Rmu_sc0034747.1_g000001

Serine threonine-protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0034747.1
OG0001303
Physical Location & Seq
Forward (+)
1 .. 1272
1272 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0034747.1_g000001.1.cds

Sequence Viewer

Length: 677 bp
gagtcgatgattttgagttgctgactatgattggcaagggtgcatttggtgaggttcgtgtctgcagggaaaagaccacaggttctgtatatgccatgaaaaagcttaagaaatcagaaatgcttcgtagaggccaggttgagcatgtaaaagctgaaaggaatctgcttgctgaggtggacagcaattgcattgtcaagctctattgttcttttcaagacgatgactatctttatcttataatggaatacttacctggaggagatatgatgactttacttatgagaaaggatattttgaccgaagatgaggctagattttatgtcgctgaaacagttttggctattgagtctatccataaacaccattatattcatagggatattaagcctgataatttactactcgatagatatggacacttgagactgtcagattttggattatgcaaacctttagactgcagtacaattcatgaagacttttcaataaataatgccaatggttctggacccaatgatgaacgtccggcagctccaaaacgcacacaacaagagcaactgcaacattggcagaagaataggagaatgcttgcttattcaactgttggtacacctgattatattgctccagaagttctattgaaaaaaggctatggaatggaatgtgattggtga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Pkinase Pkinase_C

Protein Analysis

224

Amino Acids

25.85

Weight (kDa)

5.93

Isoelectric Point (pI)

