Rorug04G0183500

FANCI solenoid 1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000004
OG0009455
Physical Location & Seq
Reverse (-)
32047205 .. 32048041
837 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug04G0183500.1

Sequence Viewer

Length: 771 bp
ATGGCGGGCCGGGACGGGCCGGGCTTTATTGTAAATCGAAGGATCCAAGCCCGTCCATATAAAGCGAGTCTTGCGGGCTTTTTCGGCTTTGAAAATTCATTGGATAATGATCAAATACAACCAAAGGGGAGGGGCACGGCAAAGGGGTCTCCGAAACCTTCGGAGCGACCCGGTACAGCAAAAATTCATTTTCGTGATGGCGGCGGCGAGCCTCGTGCTCTCCAGTCCATGCAGAGGCGAGATGACGGCGACGTGGGATTGAAGAGTCTGTGGTCTCTTCTGCAACGACGTCAGGATCTCGACCAAGATTCTCGAAGGCTCCGGTTGATGTGTTTCTCAACTGAGGGTGTTTTTTTTGCCGTGGGTCGGCGGATCGAATCGGAACTGCAGCTTTGGTGTCGGCGATCCGGCCCTGTGTCGTGGTGTCGGAATTGGTTGGTCGATGTCATATCTGGGCGGATGAAGGCGGCAGGAGGGTTTGCCGTGACGCCGGCGGTGATTGCACAGGACCTGGAGTTGGCTGGGATTGTTTTACCGGTCCTGGAGGTGACTGCAGTGAAGGGCTGCGAGCAAGAAGAGAGATTGGAAGAACCGGCAGGGAACCTTAGGTTTGACCTAGGGCTGACCACTGGTTTGACTGGGATGGATACTGGGCCGCTGACTTTGATTGGGCCTGCGGGTGTGGCTGGATTTGGGTCTGATCTGCATGGGCCGCTGATTGGGCCTGTGTATAGGGGACTTAATTTGGGCTTTATACTGCAGAATCTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03460 map03460
Pfam Domains
Protein Families
FANCI_HD1 FANCI_HD2 FANCI_S1 FANCI_S2 FANCI_S4

Protein Analysis

256

Amino Acids

27.8

Weight (kDa)

9.02

Isoelectric Point (pI)

