Rw4G020980

FANCI solenoid 1

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr4
Physical Location & Seq
Forward (+)
45168125 .. 45172261
4137 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw4G020980.1

Sequence Viewer

Length: 1869 bp
ATGGTTTCGATCGTAAGGGACTTTCCTGTTCTTGATAAATTGAGGGCCAGAGAGTTTGTAGACAAGGTGTTCGATGGAATGTCTAGCTTAGACTTACAAGACTTGCCGTCGCTTGTCTACCAATTGCTGGTTTTGGCGTCGAAAGGGTTTGTTAAGAAGGATGTGATTGAAGGGATTGTGATGTTTTTTGGGTCGAAAATGGGGAGGAAGAAGGCGAGCTCTATAGTCAGGCAAGTGGAAGGGACTGTTTTGCTGCATGTCAACTTTGCGGTGAAGCAGGACCCTTCGTTGGGACAAGAGGTGATGGGGCTTGTGAAGTCTGATCTTAGAGCTTTCAATCATTTTACTGTTGCTGTTTTGTTATCGGTTTCGAGGGTGAGGAGGTTTGGTGAGGCATCAATGGGGGCTTTGAAAATGGCGATTCTAACTGCATACCGTGATTACAAGTTTGCTAAAGAATGTAAATGGATACCAGATGACATGAAGGAAGAATATCTGCACAATGTCAAAGTGGTCGAGAAGGCCATGTTAAGAGCGGTTAATGAGAGCAACTATGGAAGGGAACACATTGTGCCTAGCATTTTGCAGTTTGCTTTTGTATTGCTAGAGTCAGTGGAAGAGGGAAACCATAGAGAGCTCTGCAATTTAAGTGGTTTGGTAGGCATTGAGGAGCTTGCTATTCAGATGCTAAAAGCTATATTTGTGGCCCATGATATGGCTAGAAATGAGATTATTGAGCAGTGTAAATTTCGGATCCTTTCTTTGAAGCCAGAGCAGAGCATGGTTATCATAAGACTTCTCAGTAATCTAGCTCAAAGTTATCCGTACCCCATGTTAGAACATGTTTCCCGGCTAAAGGAATTGTTGGATTACTTCACTTTCATGCATGGCAAGGTTGCTGCTCAACTTGTTACTGCTTTGTTGCCTCTCATCAAGTTCAGCCGTGATCTCAAGGATTACACTATTTTGGTAATGCGTAAGGCGATGTTTAGACGAGAAGATACAATTCGTCTTGCAGCAACCAATGCTGTTATTGATTTGATTCTGGCCGAAAAGCAATCCAAGAAGGATGATTTGTTGTCTTTTCAAGAGTCATCGAGCCAAGCCAGTAGCAGTCAGCAATCTGAGATACCCTACAATGTTGGGGGAGGCCTGTTTCAAGAGCTCAGTGGTCTATTGCAGAGATGTCTTTATCAACCGGCAAGTGTCAAAGAAGTCATGTATCATGGACTTGTGAAGCTTGTGTTGATGGACCCATCTAGTGGGGGGGCTGTCTTTGATTTTTTGTTGCCTCACTTCCTCCATTTTTTTAAAGAGCAGGATGCAGATGTTCAATTAGGAATTAGCTGCTGCATAAAATCAGAGAGTGGCAAAGCTTATGTTGAAGAGCCCTTAGATTGCCTTCTGTCTTGTGTTTCTTGGATGTTACTTCAACAACCAAATGGAAAAACTGAGAAAGCCTTGAATTCTTCATGGGCATGTTTGGGTTTCTCCCTTTCACAAGAAAACCAGGTAGGAAGAAATTCGTCTGCTGACTCATTCTACAGTTCTTTCTTGAAGATTCGGAAGTCTCTACGAAATCAGAATATTGAAGGCATCTTTGGTCAAACTCAGGATGGAGGCTCTTCATCTTTTGAAGAGAACAAAAGAAAATGCTCCGCTTTTGTTTTATCAGGAATTATTGAAGTACTCGTGAATGCTATTGCTACTGAGTTGGACAAAGCATCGGATAGAACGAAATTAGATCTTGAAAAGGAGCTTATTCAGTTTGTTGAGCTTCATCATTCACTCAATAAGGATACATGTTTCTCCAGCAAGAGTACTGCAGTAAGAAAAGGGAGTACTACACTCCTGCTCACGATATACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling

