Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0027197.1

Orthogroup ID

OG0009455

Physical Location & Seq

Genomic Coordinates Forward (+)

1524 .. 2540

Gene Structure 1017 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0027197.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1017 bp

atgagcgccaccacaccctcctcaccatctctaacagactccgatatcatccgcttagcccagtcctgcgccccaatcccctcctcccttctttccacccaatcccacccaaccctcctctcctacctcacttcccgctctcaatcctcctcaccctctcagcccgtctccgattacacactctctctcctctccctcatctcccaatctccccaaacccactctctctctaccctcctctcctctctcctcctctcctacacccacctcttcacctcctttcaaatcccacacgaccccaactccctcaagaccctccaattcttccacaccctattaccccacgtacccacttctcatctcccccaaataatagaacccattttgtcattttccccccaaattaccgactccgaaaacgcccagatcctcgatctcctcccacggtgcttgagcttgattcgaagctccgacgaggtcgaacgcggcggccatgtcgtcaattcggtgctcgatcagattctggagctcaattggtccaaaggactgttgatcaagatggtttcgatcgtaagggactttcctgttcttgataaattgagggccagagagtttgtagacaaggtgttcgatggaatgtctagcttagacttacaagacttgccgtcgcttgtctaccaattgctggttttggcgtcgaaagggtttgttaagaaggatgtgattgaagggattgtgatgttttttgggtcgaaaatggggaggaagaaggtgagctctatagtcaggcaagtggaaggtactgttttgctgcatgtcaactttgcggtgaagcaggacccttcattgggacaagaggtgatagggcttgtgaagtctgatcttagagctttcaatcattttactgttgctgttttgttatcggtttcgagggtgaggaggtttggtgaggcatcaatgggggctttgaaaatggcgattctaactgcataccgtgattacaagtttgctaagtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03460 map03460

Pfam Domains

Protein Families

FANCI_HD1 FANCI_HD2 FANCI_S1 FANCI_S2 FANCI_S4

Protein Analysis

338

Amino Acids

37.31

Weight (kDa)

8.79

Isoelectric Point (pI)

