Rroxscaffold_7G00181060

Serine threonine-protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0001303
Physical Location & Seq
Reverse (-)
20317699 .. 20323439
5741 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00181060.1

Sequence Viewer

Length: 1068 bp
ATGAAGAATCTCCATGAGAGGAGAGAAAGACGAAATATGTTGGAGAAGAAGTTGGCTGATGCTGATGTGTCTGAGGAGGATCAGAACAACCTTCTTAAGTTCTTGGAGAAGAAAGAAACCGAATACATGCGGCTTCAGAGGCATAAAATGGGTGTCGATGATTTTGAGTTGCTGACTATGATTGGCAAGGGTGCATTTGGTGAGGTTCGTGTCTGCAGGGAAAAGACAACAGGTTCTGTATATGCCATGAAAAAGCTTAAGAAATCAGAAATGCTTCGTAGAGGCCAGGTTGAGCATGTAAAAGCTGAAAGGAATCTGCTTGCTGAGGTGGACAGCAATTGCATTGTCAAGCTCTATTGTTCTTTTCAAGACGATGACTATCTTTATCTTATAATGGAATACTTACCTGGAGGAGATATGATGACTTTACTTATGAGAAAGGATATTTTGACCGAAGATGAGGCTAGATTTTATGTCGCTGAAACAGTTTTGGCTATTGAGTCTATCCATAAACACAATTATATTCATAGGGATATTAAGCCTGATAATTTACTACTCGATAGATATGGACACTTGAGACTGTCAGATTTTGGATTATGCAAACCTTTAGACTGCAGTACAATTCATGAAGACTTTTCAATAAATAATGCCAATGGTTCTGGACACAATGATGAACGTCCTGCAGCTCCAAAACGCACACAACAAGAGCAACTGCAACATTGGCAGAAGAATAGGAGAATGCTTGCTTATTCAACTGTTGGTACACCTGATTATATTGCTCCAGAAGTTCTAATGAAAAAAGGCTATGGAATGGAATGTGATTGGTGGTCACTTGGGGCTATTATGTATGAAATGCTAGTCGGTTACCCGCCCTTCTATTCTGATGATCCAATGTCAACATGCAGGAAGATAGTAAACTGGAAAACTCATTTGAAATTTCCAGAAGAAGCAAAGCTATCTCCAGAGGCAAAAGATCTTATTAGTAAACTCTTGTGTAATGTCAACCAAAGGTTGGGAACAAATGGCGCAAGTGAAATAAAGGTGTTGTATGGTTCATCCTTGGTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Pkinase Pkinase_C

Protein Analysis

355

Amino Acids

41.18

Weight (kDa)

6.61

Isoelectric Point (pI)