Protein Analysis

622

Amino Acids

69.87

Weight (kDa)

7.56

Isoelectric Point (pI)

46.43

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FANCI_S1 PF14675 11 - 92 1e-09 FANCI solenoid 1
FANCI_HD1 PF14679 96 - 177 9.6e-23 FANCI helical domain 1
FANCI_S2 PF14676 190 - 344 1.6e-49 FANCI solenoid 2
FANCI_HD2 PF14680 363 - 601 6.5e-54 FANCI helical domain 2
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 3 cut(s) 127, 715, 1262
AccBSI CCGCTC 1 cut(s) 536
AccI GTMKAC 2 cut(s) 60, 117
AciI CCGC 3 cut(s) 269, 536, 1659
AclWI GGATC 2 cut(s) 748, 761
AcoI YGGCCR 1 cut(s) 1047
AcsI RAATTY 3 cut(s) 746, 1465, 1522
AcyI GRCGYC 1 cut(s) 137
AdeI CACNNNGTG 1 cut(s) 571
AfaI GTAC 4 cut(s) 827, 1689, 1822, 1843
AfiI CCNNNNNNNGG 6 cut(s) 127, 289, 290, 715, 856, 1262
AflIII ACRYGT 2 cut(s) 841, 1802
AhdI GACNNNNNGTC 1 cut(s) 106
AjnI CCWGG 1 cut(s) 1509
AjuI GAANNNNNNNTTGG 2 cut(s) 1584, 1616
Alw21I GWGCWC 3 cut(s) 221, 639, 1167
Alw26I GTCTC 1 cut(s) 1575
AlwI GGATC 2 cut(s) 748, 761
AoxI GGCC 5 cut(s) 45, 522, 705, 1047, 1150
ApeKI GCWGC 5 cut(s) 253, 899, 1016, 1347, 1350
ApoI RAATTY 3 cut(s) 746, 1465, 1522
ArsI GACNNNNNNTTYG 2 cut(s) 53, 85
Asp700I GAANNNNTTC 1 cut(s) 1522
AspS9I GGNCC 4 cut(s) 45, 280, 706, 1252
AsuC2I CCSGG 1 cut(s) 850
AsuHPI GGTGA 4 cut(s) 283, 313, 388, 401
AvaII GGWCC 2 cut(s) 280, 1252
BamHI GGATCC 1 cut(s) 753
BanII GRGCYC 4 cut(s) 221, 639, 1167, 1392
BauI CACGAG 1 cut(s) 1691
Bbv12I GWGCWC 3 cut(s) 221, 639, 1167
BbvI GCAGC 5 cut(s) 240, 886, 1028, 1334, 1337
BccI CCATC 5 cut(s) 68, 298, 1243, 1264, 1610
BceAI ACGGC 2 cut(s) 91, 927
BciT130I CCWGG 1 cut(s) 1511
BciVI GTATCC 2 cut(s) 462, 1792
BcnI CCSGG 1 cut(s) 850
BcoDI GTCTC 1 cut(s) 1575
BfaI CTAG 6 cut(s) 84, 576, 605, 720, 809, 1260
BfmI CTRYAG 3 cut(s) 222, 1543, 1824
BfuI GTATCC 2 cut(s) 462, 1792
BglII AGATCT 1 cut(s) 1744
BisI GCNGC 5 cut(s) 254, 900, 1017, 1348, 1351
BlsI GCNGC 5 cut(s) 255, 901, 1018, 1349, 1352
BmcAI AGTACT 3 cut(s) 1689, 1822, 1843
Bme1390I CCNGG 2 cut(s) 850, 1511
Bme18I GGWCC 2 cut(s) 280, 1252
BmeRI GACNNNNNGTC 1 cut(s) 106
BmgT120I GGNCC 4 cut(s) 45, 280, 706, 1252