55.16

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009455)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G49110 AT5G49110 AT5G49110 AT5G49110
fragaria_vesca	FvH4_4g18510
malus_domestica	MD13G1166500.v1.1
prunus_persica	Prupe.1G132900_v2.0.a1 Prupe.1G132900_v2.0.a1
pyrus_communis	pycom13g14210
rosa_chinensis	RchiOBHm_Chr4g0423071
rosa_laevigata	RLG00000007589
rosa_multiflora	Rmu_sc0003669.1_g000001 Rmu_sc0023965.1_g000008 Rmu_sc0027197.1_g000001
rosa_roxburghii	Rroxscaffold_5G00365140
rosa_rugosa	Rorug04G0183400 Rorug04G0183500
rosa_samantha	Rh4AG243200 Rh4BG247900 Rh4CG257700 Rh4DG243000
rosa_wichuraiana	Rw4G020980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	685
AccBSI	CCGCTC	1 cut(s)	138
AccI	GTMKAC	2 cut(s)	618, 675
AccII	CGCG	1 cut(s)	486
AciI	CCGC	5 cut(s)	52, 136, 486, 489, 827
AclWI	GGATC	1 cut(s)	421
AcoI	YGGCCR	1 cut(s)	490
AcyI	GRCGYC	1 cut(s)	695
AfaI	GTAC	2 cut(s)	348, 802
AfiI	CCNNNNNNNGG	3 cut(s)	685, 847, 848
AgsI	TTSAA	4 cut(s)	284, 728, 895, 970
AhdI	GACNNNNNGTC	1 cut(s)	664
AluBI	AGCT	6 cut(s)	456, 468, 529, 645, 777, 890
AluI	AGCT	6 cut(s)	456, 468, 529, 645, 777, 890
Alw21I	GWGCWC	3 cut(s)	513, 531, 779
Alw26I	GTCTC	1 cut(s)	172
AlwI	GGATC	1 cut(s)	421
AlwNI	CAGNNNCTG	1 cut(s)	523
AoxI	GGCC	2 cut(s)	490, 603
ApeKI	GCWGC	1 cut(s)	811
ArsI	GACNNNNNNTTYG	2 cut(s)	611, 643
AspLEI	GCGC	2 cut(s)	8, 71
AspS9I	GGNCC	3 cut(s)	537, 603, 838
AsuHPI	GGTGA	8 cut(s)	15, 144, 265, 784, 841, 871, 946, 959
AsuII	TTCGAA	1 cut(s)	463
AvaII	GGWCC	2 cut(s)	537, 838
BanII	GRGCYC	2 cut(s)	531, 779
Bbv12I	GWGCWC	3 cut(s)	513, 531, 779
BbvI	GCAGC	1 cut(s)	798
BccI	CCATC	3 cut(s)	34, 553, 626
BceAI	ACGGC	1 cut(s)	649
BclI	TGATCA	1 cut(s)	552
BcoDI	GTCTC	1 cut(s)	172
BfaI	CTAG	1 cut(s)	642
BfmI	CTRYAG	1 cut(s)	780
BfoI	RGCGCY	1 cut(s)	9
BisI	GCNGC	3 cut(s)	487, 490, 812
BlpI	GCTNAGC	1 cut(s)	55
BlsI	GCNGC	3 cut(s)	488, 491, 813
Bme18I	GGWCC	2 cut(s)	537, 838
BmeRI	GACNNNNNGTC	1 cut(s)	664
BmgT120I	GGNCC	3 cut(s)	537, 603, 838
BmiI	GGNNCC	1 cut(s)	840
BmrI	ACTGGG	1 cut(s)	55
BmsI	GCATC	1 cut(s)	962
BmuI	ACTGGG	1 cut(s)	55
BpmI	CTGGAG	1 cut(s)	545
Bpu1102I	GCTNAGC	1 cut(s)	55
Bpu14I	TTCGAA	1 cut(s)	463
BpuEI	CTTGAG	2 cut(s)	293, 472
BsaAI	YACGTR	1 cut(s)	346