53.4

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 292
AclWI GGATC 5 cut(s) 37, 50, 303, 380, 399
AcsI RAATTY 2 cut(s) 94, 183
AcyI GRCGYC 2 cut(s) 289, 488
AfaI GTAC 1 cut(s) 175
AfiI CCNNNNNNNGG 4 cut(s) 234, 366, 517, 719
AgeI ACCGGT 1 cut(s) 535
AgsI TTSAA 2 cut(s) 92, 262
AjiI CACGTC 1 cut(s) 253
AjnI CCWGG 2 cut(s) 510, 540
AluBI AGCT 1 cut(s) 391
AluI AGCT 1 cut(s) 391
Alw21I GWGCWC 1 cut(s) 220
Alw26I GTCTC 2 cut(s) 153, 279
AlwI GGATC 5 cut(s) 37, 50, 303, 380, 399
AlwNI CAGNNNCTG 1 cut(s) 511
AoxI GGCC 7 cut(s) 7, 17, 409, 653, 671, 710, 722
ApeKI GCWGC 2 cut(s) 388, 564
ApoI RAATTY 2 cut(s) 94, 183
ArsI GACNNNNNNTTYG 2 cut(s) 616, 648
AsiGI ACCGGT 1 cut(s) 535
AspA2I CCTAGG 1 cut(s) 616
AspS9I GGNCC 9 cut(s) 7, 17, 410, 508, 538, 653, 671, 710, 722
AsuC2I CCSGG 3 cut(s) 11, 21, 171
AsuHPI GGTGA 2 cut(s) 508, 559
AvaII GGWCC 2 cut(s) 508, 538
AvrII CCTAGG 1 cut(s) 616
AxyI CCTNAGG 1 cut(s) 605
BaeGI GKGCMC 1 cut(s) 137
BamHI GGATCC 1 cut(s) 42
BauI CACGAG 1 cut(s) 213
Bbv12I GWGCWC 1 cut(s) 220
BbvI GCAGC 2 cut(s) 400, 551
BccI CCATC 2 cut(s) 191, 637
BceAI ACGGC 4 cut(s) 153, 262, 344, 467
BcgI CGANNNNNNTGC 2 cut(s) 197, 231
BciT130I CCWGG 2 cut(s) 512, 542
BciVI GTATCC 1 cut(s) 640
BclI TGATCA 1 cut(s) 109
BcnI CCSGG 3 cut(s) 11, 21, 171
BcoDI GTCTC 2 cut(s) 153, 279
BfaI CTAG 2 cut(s) 617, 769
BfmI CTRYAG 3 cut(s) 386, 552, 758
BfuI GTATCC 1 cut(s) 640
BisI GCNGC 7 cut(s) 202, 205, 389, 468, 565, 656, 713
BlnI CCTAGG 1 cut(s) 616
BlsI GCNGC 7 cut(s) 203, 206, 390, 469, 566, 657, 714
Bme1390I CCNGG 5 cut(s) 11, 21, 171, 512, 542
Bme18I GGWCC 2 cut(s) 508, 538
BmgBI CACGTC 1 cut(s) 253
BmgT120I GGNCC 9 cut(s) 7, 17, 410, 508, 538, 653, 671, 710, 722
BmiI GGNNCC 3 cut(s) 44, 320, 602
BmrFI CCNGG 5 cut(s) 11, 21, 171, 512, 542
BmrI ACTGGG 2 cut(s) 648, 660
BmuI ACTGGG 2 cut(s) 648, 660
BpmI CTGGAG 3 cut(s) 206, 533, 563
BpuMI CCSGG 3 cut(s) 11, 21, 171
BsaBI GATNNNNATC 1 cut(s) 108
BsaHI GRCGYC 2 cut(s) 289, 488
BsaI GGTCTC 2 cut(s) 153, 279
BsaJI CCNNGG 2 cut(s) 360, 616
BsaWI WCCGGW 2 cut(s) 321, 535
Bsc4I CCNNNNNNNGG 4 cut(s) 234, 366, 517, 719
Bse118I RCCGGY 3 cut(s) 490, 535, 592
Bse1I ACTGG 4 cut(s) 223, 634, 643, 655
Bse21I CCTNAGG 1 cut(s) 605
Bse8I GATNNNNATC 1 cut(s) 108
BseBI CCWGG 2 cut(s) 512, 542
BseDI CCNNGG 2 cut(s) 360, 616
BseGI GGATG 2 cut(s) 465, 648
BseJI GATNNNNATC 1 cut(s) 108