BmiI GGNNCC 3 cut(s) 282, 755, 1254
BmrFI CCNGG 2 cut(s) 850, 1511
BmsI GCATC 5 cut(s) 404, 675, 1312, 1605, 1733
BpmI CTGGAG 1 cut(s) 1795
BpuEI CTTGAG 1 cut(s) 935
BpuMI CCSGG 1 cut(s) 850
BsaHI GRCGYC 1 cut(s) 137
BsaXI ACNNNNNCTCC 2 cut(s) 373, 403
Bsc4I CCNNNNNNNGG 6 cut(s) 127, 289, 290, 715, 856, 1262
Bse118I RCCGGY 1 cut(s) 1198
Bse1I ACTGG 1 cut(s) 1107
BseBI CCWGG 1 cut(s) 1511
BseGI GGATG 5 cut(s) 166, 1075, 1327, 1428, 1621
BseLI CCNNNNNNNGG 6 cut(s) 127, 289, 290, 715, 856, 1262
BseMII CTCAG 6 cut(s) 814, 1116, 1180, 1443, 1625, 1701
BseNI ACTGG 1 cut(s) 1107
BseRI GAGGAG 2 cut(s) 394, 683
BseXI GCAGC 5 cut(s) 240, 886, 1028, 1334, 1337
BsgI GTGCAG 1 cut(s) 482
Bsh1285I CGRYCG 1 cut(s) 12
BshFI GGCC 5 cut(s) 47, 524, 707, 1049, 1152
BsiEI CGRYCG 1 cut(s) 12
BsiHKAI GWGCWC 3 cut(s) 221, 639, 1167
BsiSI CCGG 2 cut(s) 850, 1199
BslFI GGGAC 3 cut(s) 32, 256, 306
BslI CCNNNNNNNGG 6 cut(s) 127, 289, 290, 715, 856, 1262
BsmAI GTCTC 1 cut(s) 1575
BsmFI GGGAC 3 cut(s) 32, 256, 306
BsmI GAATGC 1 cut(s) 1702
BsnI GGCC 5 cut(s) 47, 524, 707, 1049, 1152
Bsp1286I GDGCHC 4 cut(s) 221, 639, 1167, 1392
Bsp143I GATC 5 cut(s) 9, 322, 753, 946, 1744
BspACI CCGC 3 cut(s) 269, 536, 1659
BspANI GGCC 5 cut(s) 47, 524, 707, 1049, 1152
BspCNI CTCAG 6 cut(s) 813, 1117, 1179, 1444, 1624, 1702
BspLI GGNNCC 3 cut(s) 282, 755, 1254
BspMAI CTGCAG 1 cut(s) 1828
BspPI GGATC 2 cut(s) 748, 761
BspQI GCTCTTC 2 cut(s) 1380, 1630
BsrBI CCGCTC 1 cut(s) 536
BsrFI RCCGGY 1 cut(s) 1198
BsrI ACTGG 1 cut(s) 1107
BssAI RCCGGY 1 cut(s) 1198
BssMI GATC 5 cut(s) 9, 322, 753, 946, 1744
BssNI GRCGYC 1 cut(s) 137
BssSI CACGAG 1 cut(s) 1691
Bst2BI CACGAG 1 cut(s) 1691
Bst2UI CCWGG 1 cut(s) 1511
Bst4CI ACNGT 4 cut(s) 247, 349, 437, 1547
Bst6I CTCTTC 4 cut(s) 612, 1380, 1630, 1632
BstACI GRCGYC 1 cut(s) 137
BstAPI GCANNNNNTGC 1 cut(s) 1025
BstC8I GCNNGC 2 cut(s) 217, 675
BstDEI CTNAG 9 cut(s) 88, 326, 800, 1125, 1166, 1393, 1452, 1611, 1710
BstF5I GGATG 5 cut(s) 166, 1075, 1327, 1428, 1621
BstKTI GATC 5 cut(s) 12, 325, 756, 949, 1747
BstMAI GTCTC 1 cut(s) 1575
BstMBI GATC 5 cut(s) 9, 322, 753, 946, 1744