BsaHI	GRCGYC	1 cut(s)	695
BsaJI	CCNNGG	1 cut(s)	443
BsaXI	ACNNNNNCTCC	6 cut(s)	171, 201, 287, 317, 931, 961
Bsc4I	CCNNNNNNNGG	3 cut(s)	685, 847, 848
Bse1I	ACTGG	1 cut(s)	61
BseDI	CCNNGG	1 cut(s)	443
BseGI	GGATG	2 cut(s)	48, 724
BseLI	CCNNNNNNNGG	3 cut(s)	685, 847, 848
BseMII	CTCAG	1 cut(s)	173
BseNI	ACTGG	1 cut(s)	61
BseXI	GCAGC	1 cut(s)	798
Bsh1236I	CGCG	1 cut(s)	486
Bsh1285I	CGRYCG	1 cut(s)	570
BshFI	GGCC	2 cut(s)	492, 605
BsiEI	CGRYCG	1 cut(s)	570
BsiHKAI	GWGCWC	3 cut(s)	513, 531, 779
BslFI	GGGAC	2 cut(s)	590, 864
BslI	CCNNNNNNNGG	3 cut(s)	685, 847, 848
BsmAI	GTCTC	1 cut(s)	172
BsmBI	CGTCTC	1 cut(s)	172
BsmFI	GGGAC	2 cut(s)	590, 864
BsnI	GGCC	2 cut(s)	492, 605
Bsp119I	TTCGAA	1 cut(s)	463
Bsp1286I	GDGCHC	3 cut(s)	513, 531, 779
Bsp143I	GATC	6 cut(s)	426, 433, 514, 552, 567, 880
Bsp1720I	GCTNAGC	1 cut(s)	55
BspACI	CCGC	5 cut(s)	52, 136, 486, 489, 827
BspANI	GGCC	2 cut(s)	492, 605
BspCNI	CTCAG	1 cut(s)	172
BspFNI	CGCG	1 cut(s)	486
BspLI	GGNNCC	1 cut(s)	840
BspPI	GGATC	1 cut(s)	421
BspT104I	TTCGAA	1 cut(s)	463
BsrBI	CCGCTC	1 cut(s)	138
BsrI	ACTGG	1 cut(s)	61
BssECI	CCNNGG	1 cut(s)	443
BssMI	GATC	6 cut(s)	426, 433, 514, 552, 567, 880
BssNI	GRCGYC	1 cut(s)	695
Bst4CI	ACNGT	5 cut(s)	447, 549, 805, 907, 995
Bst6I	CTCTTC	1 cut(s)	275
BstACI	GRCGYC	1 cut(s)	695
BstBAI	YACGTR	1 cut(s)	346
BstBI	TTCGAA	1 cut(s)	463
BstDEI	CTNAG	5 cut(s)	55, 159, 646, 884, 1011
BstDSI	CCRYGG	1 cut(s)	443
BstF5I	GGATG	2 cut(s)	48, 724
BstFNI	CGCG	1 cut(s)	486
BstH2I	RGCGCY	1 cut(s)	9
BstHHI	GCGC	2 cut(s)	8, 71
BstKTI	GATC	6 cut(s)	429, 436, 517, 555, 570, 883
BstMAI	GTCTC	1 cut(s)	172
BstMBI	GATC	6 cut(s)	426, 433, 514, 552, 567, 880
BstMCI	CGRYCG	1 cut(s)	570
BstNSI	RCATGY	1 cut(s)	818
BstSFI	CTRYAG	1 cut(s)	780
BstUI	CGCG	1 cut(s)	486
BstV1I	GCAGC	1 cut(s)	798
BstX2I	RGATCY	1 cut(s)	426
BstYI	RGATCY	1 cut(s)	426
BsuRI	GGCC	2 cut(s)	492, 605
BtgI	CCRYGG	1 cut(s)	443
BtsCI	GGATG	2 cut(s)	48, 724
CaiI	CAGNNNCTG	1 cut(s)	523
CfoI	GCGC	2 cut(s)	8, 71
Cfr13I	GGNCC	3 cut(s)	537, 603, 838
CseI	GACGC	1 cut(s)	684
Csp6I	GTAC	2 cut(s)	347, 801
CspCI	CAANNNNNGTGG	2 cut(s)	432, 467
CviAII	CATG	2 cut(s)	494, 815
CviQI	GTAC	2 cut(s)	347, 801
DdeI	CTNAG	5 cut(s)	55, 159, 646, 884, 1011