33.03

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 241
AfaI GTAC 2 cut(s) 468, 612
AflII CTTAAG 1 cut(s) 106
AgsI TTSAA 4 cut(s) 217, 488, 602, 645
AjnI CCWGG 2 cut(s) 134, 255
AluBI AGCT 4 cut(s) 105, 154, 201, 535
AluI AGCT 4 cut(s) 105, 154, 201, 535
Alw26I GTCTC 1 cut(s) 420
AlwNI CAGNNNCTG 1 cut(s) 85
AoxI GGCC 1 cut(s) 132
ApeKI GCWGC 1 cut(s) 532
Asp700I GAANNNNTTC 1 cut(s) 122
AspS9I GGNCC 1 cut(s) 511
AsuHPI GGTGA 1 cut(s) 61
AvaII GGWCC 1 cut(s) 511
BbsI GAAGAC 1 cut(s) 485
BbvCI CCTCAGC 1 cut(s) 173
BbvI GCAGC 1 cut(s) 544
BciT130I CCWGG 2 cut(s) 136, 257
BcoDI GTCTC 1 cut(s) 420
BfaI CTAG 1 cut(s) 314
BfmI CTRYAG 2 cut(s) 63, 462
BfrI CTTAAG 1 cut(s) 106
BisI GCNGC 1 cut(s) 533
BlsI GCNGC 1 cut(s) 534
Bme1390I CCNGG 2 cut(s) 136, 257
Bme18I GGWCC 1 cut(s) 511
BmgT120I GGNCC 1 cut(s) 511
BmiI GGNNCC 1 cut(s) 513
BmrFI CCNGG 2 cut(s) 136, 257
BpiI GAAGAC 1 cut(s) 485
BpmI CTGGAG 2 cut(s) 278, 614
Bpu10I CCTNAGC 1 cut(s) 173
BpuEI CTTGAG 1 cut(s) 444
BsaBI GATNNNNATC 1 cut(s) 227
Bse8I GATNNNNATC 1 cut(s) 227
BseBI CCWGG 2 cut(s) 136, 257
BseJI GATNNNNATC 1 cut(s) 227
BseMII CTCAG 1 cut(s) 164
BseRI GAGGAG 1 cut(s) 275
BseXI GCAGC 1 cut(s) 544
BshFI GGCC 1 cut(s) 134
BsiSI CCGG 1 cut(s) 529
BsmAI GTCTC 1 cut(s) 420
BsmI GAATGC 1 cut(s) 593
BsnI GGCC 1 cut(s) 134
BspANI GGCC 1 cut(s) 134
BspCNI CTCAG 1 cut(s) 165
BspHI TCATGA 1 cut(s) 474
BspLI GGNNCC 1 cut(s) 513
BspMAI CTGCAG 2 cut(s) 67, 466
BspTI CTTAAG 1 cut(s) 106
Bst2UI CCWGG 2 cut(s) 136, 257
Bst4CI ACNGT 3 cut(s) 336, 431, 606
BstAFI CTTAAG 1 cut(s) 106
BstC8I GCNNGC 2 cut(s) 170, 593
BstDEI CTNAG 1 cut(s) 173
BstMAI GTCTC 1 cut(s) 420
BstMWI GCNNNNNNNGC 1 cut(s) 570
BstNI CCWGG 2 cut(s) 136, 257
BstNSI RCATGY 1 cut(s) 148
BstSCI CCNGG 2 cut(s) 134, 255
BstSFI CTRYAG 2 cut(s) 63, 462
BstV1I GCAGC 1 cut(s) 544
BstV2I GAAGAC 1 cut(s) 485
BsuRI GGCC 1 cut(s) 134
Cac8I GCNNGC 2 cut(s) 170, 593
CaiI CAGNNNCTG 1 cut(s) 85
CciI TCATGA 1 cut(s) 474
Cfr13I GGNCC 1 cut(s) 511
Csp6I GTAC 2 cut(s) 467, 611
CviAII CATG 3 cut(s) 96, 145, 475
CviJI RGCY 9 cut(s) 105, 134, 154, 201, 313, 343, 390, 535, 653
CviKI_1 RGCY 9 cut(s) 105, 134, 154, 201, 313, 343, 390, 535, 653
CviQI GTAC 2 cut(s) 467, 611
DdeI CTNAG 1 cut(s) 173
Eco47I GGWCC 1 cut(s) 511
EcoRII CCWGG 2 cut(s) 134, 255
FaeI CATG 3 cut(s) 99, 148, 478
FatI CATG 3 cut(s) 95, 144, 474
Fnu4HI GCNGC 1 cut(s) 533
Fsp4HI GCNGC 1 cut(s) 533
FspBI CTAG 1 cut(s) 314
GluI GCNGC 1 cut(s) 533
GsuI CTGGAG 2 cut(s) 278, 614
HaeIII GGCC 1 cut(s) 134
HapII CCGG 1 cut(s) 529
Hin1II CATG 3 cut(s) 99, 148, 478
HindIII AAGCTT 1 cut(s) 103
HinfI GANTC 3 cut(s) 2, 162, 349
HpaII CCGG 1 cut(s) 529
HphI GGTGA 1 cut(s) 61
Hpy166II GTNNAC 2 cut(s) 180, 613
Hpy188I TCNGA 2 cut(s) 117, 435
Hpy188III TCNNGA 4 cut(s) 217, 475, 509, 631
Hpy8I GTNNAC 2 cut(s) 180, 613
HpyCH4III ACNGT 3 cut(s) 336, 431, 606
HpyCH4IV ACGT 1 cut(s) 525
HpyCH4V TGCA 6 cut(s) 43, 65, 191, 449, 464, 564
HpyF10VI GCNNNNNNNGC 1 cut(s) 570
HpyF3I CTNAG 1 cut(s) 173
HpySE526I ACGT 1 cut(s) 525
Hsp92II CATG 3 cut(s) 99, 148, 478
LmnI GCTCC 2 cut(s) 540, 633
Lsp1109I GCAGC 1 cut(s) 544
MaeI CTAG 1 cut(s) 314
MaeII ACGT 1 cut(s) 525
MboII GAAGA 3 cut(s) 316, 490, 588
MfeI CAATTG 1 cut(s) 186
MluCI AATT 3 cut(s) 186, 396, 470
MlyI GAGTC 2 cut(s) 11, 358
MnlI CCTC 5 cut(s) 45, 124, 168, 253, 303
MroXI GAANNNNTTC 1 cut(s) 122
MseI TTAA 2 cut(s) 107, 386
MspCI CTTAAG 1 cut(s) 106
MspI CCGG 1 cut(s) 529
MspR9I CCNGG 2 cut(s) 136, 257
MunI CAATTG 1 cut(s) 186
Mva1269I GAATGC 1 cut(s) 593
MvaI CCWGG 2 cut(s) 136, 257
MwoI GCNNNNNNNGC 1 cut(s) 570
NlaIII CATG 3 cut(s) 99, 148, 478
NlaIV GGNNCC 1 cut(s) 513
NspI RCATGY 1 cut(s) 148
PagI TCATGA 1 cut(s) 474
PctI GAATGC 1 cut(s) 593
PdmI GAANNNNTTC 1 cut(s) 122
PfeI GAWTC 1 cut(s) 162
PkrI GCNGC 1 cut(s) 534
PleI GAGTC 2 cut(s) 10, 357
PpsI GAGTC 2 cut(s) 10, 357
PsiI TTATAA 1 cut(s) 241
Psp6I CCWGG 2 cut(s) 134, 255
PspGI CCWGG 2 cut(s) 134, 255
PspN4I GGNNCC 1 cut(s) 513
PspPI GGNCC 1 cut(s) 511
PstI CTGCAG 2 cut(s) 67, 466
PstNI CAGNNNCTG 1 cut(s) 85
RsaI GTAC 2 cut(s) 468, 612
RsaNI GTAC 2 cut(s) 467, 611
SaqAI TTAA 2 cut(s) 107, 386
SatI GCNGC 1 cut(s) 533
Sau96I GGNCC 1 cut(s) 511
SchI GAGTC 2 cut(s) 11, 358
ScrFI CCNGG 2 cut(s) 136, 257
SfcI CTRYAG 2 cut(s) 63, 462
SinI GGWCC 1 cut(s) 511
SmlI CTYRAG 2 cut(s) 106, 423
SmoI CTYRAG 2 cut(s) 106, 423
Sse9I AATT 3 cut(s) 186, 396, 470
SspMI CTAG 1 cut(s) 314
StyD4I CCNGG 2 cut(s) 134, 255
TaaI ACNGT 3 cut(s) 336, 431, 606
TaiI ACGT 1 cut(s) 528
TaqI TCGA 2 cut(s) 5, 407
TaqII GACCGA 1 cut(s) 316
TasI AATT 3 cut(s) 186, 396, 470
TatI WGTACW 1 cut(s) 466
TfiI GAWTC 1 cut(s) 162
Tru1I TTAA 2 cut(s) 107, 386
Tru9I TTAA 2 cut(s) 107, 386
TseI GCWGC 1 cut(s) 532
TspDTI ATGAA 5 cut(s) 112, 364, 463, 491, 536
Vha464I CTTAAG 1 cut(s) 106
VpaK11BI GGWCC 1 cut(s) 511
XceI RCATGY 1 cut(s) 148
XmnI GAANNNNTTC 1 cut(s) 122
XspI CTAG 1 cut(s) 314
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.