BseLI CCNNNNNNNGG 4 cut(s) 234, 366, 517, 719
BseMII CTCAG 1 cut(s) 333
BseNI ACTGG 4 cut(s) 223, 634, 643, 655
BseSI GKGCMC 1 cut(s) 137
BseXI GCAGC 2 cut(s) 400, 551
BseYI CCCAGC 1 cut(s) 521
BshFI GGCC 7 cut(s) 9, 19, 411, 655, 673, 712, 724
BshTI ACCGGT 1 cut(s) 535
BsiHKAI GWGCWC 1 cut(s) 220
BsiSI CCGG 8 cut(s) 10, 20, 171, 322, 408, 491, 536, 593
BslFI GGGAC 2 cut(s) 26, 750
BslI CCNNNNNNNGG 4 cut(s) 234, 366, 517, 719
BsmAI GTCTC 2 cut(s) 153, 279
BsmFI GGGAC 2 cut(s) 26, 750
BsnI GGCC 7 cut(s) 9, 19, 411, 655, 673, 712, 724
Bso31I GGTCTC 2 cut(s) 153, 279
Bsp1286I GDGCHC 2 cut(s) 137, 220
Bsp143I GATC 6 cut(s) 42, 109, 295, 372, 404, 700
BspANI GGCC 7 cut(s) 9, 19, 411, 655, 673, 712, 724
BspCNI CTCAG 1 cut(s) 334
BspLI GGNNCC 3 cut(s) 44, 320, 602
BspMAI CTGCAG 3 cut(s) 390, 556, 762
BspPI GGATC 5 cut(s) 37, 50, 303, 380, 399
BspTNI GGTCTC 2 cut(s) 153, 279
BsrFI RCCGGY 3 cut(s) 490, 535, 592
BsrI ACTGG 4 cut(s) 223, 634, 643, 655
BssAI RCCGGY 3 cut(s) 490, 535, 592
BssECI CCNNGG 2 cut(s) 360, 616
BssMI GATC 6 cut(s) 42, 109, 295, 372, 404, 700
BssNI GRCGYC 2 cut(s) 289, 488
BssSI CACGAG 1 cut(s) 213
BssT1I CCWWGG 1 cut(s) 616
Bst2BI CACGAG 1 cut(s) 213
Bst2UI CCWGG 2 cut(s) 512, 542
Bst6I CTCTTC 3 cut(s) 257, 282, 570
BstACI GRCGYC 2 cut(s) 289, 488
BstC8I GCNNGC 6 cut(s) 7, 76, 209, 492, 569, 675
BstDEI CTNAG 2 cut(s) 342, 605
BstDSI CCRYGG 1 cut(s) 360
BstF5I GGATG 2 cut(s) 465, 648
BstKTI GATC 6 cut(s) 45, 112, 298, 375, 407, 703
BstMAI GTCTC 2 cut(s) 153, 279
BstMBI GATC 6 cut(s) 42, 109, 295, 372, 404, 700
BstMWI GCNNNNNNNGC 6 cut(s) 71, 84, 500, 683, 712, 721
BstNI CCWGG 2 cut(s) 512, 542
BstSCI CCNGG 5 cut(s) 9, 19, 169, 510, 540
BstSFI CTRYAG 3 cut(s) 386, 552, 758
BstSLI GKGCMC 1 cut(s) 137
BstV1I GCAGC 2 cut(s) 400, 551
BstX2I RGATCY 2 cut(s) 42, 295
BstYI RGATCY 2 cut(s) 42, 295
Bsu36I CCTNAGG 1 cut(s) 605
BsuI GTATCC 1 cut(s) 640
BsuRI GGCC 7 cut(s) 9, 19, 411, 655, 673, 712, 724
BtgI CCRYGG 1 cut(s) 360
BtrI CACGTC 1 cut(s) 253
BtsCI GGATG 2 cut(s) 465, 648
BtsI GCAGTG 1 cut(s) 561
BtsIMutI CAGTG 2 cut(s) 561, 627
Cac8I GCNNGC 6 cut(s) 7, 76, 209, 492, 569, 675
CaiI CAGNNNCTG 1 cut(s) 511
Cfr10I RCCGGY 3 cut(s) 490, 535, 592
Cfr13I GGNCC 9 cut(s) 7, 17, 410, 508, 538, 653, 671, 710, 722
CseI GACGC 1 cut(s) 496
Csp6I GTAC 1 cut(s) 174
CspAI ACCGGT 1 cut(s) 535
CviAII CATG 2 cut(s) 229, 707
CviQI GTAC 1 cut(s) 174