DpnI	GATC	6 cut(s)	428, 435, 516, 554, 569, 882
DpnII	GATC	6 cut(s)	426, 433, 514, 552, 567, 880
DriI	GACNNNNNGTC	1 cut(s)	664
EaeI	YGGCCR	1 cut(s)	490
Eam1104I	CTCTTC	1 cut(s)	275
Eam1105I	GACNNNNNGTC	1 cut(s)	664
EarI	CTCTTC	1 cut(s)	275
Ecl136II	GAGCTC	2 cut(s)	529, 777
Eco24I	GRGCYC	2 cut(s)	531, 779
Eco32I	GATATC	1 cut(s)	46
Eco47I	GGWCC	2 cut(s)	537, 838
Eco53kI	GAGCTC	2 cut(s)	529, 777
EcoICRI	GAGCTC	2 cut(s)	529, 777
EcoO109I	RGGNCCY	1 cut(s)	838
EcoRV	GATATC	1 cut(s)	46
EcoT38I	GRGCYC	2 cut(s)	531, 779
Esp3I	CGTCTC	1 cut(s)	172
FaeI	CATG	2 cut(s)	497, 818
FaiI	YATR	4 cut(s)	495, 782, 816, 991
FaqI	GGGAC	2 cut(s)	590, 864
FatI	CATG	2 cut(s)	493, 814
FauI	CCCGC	1 cut(s)	143
FbaI	TGATCA	1 cut(s)	552
FblI	GTMKAC	2 cut(s)	618, 675
Fnu4HI	GCNGC	3 cut(s)	487, 490, 812
FokI	GGATG	2 cut(s)	35, 731
FriOI	GRGCYC	2 cut(s)	531, 779
Fsp4HI	GCNGC	3 cut(s)	487, 490, 812
FspBI	CTAG	1 cut(s)	642
GlaI	GCGC	2 cut(s)	7, 70
GluI	GCNGC	3 cut(s)	487, 490, 812
GsuI	CTGGAG	1 cut(s)	545
HaeII	RGCGCY	1 cut(s)	9
HaeIII	GGCC	2 cut(s)	492, 605
HgaI	GACGC	1 cut(s)	684
HhaI	GCGC	2 cut(s)	8, 71
Hin1I	GRCGYC	1 cut(s)	695
Hin1II	CATG	2 cut(s)	497, 818
Hin6I	GCGC	2 cut(s)	6, 69
HinP1I	GCGC	2 cut(s)	6, 69
HincII	GTYRAC	1 cut(s)	820
HindII	GTYRAC	1 cut(s)	820
HinfI	GANTC	5 cut(s)	38, 410, 460, 520, 979
HphI	GGTGA	8 cut(s)	15, 144, 265, 784, 841, 871, 946, 959
Hpy166II	GTNNAC	3 cut(s)	619, 676, 820
Hpy188I	TCNGA	6 cut(s)	43, 172, 415, 472, 519, 880
Hpy188III	TCNNGA	4 cut(s)	310, 524, 556, 590
Hpy8I	GTNNAC	3 cut(s)	619, 676, 820
Hpy99I	CGWCG	3 cut(s)	476, 670, 700
HpyAV	CCTTC	6 cut(s)	98, 709, 722, 763, 791, 852
HpyCH4III	ACNGT	5 cut(s)	447, 549, 805, 907, 995
HpyCH4IV	ACGT	1 cut(s)	345
HpyCH4V	TGCA	2 cut(s)	814, 989
HpyF3I	CTNAG	5 cut(s)	55, 159, 646, 884, 1011
HpySE526I	ACGT	1 cut(s)	345
Hsp92I	GRCGYC	1 cut(s)	695
Hsp92II	CATG	2 cut(s)	497, 818
HspAI	GCGC	2 cut(s)	6, 69
Ksp22I	TGATCA	1 cut(s)	552
Kzo9I	GATC	6 cut(s)	426, 433, 514, 552, 567, 880
LmnI	GCTCC	2 cut(s)	473, 526
LpnPI	CCDG	9 cut(s)	74, 79, 437, 509, 597, 619, 671, 772, 821
Lsp1109I	GCAGC	1 cut(s)	798
LweI	GCATC	1 cut(s)	962
MaeI	CTAG	1 cut(s)	642
MaeII	ACGT	1 cut(s)	345
MalI	GATC	6 cut(s)	428, 435, 516, 554, 569, 882
MbiI	CCGCTC	1 cut(s)	138
