 262, 374, 679
AlwI	GGATC	2 cut(s)	726, 992
AlwNI	CAGNNNCTG	1 cut(s)	981
AoxI	GGCC	3 cut(s)	338, 343, 850
ApeKI	GCWGC	3 cut(s)	494, 698, 824
Asp700I	GAANNNNTTC	1 cut(s)	795
AspLEI	GCGC	2 cut(s)	394, 730
AspS9I	GGNCC	1 cut(s)	339
AsuC2I	CCSGG	1 cut(s)	342
AsuHPI	GGTGA	3 cut(s)	108, 245, 580
BbvCI	CCTCAGC	2 cut(s)	903, 908
BbvI	GCAGC	3 cut(s)	506, 710, 811
BccI	CCATC	5 cut(s)	494, 511, 554, 559, 667
BclI	TGATCA	2 cut(s)	403, 844
BcnI	CCSGG	1 cut(s)	342
BcoDI	GTCTC	4 cut(s)	25, 262, 374, 679
BfaI	CTAG	2 cut(s)	507, 524
BfmI	CTRYAG	5 cut(s)	334, 696, 825, 939, 963
BisI	GCNGC	4 cut(s)	177, 495, 699, 825
BlsI	GCNGC	4 cut(s)	178, 496, 700, 826
Bme1390I	CCNGG	1 cut(s)	342
BmgT120I	GGNCC	1 cut(s)	339
BmiI	GGNNCC	1 cut(s)	75
BmrFI	CCNGG	1 cut(s)	342
BmsI	GCATC	3 cut(s)	282, 345, 403
BpmI	CTGGAG	1 cut(s)	273
Bpu10I	CCTNAGC	2 cut(s)	903, 908
BpuEI	CTTGAG	1 cut(s)	329
BpuMI	CCSGG	1 cut(s)	342
BsaWI	WCCGGW	1 cut(s)	999
BsaXI	ACNNNNNCTCC	4 cut(s)	70, 100, 108, 138
Bsc4I	CCNNNNNNNGG	1 cut(s)	230
Bse118I	RCCGGY	1 cut(s)	665
Bse1I	ACTGG	2 cut(s)	652, 986
BseGI	GGATG	8 cut(s)	33, 167, 297, 505, 522, 570, 678, 847
BseLI	CCNNNNNNNGG	1 cut(s)	230
BseMII	CTCAG	4 cut(s)	693, 899, 917, 934
BseNI	ACTGG	2 cut(s)	652, 986
BseRI	GAGGAG	3 cut(s)	78, 85, 116
BseXI	GCAGC	3 cut(s)	506, 710, 811
BseYI	CCCAGC	1 cut(s)	18
Bsh1236I	CGCG	1 cut(s)	730
Bsh1285I	CGRYCG	1 cut(s)	50
BshFI	GGCC	3 cut(s)	340, 345, 852
BsiEI	CGRYCG	1 cut(s)	50
BsiSI	CCGG	3 cut(s)	342, 666, 1000
BslFI	GGGAC	2 cut(s)	130, 884
BslI	CCNNNNNNNGG	1 cut(s)	230
BsmAI	GTCTC	4 cut(s)	25, 262, 374, 679
BsmBI	CGTCTC	2 cut(s)	25, 374
BsmFI	GGGAC	2 cut(s)	130, 884
BsmI	GAATGC	2 cut(s)	457, 961
BsnI	GGCC	3 cut(s)	340, 345, 852
Bsp143I	GATC	5 cut(s)	47, 403, 731, 844, 984
BspACI	CCGC	9 cut(s)	122, 151, 174, 177, 225, 492, 497, 514, 794
BspANI	GGCC	3 cut(s)	340, 345, 852
BspCNI	CTCAG	4 cut(s)	694, 900, 916, 933
BspFNI	CGCG	1 cut(s)	730
BspLI	GGNNCC	1 cut(s)	75
BspMAI	CTGCAG	2 cut(s)	700, 829
BspPI	GGATC	2 cut(s)	726, 992
BsrBI	CCGCTC	1 cut(s)	124
BsrFI	RCCGGY	1 cut(s)	665
BsrI	ACTGG	2 cut(s)	652, 986
BssAI	RCCGGY	1 cut(s)	665
BssMI	GATC	5 cut(s)	47, 403, 731, 844, 984
Bst4CI	ACNGT	4 cut(s)	401, 580, 613, 880
BstAPI	GCANNNNNTGC	1 cut(s)	648
BstC8I	GCNNGC	2 cut(s)	717, 1092
BstDEI	CTNAG	5 cut(s)	680, 702, 903, 908, 920
BstF5I	GGATG	8 cut(s)	33, 167, 297, 505, 522, 570, 678, 847
BstFNI	CGCG	1 cut(s)	730
BstHHI	GCGC	2 cut(s)	394, 730
BstKTI	GATC	5 cut(s)	50, 406, 734, 847, 987
BstMAI	GTCTC	4 cut(s)	25, 262, 374, 679
BstMBI	GATC	5 cut(s)	47, 403, 731, 844, 984