38.78

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pkinase PF00069 56 - 205 1.4e-42 Protein kinase domain
PK_Tyr_Ser-Thr PF07714 56 - 203 1.3e-21 Protein tyrosine and serine/threonine kinase
ABC1 PF03109 129 - 207 9.7e-06 ABC1 atypical kinase-like domain
Pkinase PF00069 249 - 340 4.2e-21 Protein kinase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 392
AccB7I CCANNNNNTGG 1 cut(s) 1012
AciI CCGC 2 cut(s) 130, 869
AclWI GGATC 2 cut(s) 87, 881
AcsI RAATTY 1 cut(s) 935
AcuI CTGAAG 1 cut(s) 119
AfaI GTAC 2 cut(s) 619, 763
AfiI CCNNNNNNNGG 1 cut(s) 1012
AflII CTTAAG 2 cut(s) 95, 257
AgsI TTSAA 4 cut(s) 368, 639, 753, 934
AjnI CCWGG 2 cut(s) 285, 406
AluBI AGCT 5 cut(s) 256, 305, 352, 686, 955
AluI AGCT 5 cut(s) 256, 305, 352, 686, 955
Alw26I GTCTC 1 cut(s) 571
AlwI GGATC 2 cut(s) 87, 881
AlwNI CAGNNNCTG 1 cut(s) 236
AoxI GGCC 1 cut(s) 283
ApeKI GCWGC 1 cut(s) 683
ApoI RAATTY 1 cut(s) 935
Asp700I GAANNNNTTC 1 cut(s) 273
AspLEI GCGC 1 cut(s) 1028
AsuHPI GGTGA 1 cut(s) 212
BbsI GAAGAC 1 cut(s) 636
BbvCI CCTCAGC 1 cut(s) 324
BbvI GCAGC 1 cut(s) 695
BciT130I CCWGG 2 cut(s) 287, 408
BcoDI GTCTC 1 cut(s) 571
BfaI CTAG 2 cut(s) 465, 857
BfmI CTRYAG 3 cut(s) 214, 613, 681
BfrI CTTAAG 2 cut(s) 95, 257
BglII AGATCT 1 cut(s) 973
BisI GCNGC 2 cut(s) 131, 684
BlsI GCNGC 2 cut(s) 132, 685
Bme1390I CCNGG 2 cut(s) 287, 408
BmrFI CCNGG 2 cut(s) 287, 408
BmsI GCATC 1 cut(s) 49
BpiI GAAGAC 1 cut(s) 636
BpmI CTGGAG 3 cut(s) 429, 765, 945
Bpu10I CCTNAGC 1 cut(s) 324
BpuEI CTTGAG 1 cut(s) 595
BsaBI GATNNNNATC 1 cut(s) 378
BsaJI CCNNGG 1 cut(s) 1059
BsaXI ACNNNNNCTCC 2 cut(s) 35, 65
Bsc4I CCNNNNNNNGG 1 cut(s) 1012
Bse1I ACTGG 1 cut(s) 923
Bse8I GATNNNNATC 1 cut(s) 378
BseBI CCWGG 2 cut(s) 287, 408
BseDI CCNNGG 1 cut(s) 1059
BseGI GGATG 1 cut(s) 1055
BseJI GATNNNNATC 1 cut(s) 378
BseLI CCNNNNNNNGG 1 cut(s) 1012
BseMII CTCAG 2 cut(s) 63, 315
BseNI ACTGG 1 cut(s) 923
BseRI GAGGAG 3 cut(s) 34, 89, 426
BseXI GCAGC 1 cut(s) 695
BshFI GGCC 1 cut(s) 285
BslI CCNNNNNNNGG 1 cut(s) 1012
BsmAI GTCTC 1 cut(s) 571
BsmI GAATGC 1 cut(s) 744
BsnI GGCC 1 cut(s) 285
Bsp143I GATC 3 cut(s) 79, 886, 973
BspACI CCGC 2 cut(s) 130, 869
BspANI GGCC 1 cut(s) 285
BspCNI CTCAG 2 cut(s) 64, 316
BspHI TCATGA 1 cut(s) 625
BspMAI CTGCAG 3 cut(s) 218, 617, 685
BspPI GGATC 2 cut(s) 87, 881
BspTI CTTAAG 2 cut(s) 95, 257
BsrI ACTGG 1 cut(s) 923
BssECI CCNNGG 1 cut(s) 1059
BssMI GATC 3 cut(s) 79, 886, 973
BssT1I CCWWGG 1 cut(s) 1059