DdeI CTNAG 2 cut(s) 342, 605
DpnI GATC 6 cut(s) 44, 111, 297, 374, 406, 702
DpnII GATC 6 cut(s) 42, 109, 295, 372, 404, 700
Eam1104I CTCTTC 3 cut(s) 257, 282, 570
EarI CTCTTC 3 cut(s) 257, 282, 570
EciI GGCGGA 2 cut(s) 385, 472
Eco130I CCWWGG 1 cut(s) 616
Eco31I GGTCTC 2 cut(s) 153, 279
Eco47I GGWCC 2 cut(s) 508, 538
Eco81I CCTNAGG 1 cut(s) 605
EcoO109I RGGNCCY 1 cut(s) 508
EcoRII CCWGG 2 cut(s) 510, 540
EcoT14I CCWWGG 1 cut(s) 616
ErhI CCWWGG 1 cut(s) 616
FaeI CATG 2 cut(s) 232, 710
FaiI YATR 7 cut(s) 58, 60, 230, 449, 708, 732, 755
FalI AAGNNNNNCTT 2 cut(s) 54, 86
FaqI GGGAC 2 cut(s) 26, 750
FatI CATG 2 cut(s) 228, 706
FauI CCCGC 2 cut(s) 67, 670
FbaI TGATCA 1 cut(s) 109
Fnu4HI GCNGC 7 cut(s) 202, 205, 389, 468, 565, 656, 713
FokI GGATG 2 cut(s) 472, 655
Fsp4HI GCNGC 7 cut(s) 202, 205, 389, 468, 565, 656, 713
FspBI CTAG 2 cut(s) 617, 769
GluI GCNGC 7 cut(s) 202, 205, 389, 468, 565, 656, 713
GsaI CCCAGC 1 cut(s) 525
GsuI CTGGAG 3 cut(s) 206, 533, 563
HaeIII GGCC 7 cut(s) 9, 19, 411, 655, 673, 712, 724
HapII CCGG 8 cut(s) 10, 20, 171, 322, 408, 491, 536, 593
HgaI GACGC 1 cut(s) 496
Hin1I GRCGYC 2 cut(s) 289, 488
Hin1II CATG 2 cut(s) 232, 710
HinfI GANTC 5 cut(s) 67, 265, 308, 377, 763
HpaII CCGG 8 cut(s) 10, 20, 171, 322, 408, 491, 536, 593
HphI GGTGA 2 cut(s) 508, 559
Hpy188I TCNGA 5 cut(s) 153, 163, 382, 429, 700
Hpy188III TCNNGA 4 cut(s) 194, 293, 299, 312
Hpy99I CGWCG 2 cut(s) 254, 291
HpyAV CCTTC 5 cut(s) 33, 168, 309, 457, 553
HpyCH4IV ACGT 2 cut(s) 252, 289
HpyCH4V TGCA 7 cut(s) 232, 283, 388, 503, 554, 706, 760
HpyF10VI GCNNNNNNNGC 6 cut(s) 71, 84, 500, 683, 712, 721
HpyF3I CTNAG 2 cut(s) 342, 605
HpySE526I ACGT 2 cut(s) 252, 289
Hsp92I GRCGYC 2 cut(s) 289, 488
Hsp92II CATG 2 cut(s) 232, 710
KroI GCCGGC 1 cut(s) 490
KroNI GCCGGC 1 cut(s) 492
Ksp22I TGATCA 1 cut(s) 109
Kzo9I GATC 6 cut(s) 42, 109, 295, 372, 404, 700
LmnI GCTCC 2 cut(s) 163, 324
Lsp1109I GCAGC 2 cut(s) 400, 551
MaeI CTAG 2 cut(s) 617, 769
MaeII ACGT 2 cut(s) 252, 289
MaeIII GTNAC 2 cut(s) 484, 547
MalI GATC 6 cut(s) 44, 111, 297, 374, 406, 702
MboI GATC 6 cut(s) 42, 109, 295, 372, 404, 700
MboII GAAGA 4 cut(s) 269, 274, 587, 599
MflI RGATCY 2 cut(s) 42, 295
MhlI GDGCHC 2 cut(s) 137, 220
MluCI AATT 4 cut(s) 94, 183, 430, 742
MlyI GAGTC 2 cut(s) 76, 274
MmeI TCCRAC 1 cut(s) 407
MnlI CCTC 6 cut(s) 123, 222, 228, 337, 467, 538
MreI CGCCGGCG 1 cut(s) 490
MroNI GCCGGC 1 cut(s) 490