BstMCI CGRYCG 1 cut(s) 12
BstMWI GCNNNNNNNGC 1 cut(s) 1025
BstNI CCWGG 1 cut(s) 1511
BstNSI RCATGY 4 cut(s) 260, 845, 1482, 1806
BstSCI CCNGG 2 cut(s) 848, 1509
BstSFI CTRYAG 3 cut(s) 222, 1543, 1824
BstV1I GCAGC 5 cut(s) 240, 886, 1028, 1334, 1337
BstX2I RGATCY 2 cut(s) 753, 1744
BstYI RGATCY 2 cut(s) 753, 1744
BsuI GTATCC 2 cut(s) 462, 1792
BsuRI GGCC 5 cut(s) 47, 524, 707, 1049, 1152
BtgZI GCGATG 1 cut(s) 998
BtsCI GGATG 5 cut(s) 166, 1075, 1327, 1428, 1621
BtsI GCAGTG 1 cut(s) 746
BtsIMutI CAGTG 3 cut(s) 618, 746, 1174
Cac8I GCNNGC 2 cut(s) 217, 675
Cfr10I RCCGGY 1 cut(s) 1198
Cfr13I GGNCC 4 cut(s) 45, 280, 706, 1252
CseI GACGC 1 cut(s) 126
CsiI ACCWGGT 1 cut(s) 1509
Csp6I GTAC 4 cut(s) 826, 1688, 1821, 1842
CspCI CAANNNNNGTGG 2 cut(s) 631, 666
CviQI GTAC 4 cut(s) 826, 1688, 1821, 1842
DdeI CTNAG 9 cut(s) 88, 326, 800, 1125, 1166, 1393, 1452, 1611, 1710
DpnI GATC 5 cut(s) 11, 324, 755, 948, 1746
DpnII GATC 5 cut(s) 9, 322, 753, 946, 1744
DraI TTTAAA 1 cut(s) 1312
DraIII CACNNNGTG 1 cut(s) 571
DriI GACNNNNNGTC 1 cut(s) 106
EaeI YGGCCR 1 cut(s) 1047
Eam1104I CTCTTC 4 cut(s) 612, 1380, 1630, 1632
Eam1105I GACNNNNNGTC 1 cut(s) 106
EarI CTCTTC 4 cut(s) 612, 1380, 1630, 1632
Ecl136II GAGCTC 3 cut(s) 219, 637, 1165
Eco147I AGGCCT 1 cut(s) 1152
Eco24I GRGCYC 4 cut(s) 221, 639, 1167, 1392
Eco47I GGWCC 2 cut(s) 280, 1252
Eco53kI GAGCTC 3 cut(s) 219, 637, 1165
EcoICRI GAGCTC 3 cut(s) 219, 637, 1165
EcoO109I RGGNCCY 1 cut(s) 280
EcoRI GAATTC 1 cut(s) 1465
EcoRII CCWGG 1 cut(s) 1509
EcoT22I ATGCAT 1 cut(s) 888
EcoT38I GRGCYC 4 cut(s) 221, 639, 1167, 1392
FaqI GGGAC 3 cut(s) 32, 256, 306
FblI GTMKAC 2 cut(s) 60, 117
Fnu4HI GCNGC 5 cut(s) 254, 900, 1017, 1348, 1351
FokI GGATG 5 cut(s) 173, 1082, 1334, 1435, 1628
FriOI GRGCYC 4 cut(s) 221, 639, 1167, 1392
Fsp4HI GCNGC 5 cut(s) 254, 900, 1017, 1348, 1351
FspBI CTAG 6 cut(s) 84, 576, 605, 720, 809, 1260
GluI GCNGC 5 cut(s) 254, 900, 1017, 1348, 1351
GsuI CTGGAG 1 cut(s) 1795
HaeIII GGCC 5 cut(s) 47, 524, 707, 1049, 1152
HapII CCGG 2 cut(s) 850, 1199
HgaI GACGC 1 cut(s) 126
Hin1I GRCGYC 1 cut(s) 137