Bst2UI CCWGG 2 cut(s) 287, 408
Bst4CI ACNGT 3 cut(s) 487, 582, 757
BstAFI CTTAAG 2 cut(s) 95, 257
BstC8I GCNNGC 2 cut(s) 321, 744
BstDEI CTNAG 2 cut(s) 72, 324
BstEII GGTNACC 1 cut(s) 863
BstF5I GGATG 1 cut(s) 1055
BstHHI GCGC 1 cut(s) 1028
BstKTI GATC 3 cut(s) 82, 889, 976
BstMAI GTCTC 1 cut(s) 571
BstMBI GATC 3 cut(s) 79, 886, 973
BstMWI GCNNNNNNNGC 2 cut(s) 139, 721
BstNI CCWGG 2 cut(s) 287, 408
BstNSI RCATGY 3 cut(s) 130, 299, 903
BstPI GGTNACC 1 cut(s) 863
BstSCI CCNGG 2 cut(s) 285, 406
BstSFI CTRYAG 3 cut(s) 214, 613, 681
BstV1I GCAGC 1 cut(s) 695
BstV2I GAAGAC 1 cut(s) 636
BstX2I RGATCY 1 cut(s) 973
BstYI RGATCY 1 cut(s) 973
BsuRI GGCC 1 cut(s) 285
BtsCI GGATG 1 cut(s) 1055
Cac8I GCNNGC 2 cut(s) 321, 744
CaiI CAGNNNCTG 1 cut(s) 236
CciI TCATGA 1 cut(s) 625
CfoI GCGC 1 cut(s) 1028
Csp6I GTAC 2 cut(s) 618, 762
CviAII CATG 6 cut(s) 14, 127, 247, 296, 626, 900
CviQI GTAC 2 cut(s) 618, 762
DdeI CTNAG 2 cut(s) 72, 324
DpnI GATC 3 cut(s) 81, 888, 975
DpnII GATC 3 cut(s) 79, 886, 973
Eco130I CCWWGG 1 cut(s) 1059
Eco57I CTGAAG 1 cut(s) 119
Eco91I GGTNACC 1 cut(s) 863
EcoO65I GGTNACC 1 cut(s) 863
EcoRII CCWGG 2 cut(s) 285, 406
EcoT14I CCWWGG 1 cut(s) 1059
ErhI CCWWGG 1 cut(s) 1059
FaeI CATG 6 cut(s) 17, 130, 250, 299, 629, 903
FatI CATG 6 cut(s) 13, 126, 246, 295, 625, 899
FauI CCCGC 1 cut(s) 876
Fnu4HI GCNGC 2 cut(s) 131, 684
FokI GGATG 1 cut(s) 1042
Fsp4HI GCNGC 2 cut(s) 131, 684
FspBI CTAG 2 cut(s) 465, 857
GlaI GCGC 1 cut(s) 1027
GluI GCNGC 2 cut(s) 131, 684
GsuI CTGGAG 3 cut(s) 429, 765, 945
HaeIII GGCC 1 cut(s) 285
HhaI GCGC 1 cut(s) 1028
Hin1II CATG 6 cut(s) 17, 130, 250, 299, 629, 903
Hin6I GCGC 1 cut(s) 1026
HinP1I GCGC 1 cut(s) 1026
HincII GTYRAC 2 cut(s) 897, 1003
HindII GTYRAC 2 cut(s) 897, 1003
HindIII AAGCTT 1 cut(s) 254
HinfI GANTC 3 cut(s) 7, 313, 500
HphI GGTGA 1 cut(s) 212
Hpy166II GTNNAC 6 cut(s) 331, 764, 897, 916, 986, 1003
Hpy188I TCNGA 6 cut(s) 73, 84, 138, 268, 586, 883
Hpy188III TCNNGA 6 cut(s) 368, 626, 660, 782, 941, 962
Hpy8I GTNNAC 6 cut(s) 331, 764, 897, 916, 986, 1003
HpyAV CCTTC 2 cut(s) 101, 883
HpyCH4III ACNGT 3 cut(s) 487, 582, 757
HpyCH4IV ACGT 1 cut(s) 676
HpyCH4V TGCA 8 cut(s) 194, 216, 342, 600, 615, 683, 715, 903
HpyF10VI GCNNNNNNNGC 2 cut(s) 139, 721
HpyF3I CTNAG 2 cut(s) 72, 324
HpySE526I ACGT 1 cut(s) 676
Hsp92II CATG 6 cut(s) 17, 130, 250, 299, 629, 903
HspAI GCGC 1 cut(s) 1026
Kzo9I GATC 3 cut(s) 79, 886, 973
LmnI GCTCC 2 cut(s) 691, 784
Lsp1109I GCAGC 1 cut(s) 695
