Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0037008.1

Orthogroup ID

OG0007701

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 652

Gene Structure 652 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0037008.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 381 bp

atgagaaagtcactgattctgtttggaataggtaccatgttccacggtgcctgtgctcatgctgcagtagattacccctctgttgaccttgaatcttggcgtgaggaaaatggaactaacaaaagcatttcaaccattaacttgaagtgccctgagaacacacgtatatctactgtaaaatttgccagctttggaaatcctacaggctcctgtggatcctacaccaaaggtgactgccacgatcctaactccacttctgtggttgaaaagatatgcttaaaccaaaacaaatgtgccatagaattggcagaagagaaatttagtaagggtttgtgtccgagtgtaacgaagaagcttgcagttgaagtagtgtgcggctga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004553 GO:0004565 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0008150 GO:0009505 GO:0009628 GO:0015925 GO:0016787 GO:0016798 GO:0030312 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0050896 GO:0071944 GO:0080167

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Gal_Lectin Glyco_hydro_35

Protein Analysis

126

Amino Acids

13.56

Weight (kDa)

7.54

Isoelectric Point (pI)

26.71

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007701)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G63810
fragaria_vesca	FvH4_1g25130 FvH4_1g25130 FvH4_1g25130 FvH4_1g25130 FvH4_1g25130
malus_domestica	MD15G1136400.v1.1
prunus_persica	Prupe.4G278500_v2.0.a1 Prupe.4G278500_v2.0.a1 Prupe.4G278500_v2.0.a1
pyrus_communis	pycom15g12300
rosa_chinensis	RchiOBHm_Chr2g0122791
rosa_laevigata	RLG00000018715
rosa_multiflora	Rmu_sc0008528.1_g000013 Rmu_sc0037008.1_g000001
rosa_roxburghii	Rroxscaffold_2G00121170
rosa_rugosa	Rorug02G0242600 Rorug02G0242700 Rorug02G0242700
rosa_samantha	Rh2AG301300 Rh2BG308700 Rh2CG287400 Rh2DG325500
rosa_wichuraiana	Rw2G023890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	32
AccB1I	GGYRCC	2 cut(s)	32, 47
AciI	CCGC	1 cut(s)	375
AclWI	GGATC	3 cut(s)	210, 223, 236
AcsI	RAATTY	2 cut(s)	179, 317
AfaI	GTAC	1 cut(s)	34
AflIII	ACRYGT	1 cut(s)	161
AgsI	TTSAA	5 cut(s)	92, 132, 145, 266, 365
AleI	CACNNNNGTG	1 cut(s)	257
AluBI	AGCT	2 cut(s)	189, 355
AluI	AGCT	2 cut(s)	189, 355
Alw21I	GWGCWC	1 cut(s)	58
AlwI	GGATC	3 cut(s)	210, 223, 236
ApeKI	GCWGC	1 cut(s)	62
ApoI	RAATTY	2 cut(s)	179, 317
Asp718I	GGTACC	1 cut(s)	32
AsuHPI	GGTGA	1 cut(s)	242
BaeGI	GKGCMC	1 cut(s)	152
BamHI	GGATCC	1 cut(s)	215
BanI	GGYRCC	2 cut(s)	32, 47
Bbv12I	GWGCWC	1 cut(s)	58
BbvI	GCAGC	1 cut(s)	49