HincII GTYRAC 1 cut(s) 262
HindII GTYRAC 1 cut(s) 262
HindIII AAGCTT 2 cut(s) 1238, 1374
HinfI GANTC 6 cut(s) 421, 608, 1042, 1091, 1535, 1561
HpaII CCGG 2 cut(s) 850, 1199
HphI GGTGA 4 cut(s) 283, 313, 388, 401
Hpy166II GTNNAC 3 cut(s) 61, 118, 262
Hpy188I TCNGA 8 cut(s) 322, 684, 753, 1126, 1363, 1566, 1584, 1729
Hpy8I GTNNAC 3 cut(s) 61, 118, 262
Hpy99I CGWCG 2 cut(s) 112, 142
HpyCH4III ACNGT 4 cut(s) 247, 349, 437, 1547
HpyF10VI GCNNNNNNNGC 1 cut(s) 1025
HpyF3I CTNAG 9 cut(s) 88, 326, 800, 1125, 1166, 1393, 1452, 1611, 1710
Hsp92I GRCGYC 1 cut(s) 137
Kzo9I GATC 5 cut(s) 9, 322, 753, 946, 1744
LguI GCTCTTC 2 cut(s) 1380, 1630
LmnI GCTCC 3 cut(s) 670, 1661, 1756
Lsp1109I GCAGC 5 cut(s) 240, 886, 1028, 1334, 1337
LweI GCATC 5 cut(s) 404, 675, 1312, 1605, 1733
MabI ACCWGGT 1 cut(s) 1509
MaeI CTAG 6 cut(s) 84, 576, 605, 720, 809, 1260
MaeIII GTNAC 2 cut(s) 910, 1425
MalI GATC 5 cut(s) 11, 324, 755, 948, 1746
MbiI CCGCTC 1 cut(s) 536
MboI GATC 5 cut(s) 9, 322, 753, 946, 1744
MfeI CAATTG 1 cut(s) 122
MflI RGATCY 2 cut(s) 753, 1744
MhlI GDGCHC 4 cut(s) 221, 639, 1167, 1392
MlyI GAGTC 3 cut(s) 617, 1100, 1529
MmeI TCCRAC 2 cut(s) 846, 1695
Mph1103I ATGCAT 1 cut(s) 888
MroXI GAANNNNTTC 1 cut(s) 1522
MseI TTAA 5 cut(s) 153, 530, 540, 647, 1311
MslI CAYNNNNRTG 2 cut(s) 881, 1477
MspI CCGG 2 cut(s) 850, 1199
MspR9I CCNGG 2 cut(s) 850, 1511
MunI CAATTG 1 cut(s) 122
Mva1269I GAATGC 1 cut(s) 1702
MvaI CCWGG 1 cut(s) 1511
MwoI GCNNNNNNNGC 1 cut(s) 1025
NciI CCSGG 1 cut(s) 850
NdeII GATC 5 cut(s) 9, 322, 753, 946, 1744
NlaIV GGNNCC 3 cut(s) 282, 755, 1254
NsiI ATGCAT 1 cut(s) 888
NspI RCATGY 4 cut(s) 260, 845, 1482, 1806
PceI AGGCCT 1 cut(s) 1152
PciI ACATGT 2 cut(s) 841, 1802
PciSI GCTCTTC 2 cut(s) 1380, 1630
PcsI WCGNNNNNNNCGW 1 cut(s) 1733
PctI GAATGC 1 cut(s) 1702
PdmI GAANNNNTTC 1 cut(s) 1522
PfeI GAWTC 3 cut(s) 421, 1042, 1561
PflMI CCANNNNNTGG 3 cut(s) 127, 715, 1262
PkrI GCNGC 5 cut(s) 255, 901, 1018, 1349, 1352
Ple19I CGATCG 1 cut(s) 12
PleI GAGTC 3 cut(s) 616, 1099, 1529
PpsI GAGTC 3 cut(s) 616, 1099, 1529
PpuMI RGGWCCY 1 cut(s) 280
PscI ACATGT 2 cut(s) 841, 1802