MseI TTAA 1 cut(s) 741
MslI CAYNNNNRTG 1 cut(s) 192
MspA1I CMGCKG 2 cut(s) 658, 715
MspI CCGG 8 cut(s) 10, 20, 171, 322, 408, 491, 536, 593
MspR9I CCNGG 5 cut(s) 11, 21, 171, 512, 542
MvaI CCWGG 2 cut(s) 512, 542
MwoI GCNNNNNNNGC 6 cut(s) 71, 84, 500, 683, 712, 721
NaeI GCCGGC 1 cut(s) 492
NciI CCSGG 3 cut(s) 11, 21, 171
NdeII GATC 6 cut(s) 42, 109, 295, 372, 404, 700
NgoMIV GCCGGC 1 cut(s) 490
NlaIII CATG 2 cut(s) 232, 710
NlaIV GGNNCC 3 cut(s) 44, 320, 602
NmuCI GTSAC 2 cut(s) 484, 547
PdiI GCCGGC 1 cut(s) 492
PfeI GAWTC 3 cut(s) 308, 377, 763
PfoI TCCNGGA 1 cut(s) 540
PinAI ACCGGT 1 cut(s) 535
PkrI GCNGC 7 cut(s) 203, 206, 390, 469, 566, 657, 714
PleI GAGTC 2 cut(s) 75, 273
PpsI GAGTC 2 cut(s) 75, 273
PpuMI RGGWCCY 1 cut(s) 508
Psp5II RGGWCCY 1 cut(s) 508
Psp6I CCWGG 2 cut(s) 510, 540
PspFI CCCAGC 1 cut(s) 521
PspGI CCWGG 2 cut(s) 510, 540
PspN4I GGNNCC 3 cut(s) 44, 320, 602
PspPI GGNCC 9 cut(s) 7, 17, 410, 508, 538, 653, 671, 710, 722
PspPPI RGGWCCY 1 cut(s) 508
PstI CTGCAG 3 cut(s) 390, 556, 762
PstNI CAGNNNCTG 1 cut(s) 511
PsuI RGATCY 2 cut(s) 42, 295
RsaI GTAC 1 cut(s) 175
RsaNI GTAC 1 cut(s) 174
RseI CAYNNNNRTG 1 cut(s) 192
SaqAI TTAA 1 cut(s) 741
SatI GCNGC 7 cut(s) 202, 205, 389, 468, 565, 656, 713
Sau3AI GATC 6 cut(s) 42, 109, 295, 372, 404, 700
Sau96I GGNCC 9 cut(s) 7, 17, 410, 508, 538, 653, 671, 710, 722
SchI GAGTC 2 cut(s) 76, 274
ScrFI CCNGG 5 cut(s) 11, 21, 171, 512, 542
SduI GDGCHC 2 cut(s) 137, 220
SetI ASST 9 cut(s) 160, 255, 292, 393, 513, 549, 606, 611, 618
SfcI CTRYAG 3 cut(s) 386, 552, 758
SgrAI CRCCGGYG 1 cut(s) 490
SinI GGWCC 2 cut(s) 508, 538
SmiMI CAYNNNNRTG 1 cut(s) 192
Sse9I AATT 4 cut(s) 94, 183, 430, 742
SspMI CTAG 2 cut(s) 617, 769
StyD4I CCNGG 5 cut(s) 9, 19, 169, 510, 540
StyI CCWWGG 1 cut(s) 616
TaiI ACGT 2 cut(s) 255, 292
TaqI TCGA 5 cut(s) 37, 300, 313, 375, 441
TasI AATT 4 cut(s) 94, 183, 430, 742
TauI GCSGC 5 cut(s) 204, 207, 470, 658, 715
TfiI GAWTC 3 cut(s) 308, 377, 763
Tru1I TTAA 1 cut(s) 741
Tru9I TTAA 1 cut(s) 741
TscAI CASTG 2 cut(s) 561, 634
TseFI GTSAC 2 cut(s) 484, 547
TseI GCWGC 2 cut(s) 388, 564
Tsp45I GTSAC 2 cut(s) 484, 547
TspDTI ATGAA 3 cut(s) 87, 176, 476
TspRI CASTG 2 cut(s) 561, 634
VpaK11BI GGWCC 2 cut(s) 508, 538
XapI RAATTY 2 cut(s) 94, 183
XmaJI CCTAGG 1 cut(s) 616
XspI CTAG 2 cut(s) 617, 769
ZraI GACGTC 1 cut(s) 290
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.