BstMCI	CGRYCG	1 cut(s)	50
BstMWI	GCNNNNNNNGC	5 cut(s)	648, 657, 666, 725, 736
BstSCI	CCNGG	1 cut(s)	340
BstSFI	CTRYAG	5 cut(s)	334, 696, 825, 939, 963
BstUI	CGCG	1 cut(s)	730
BstV1I	GCAGC	3 cut(s)	506, 710, 811
BsuRI	GGCC	3 cut(s)	340, 345, 852
BtsCI	GGATG	8 cut(s)	33, 167, 297, 505, 522, 570, 678, 847
BtsIMutI	CAGTG	1 cut(s)	397
Cac8I	GCNNGC	2 cut(s)	717, 1092
CaiI	CAGNNNCTG	1 cut(s)	981
CfoI	GCGC	2 cut(s)	394, 730
Cfr10I	RCCGGY	1 cut(s)	665
Cfr13I	GGNCC	1 cut(s)	339
Csp6I	GTAC	1 cut(s)	41
CspCI	CAANNNNNGTGG	2 cut(s)	612, 647
CviAII	CATG	3 cut(s)	643, 778, 988
CviQI	GTAC	1 cut(s)	41
DdeI	CTNAG	5 cut(s)	680, 702, 903, 908, 920
DpnI	GATC	5 cut(s)	49, 405, 733, 846, 986
DpnII	GATC	5 cut(s)	47, 403, 731, 844, 984
DraI	TTTAAA	1 cut(s)	420
EaeI	YGGCCR	1 cut(s)	343
Eco147I	AGGCCT	1 cut(s)	852
Esp3I	CGTCTC	2 cut(s)	25, 374
FaeI	CATG	3 cut(s)	646, 781, 991
FalI	AAGNNNNNCTT	2 cut(s)	1029, 1061
FaqI	GGGAC	2 cut(s)	130, 884
FatI	CATG	3 cut(s)	642, 777, 987
FauI	CCCGC	1 cut(s)	232
FbaI	TGATCA	2 cut(s)	403, 844
FblI	GTMKAC	1 cut(s)	210
Fnu4HI	GCNGC	4 cut(s)	177, 495, 699, 825
FokI	GGATG	8 cut(s)	40, 154, 304, 512, 529, 577, 685, 854
Fsp4HI	GCNGC	4 cut(s)	177, 495, 699, 825
FspBI	CTAG	2 cut(s)	507, 524
GlaI	GCGC	2 cut(s)	393, 729
GluI	GCNGC	4 cut(s)	177, 495, 699, 825
GsaI	CCCAGC	1 cut(s)	22
GsuI	CTGGAG	1 cut(s)	273
HaeIII	GGCC	3 cut(s)	340, 345, 852
HapII	CCGG	3 cut(s)	342, 666, 1000
HhaI	GCGC	2 cut(s)	394, 730
Hin1II	CATG	3 cut(s)	646, 781, 991
Hin6I	GCGC	2 cut(s)	392, 728
HinP1I	GCGC	2 cut(s)	392, 728
HincII	GTYRAC	1 cut(s)	211
HindII	GTYRAC	1 cut(s)	211
HinfI	GANTC	5 cut(s)	36, 102, 255, 926, 1030
HpaII	CCGG	3 cut(s)	342, 666, 1000
HphI	GGTGA	3 cut(s)	108, 245, 580
Hpy166II	GTNNAC	2 cut(s)	211, 246
Hpy188I	TCNGA	7 cut(s)	47, 540, 595, 693, 923, 977, 1029
Hpy188III	TCNNGA	4 cut(s)	99, 106, 259, 1054
Hpy8I	GTNNAC	2 cut(s)	211, 246
Hpy99I	CGWCG	2 cut(s)	212, 215
HpyAV	CCTTC	6 cut(s)	249, 268, 407, 522, 600, 863
HpyCH4III	ACNGT	4 cut(s)	401, 580, 613, 880
HpyCH4IV	ACGT	1 cut(s)	367
HpyCH4V	TGCA	4 cut(s)	698, 827, 959, 1094
HpyF10VI	GCNNNNNNNGC	5 cut(s)	648, 657, 666, 725, 736
HpyF3I	CTNAG	5 cut(s)	680, 702, 903, 908, 920
HpySE526I	ACGT	1 cut(s)	367
Hsp92II	CATG	3 cut(s)	646, 781, 991
HspAI	GCGC	2 cut(s)	392, 728
Ksp22I	TGATCA	2 cut(s)	403, 844
Kzo9I	GATC	5 cut(s)	47, 403, 731, 844, 984
LmnI	GCTCC	2 cut(s)	79, 129
Lsp1109I	GCAGC	3 cut(s)	506, 710, 811
LweI	GCATC	3 cut(s)	282, 345, 403
MaeI	CTAG	2 cut(s)	507, 524
MaeII	ACGT	1 cut(s)	367
MaeIII	GTNAC	1 cut(s)	914
MalI	GATC	5 cut(s)	49, 405, 733, 846, 986