LweI GCATC 1 cut(s) 49
MaeI CTAG 2 cut(s) 465, 857
MaeII ACGT 1 cut(s) 676
MaeIII GTNAC 2 cut(s) 828, 863
MalI GATC 3 cut(s) 81, 888, 975
MboI GATC 3 cut(s) 79, 886, 973
MboII GAAGA 8 cut(s) 16, 58, 121, 467, 641, 739, 919, 956
MfeI CAATTG 1 cut(s) 337
MflI RGATCY 1 cut(s) 973
MluCI AATT 5 cut(s) 337, 517, 547, 621, 935
MlyI GAGTC 1 cut(s) 509
MmeI TCCRAC 1 cut(s) 21
MroXI GAANNNNTTC 1 cut(s) 273
MseI TTAA 3 cut(s) 96, 258, 537
MslI CAYNNNNRTG 1 cut(s) 669
MspCI CTTAAG 2 cut(s) 95, 257
MspR9I CCNGG 2 cut(s) 287, 408
MunI CAATTG 1 cut(s) 337
Mva1269I GAATGC 1 cut(s) 744
MvaI CCWGG 2 cut(s) 287, 408
MwoI GCNNNNNNNGC 2 cut(s) 139, 721
NdeII GATC 3 cut(s) 79, 886, 973
NlaIII CATG 6 cut(s) 17, 130, 250, 299, 629, 903
NmuCI GTSAC 1 cut(s) 828
NspI RCATGY 3 cut(s) 130, 299, 903
PagI TCATGA 1 cut(s) 625
PctI GAATGC 1 cut(s) 744
PdmI GAANNNNTTC 1 cut(s) 273
PfeI GAWTC 2 cut(s) 7, 313
PflMI CCANNNNNTGG 1 cut(s) 1012
PkrI GCNGC 2 cut(s) 132, 685
PleI GAGTC 1 cut(s) 508
PpsI GAGTC 1 cut(s) 508
PsiI TTATAA 1 cut(s) 392
Psp6I CCWGG 2 cut(s) 285, 406
PspEI GGTNACC 1 cut(s) 863
PspGI CCWGG 2 cut(s) 285, 406
PstI CTGCAG 3 cut(s) 218, 617, 685
PstNI CAGNNNCTG 1 cut(s) 236
PsuI RGATCY 1 cut(s) 973
RsaI GTAC 2 cut(s) 619, 763
RsaNI GTAC 2 cut(s) 618, 762
RseI CAYNNNNRTG 1 cut(s) 669
SaqAI TTAA 3 cut(s) 96, 258, 537
SatI GCNGC 2 cut(s) 131, 684
Sau3AI GATC 3 cut(s) 79, 886, 973
SchI GAGTC 1 cut(s) 509
ScrFI CCNGG 2 cut(s) 287, 408
SfaNI GCATC 1 cut(s) 49
SfcI CTRYAG 3 cut(s) 214, 613, 681
SmiMI CAYNNNNRTG 1 cut(s) 669
SmlI CTYRAG 3 cut(s) 95, 257, 574
SmoI CTYRAG 3 cut(s) 95, 257, 574
Sse9I AATT 5 cut(s) 337, 517, 547, 621, 935
SsiI CCGC 2 cut(s) 130, 869
SspMI CTAG 2 cut(s) 465, 857
StyD4I CCNGG 2 cut(s) 285, 406
StyI CCWWGG 1 cut(s) 1059
TaaI ACNGT 3 cut(s) 487, 582, 757
TaiI ACGT 1 cut(s) 679
TaqI TCGA 2 cut(s) 156, 558
TaqII GACCGA 1 cut(s) 467
TasI AATT 5 cut(s) 337, 517, 547, 621, 935
TatI WGTACW 1 cut(s) 617
TauI GCSGC 1 cut(s) 133
TfiI GAWTC 2 cut(s) 7, 313
Tru1I TTAA 3 cut(s) 96, 258, 537
Tru9I TTAA 3 cut(s) 96, 258, 537
TseFI GTSAC 1 cut(s) 828
TseI GCWGC 1 cut(s) 683
Tsp45I GTSAC 1 cut(s) 828
TspDTI ATGAA 9 cut(s) 17, 263, 515, 614, 642, 687, 809, 864, 1044
Van91I CCANNNNNTGG 1 cut(s) 1012
Vha464I CTTAAG 2 cut(s) 95, 257
XapI RAATTY 1 cut(s) 935
XceI RCATGY 3 cut(s) 130, 299, 903
XmnI GAANNNNTTC 1 cut(s) 273
XspI CTAG 2 cut(s) 465, 857
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.