Psp124BI GAGCTC 3 cut(s) 221, 639, 1167
Psp5II RGGWCCY 1 cut(s) 280
Psp6I CCWGG 1 cut(s) 1509
PspGI CCWGG 1 cut(s) 1509
PspN4I GGNNCC 3 cut(s) 282, 755, 1254
PspPI GGNCC 4 cut(s) 45, 280, 706, 1252
PspPPI RGGWCCY 1 cut(s) 280
PstI CTGCAG 1 cut(s) 1828
PsuI RGATCY 2 cut(s) 753, 1744
PvuI CGATCG 1 cut(s) 12
RsaI GTAC 4 cut(s) 827, 1689, 1822, 1843
RsaNI GTAC 4 cut(s) 826, 1688, 1821, 1842
RseI CAYNNNNRTG 2 cut(s) 881, 1477
SacI GAGCTC 3 cut(s) 221, 639, 1167
SapI GCTCTTC 2 cut(s) 1380, 1630
SaqAI TTAA 5 cut(s) 153, 530, 540, 647, 1311
SatI GCNGC 5 cut(s) 254, 900, 1017, 1348, 1351
Sau3AI GATC 5 cut(s) 9, 322, 753, 946, 1744
Sau96I GGNCC 4 cut(s) 45, 280, 706, 1252
ScaI AGTACT 3 cut(s) 1689, 1822, 1843
SchI GAGTC 3 cut(s) 617, 1100, 1529
ScrFI CCNGG 2 cut(s) 850, 1511
SduI GDGCHC 4 cut(s) 221, 639, 1167, 1392
SexAI ACCWGGT 1 cut(s) 1509
SfaNI GCATC 5 cut(s) 404, 675, 1312, 1605, 1733
SfcI CTRYAG 3 cut(s) 222, 1543, 1824
SinI GGWCC 2 cut(s) 280, 1252
SmiMI CAYNNNNRTG 2 cut(s) 881, 1477
SmlI CTYRAG 1 cut(s) 950
SmoI CTYRAG 1 cut(s) 950
SseBI AGGCCT 1 cut(s) 1152
SsiI CCGC 3 cut(s) 269, 536, 1659
SspI AATATT 1 cut(s) 1588
SspMI CTAG 6 cut(s) 84, 576, 605, 720, 809, 1260
SstI GAGCTC 3 cut(s) 221, 639, 1167
StuI AGGCCT 1 cut(s) 1152
StyD4I CCNGG 2 cut(s) 848, 1509
TaaI ACNGT 4 cut(s) 247, 349, 437, 1547
TaqI TCGA 7 cut(s) 8, 72, 140, 194, 371, 516, 1097
TatI WGTACW 3 cut(s) 1687, 1820, 1841
TfiI GAWTC 3 cut(s) 421, 1042, 1561
Tru1I TTAA 5 cut(s) 153, 530, 540, 647, 1311
Tru9I TTAA 5 cut(s) 153, 530, 540, 647, 1311
TscAI CASTG 3 cut(s) 618, 746, 1174
TseI GCWGC 5 cut(s) 253, 899, 1016, 1347, 1350
TspDTI ATGAA 5 cut(s) 497, 871, 1461, 1617, 1769
TspGWI ACGGA 1 cut(s) 813
TspRI CASTG 3 cut(s) 618, 746, 1174
Van91I CCANNNNNTGG 3 cut(s) 127, 715, 1262
VpaK11BI GGWCC 2 cut(s) 280, 1252
XapI RAATTY 3 cut(s) 746, 1465, 1522
XceI RCATGY 4 cut(s) 260, 845, 1482, 1806
XmiI GTMKAC 2 cut(s) 60, 117
XmnI GAANNNNTTC 1 cut(s) 1522
XspI CTAG 6 cut(s) 84, 576, 605, 720, 809, 1260
ZrmI AGTACT 3 cut(s) 1689, 1822, 1843
Zsp2I ATGCAT 1 cut(s) 888
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.