MbiI	CCGCTC	1 cut(s)	124
MboI	GATC	5 cut(s)	47, 403, 731, 844, 984
MboII	GAAGA	3 cut(s)	448, 569, 1016
MluCI	AATT	5 cut(s)	379, 483, 646, 931, 993
MlyI	GAGTC	3 cut(s)	264, 935, 1024
MmeI	TCCRAC	1 cut(s)	390
MroXI	GAANNNNTTC	1 cut(s)	795
MseI	TTAA	5 cut(s)	285, 419, 819, 996, 1035
MslI	CAYNNNNRTG	3 cut(s)	399, 782, 836
MspA1I	CMGCKG	4 cut(s)	251, 497, 701, 907
MspI	CCGG	3 cut(s)	342, 666, 1000
MspR9I	CCNGG	1 cut(s)	342
MssI	GTTTAAAC	1 cut(s)	420
Mva1269I	GAATGC	2 cut(s)	457, 961
MvnI	CGCG	1 cut(s)	730
MwoI	GCNNNNNNNGC	5 cut(s)	648, 657, 666, 725, 736
NciI	CCSGG	1 cut(s)	342
NdeII	GATC	5 cut(s)	47, 403, 731, 844, 984
NlaIII	CATG	3 cut(s)	646, 781, 991
NlaIV	GGNNCC	1 cut(s)	75
NmeAIII	GCCGAG	1 cut(s)	481
PceI	AGGCCT	1 cut(s)	852
PcsI	WCGNNNNNNNCGW	1 cut(s)	207
PctI	GAATGC	2 cut(s)	457, 961
PdmI	GAANNNNTTC	1 cut(s)	795
PfeI	GAWTC	2 cut(s)	36, 102
PkrI	GCNGC	4 cut(s)	178, 496, 700, 826
Ple19I	CGATCG	1 cut(s)	50
PleI	GAGTC	3 cut(s)	263, 934, 1024
PmeI	GTTTAAAC	1 cut(s)	420
PpsI	GAGTC	3 cut(s)	263, 934, 1024
PspFI	CCCAGC	1 cut(s)	18
PspN4I	GGNNCC	1 cut(s)	75
PspPI	GGNCC	1 cut(s)	339
PstI	CTGCAG	2 cut(s)	700, 829
PstNI	CAGNNNCTG	1 cut(s)	981
PvuI	CGATCG	1 cut(s)	50
PvuII	CAGCTG	3 cut(s)	251, 701, 907
RsaI	GTAC	1 cut(s)	42
RsaNI	GTAC	1 cut(s)	41
RseI	CAYNNNNRTG	3 cut(s)	399, 782, 836
SalI	GTCGAC	1 cut(s)	209
SaqAI	TTAA	5 cut(s)	285, 419, 819, 996, 1035
SatI	GCNGC	4 cut(s)	177, 495, 699, 825
Sau3AI	GATC	5 cut(s)	47, 403, 731, 844, 984
Sau96I	GGNCC	1 cut(s)	339
SchI	GAGTC	3 cut(s)	264, 935, 1024
ScrFI	CCNGG	1 cut(s)	342
SfaNI	GCATC	3 cut(s)	282, 345, 403
SfcI	CTRYAG	5 cut(s)	334, 696, 825, 939, 963
SgrDI	CGTCGACG	1 cut(s)	209
SmiMI	CAYNNNNRTG	3 cut(s)	399, 782, 836
SmlI	CTYRAG	1 cut(s)	308
SmoI	CTYRAG	1 cut(s)	308
Sse9I	AATT	5 cut(s)	379, 483, 646, 931, 993
SseBI	AGGCCT	1 cut(s)	852
SsiI	CCGC	9 cut(s)	122, 151, 174, 177, 225, 492, 497, 514, 794
SspMI	CTAG	2 cut(s)	507, 524
StuI	AGGCCT	1 cut(s)	852
StyD4I	CCNGG	1 cut(s)	340
TaaI	ACNGT	4 cut(s)	401, 580, 613, 880
TaiI	ACGT	1 cut(s)	370
TaqI	TCGA	5 cut(s)	50, 100, 210, 260, 272
TasI	AATT	5 cut(s)	379, 483, 646, 931, 993
TauI	GCSGC	1 cut(s)	179
TfiI	GAWTC	2 cut(s)	36, 102
Tru1I	TTAA	5 cut(s)	285, 419, 819, 996, 1035
Tru9I	TTAA	5 cut(s)	285, 419, 819, 996, 1035
TscAI	CASTG	1 cut(s)	404
TseI	GCWGC	3 cut(s)	494, 698, 824
TspDTI	ATGAA	3 cut(s)	659, 766, 845
TspGWI	ACGGA	2 cut(s)	23, 196
TspRI	CASTG	1 cut(s)	404
XmiI	GTMKAC	1 cut(s)	210
XmnI	GAANNNNTTC	1 cut(s)	795
XspI	CTAG	2 cut(s)	507, 524

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.