MboI	GATC	6 cut(s)	426, 433, 514, 552, 567, 880
MboII	GAAGA	3 cut(s)	262, 316, 778
MfeI	CAATTG	2 cut(s)	532, 680
MflI	RGATCY	1 cut(s)	426
MhlI	GDGCHC	3 cut(s)	513, 531, 779
MluCI	AATT	6 cut(s)	320, 402, 502, 532, 596, 680
MlyI	GAGTC	2 cut(s)	32, 404
MmeI	TCCRAC	1 cut(s)	495
MseI	TTAA	1 cut(s)	711
MunI	CAATTG	2 cut(s)	532, 680
MvnI	CGCG	1 cut(s)	486
NdeII	GATC	6 cut(s)	426, 433, 514, 552, 567, 880
NlaIII	CATG	2 cut(s)	497, 818
NlaIV	GGNNCC	1 cut(s)	840
NspI	RCATGY	1 cut(s)	818
NspV	TTCGAA	1 cut(s)	463
PfeI	GAWTC	3 cut(s)	460, 520, 979
PflFI	GACNNNGTC	1 cut(s)	476
PflMI	CCANNNNNTGG	1 cut(s)	685
PkrI	GCNGC	3 cut(s)	488, 491, 813
Ple19I	CGATCG	1 cut(s)	570
PleI	GAGTC	2 cut(s)	32, 404
PpsI	GAGTC	2 cut(s)	32, 404
Ppu21I	YACGTR	1 cut(s)	346
PpuMI	RGGWCCY	1 cut(s)	838
Psp124BI	GAGCTC	2 cut(s)	531, 779
Psp5II	RGGWCCY	1 cut(s)	838
PspN4I	GGNNCC	1 cut(s)	840
PspPI	GGNCC	3 cut(s)	537, 603, 838
PspPPI	RGGWCCY	1 cut(s)	838
PstNI	CAGNNNCTG	1 cut(s)	523
PsuI	RGATCY	1 cut(s)	426
PsyI	GACNNNGTC	1 cut(s)	476
PvuI	CGATCG	1 cut(s)	570
RsaI	GTAC	2 cut(s)	348, 802
RsaNI	GTAC	2 cut(s)	347, 801
SacI	GAGCTC	2 cut(s)	531, 779
SaqAI	TTAA	1 cut(s)	711
SatI	GCNGC	3 cut(s)	487, 490, 812
Sau3AI	GATC	6 cut(s)	426, 433, 514, 552, 567, 880
Sau96I	GGNCC	3 cut(s)	537, 603, 838
SchI	GAGTC	2 cut(s)	32, 404
SduI	GDGCHC	3 cut(s)	513, 531, 779
SfaNI	GCATC	1 cut(s)	962
SfcI	CTRYAG	1 cut(s)	780
SfuI	TTCGAA	1 cut(s)	463
SinI	GGWCC	2 cut(s)	537, 838
SmlI	CTYRAG	2 cut(s)	308, 451
SmoI	CTYRAG	2 cut(s)	308, 451
Sse9I	AATT	6 cut(s)	320, 402, 502, 532, 596, 680
SsiI	CCGC	5 cut(s)	52, 136, 486, 489, 827
SspMI	CTAG	1 cut(s)	642
SstI	GAGCTC	2 cut(s)	531, 779
TaaI	ACNGT	5 cut(s)	447, 549, 805, 907, 995
TaiI	ACGT	1 cut(s)	348
TaqI	TCGA	9 cut(s)	432, 463, 480, 513, 566, 630, 698, 752, 929
TasI	AATT	6 cut(s)	320, 402, 502, 532, 596, 680
TauI	GCSGC	2 cut(s)	489, 492
TfiI	GAWTC	3 cut(s)	460, 520, 979
Tru1I	TTAA	1 cut(s)	711
Tru9I	TTAA	1 cut(s)	711
TseI	GCWGC	1 cut(s)	811
TspDTI	ATGAA	1 cut(s)	834
Tth111I	GACNNNGTC	1 cut(s)	476
Van91I	CCANNNNNTGG	1 cut(s)	685
VpaK11BI	GGWCC	2 cut(s)	537, 838
XceI	RCATGY	1 cut(s)	818
XmiI	GTMKAC	2 cut(s)	618, 675
XspI	CTAG	1 cut(s)	642

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.