BfmI	CTRYAG	2 cut(s)	63, 201
BisI	GCNGC	2 cut(s)	63, 376
BlsI	GCNGC	2 cut(s)	64, 377
BmiI	GGNNCC	4 cut(s)	34, 49, 208, 217
BsaAI	YACGTR	1 cut(s)	164
BsaJI	CCNNGG	1 cut(s)	43
BseDI	CCNNGG	1 cut(s)	43
BseMII	CTCAG	1 cut(s)	144
BseSI	GKGCMC	1 cut(s)	152
BseXI	GCAGC	1 cut(s)	49
BshNI	GGYRCC	2 cut(s)	32, 47
BsiHKAI	GWGCWC	1 cut(s)	58
Bsp1286I	GDGCHC	2 cut(s)	58, 152
Bsp143I	GATC	2 cut(s)	215, 241
BspACI	CCGC	1 cut(s)	375
BspCNI	CTCAG	1 cut(s)	145
BspLI	GGNNCC	4 cut(s)	34, 49, 208, 217
BspMAI	CTGCAG	1 cut(s)	67
BspPI	GGATC	3 cut(s)	210, 223, 236
BspT107I	GGYRCC	2 cut(s)	32, 47
BssECI	CCNNGG	1 cut(s)	43
BssMI	GATC	2 cut(s)	215, 241
Bst4CI	ACNGT	2 cut(s)	47, 175
Bst6I	CTCTTC	1 cut(s)	306
BstBAI	YACGTR	1 cut(s)	164
BstC8I	GCNNGC	2 cut(s)	187, 357
BstDEI	CTNAG	1 cut(s)	153
BstDSI	CCRYGG	1 cut(s)	43
BstKTI	GATC	2 cut(s)	218, 244
BstMBI	GATC	2 cut(s)	215, 241
BstMWI	GCNNNNNNNGC	1 cut(s)	62
BstSFI	CTRYAG	2 cut(s)	63, 201
BstSLI	GKGCMC	1 cut(s)	152
BstV1I	GCAGC	1 cut(s)	49
BstX2I	RGATCY	1 cut(s)	215
BstXI	CCANNNNNNTGG	2 cut(s)	259, 304
BstYI	RGATCY	1 cut(s)	215
BtgI	CCRYGG	1 cut(s)	43
BtsIMutI	CAGTG	1 cut(s)	11
Cac8I	GCNNGC	2 cut(s)	187, 357
Csp6I	GTAC	1 cut(s)	33
CviAII	CATG	2 cut(s)	37, 59
CviJI	RGCY	4 cut(s)	189, 207, 355, 378
CviKI_1	RGCY	4 cut(s)	189, 207, 355, 378
CviQI	GTAC	1 cut(s)	33
DdeI	CTNAG	1 cut(s)	153
DpnI	GATC	2 cut(s)	217, 243
DpnII	GATC	2 cut(s)	215, 241
Eam1104I	CTCTTC	1 cut(s)	306
EarI	CTCTTC	1 cut(s)	306
FaeI	CATG	2 cut(s)	40, 62
FaiI	YATR	5 cut(s)	38, 60, 167, 274, 299
FalI	AAGNNNNNCTT	2 cut(s)	260, 292
FatI	CATG	2 cut(s)	36, 58
Fnu4HI	GCNGC	2 cut(s)	63, 376
Fsp4HI	GCNGC	2 cut(s)	63, 376
GluI	GCNGC	2 cut(s)	63, 376
Hin1II	CATG	2 cut(s)	40, 62
HincII	GTYRAC	1 cut(s)	85
HindII	GTYRAC	1 cut(s)	85
HindIII	AAGCTT	1 cut(s)	353
HinfI	GANTC	2 cut(s)	16, 92
HphI	GGTGA	1 cut(s)	242
Hpy166II	GTNNAC	1 cut(s)	85
Hpy188I	TCNGA	1 cut(s)	339
Hpy8I	GTNNAC	1 cut(s)	85
HpyCH4III	ACNGT	2 cut(s)	47, 175
HpyCH4IV	ACGT	1 cut(s)	163
HpyCH4V	TGCA	2 cut(s)	65, 359
HpyF10VI	GCNNNNNNNGC	1 cut(s)	62
HpyF3I	CTNAG	1 cut(s)	153
HpySE526I	ACGT	1 cut(s)	163
Hsp92II	CATG	2 cut(s)	40, 62
KpnI	GGTACC	1 cut(s)	36
Kzo9I	GATC	2 cut(s)	215, 241
LmnI	GCTCC	1 cut(s)	212
LpnPI	CCDG	5 cut(s)	64, 165, 189, 199, 223
Lsp1109I	GCAGC	1 cut(s)	49
MaeII	ACGT	1 cut(s)	163
MaeIII	GTNAC	3 cut(s)	9, 230, 343
MalI	GATC	2 cut(s)	217, 243
MboI	GATC	2 cut(s)	215, 241
MboII	GAAGA	2 cut(s)	323, 361
MflI	RGATCY	1 cut(s)	215
MhlI	GDGCHC	2 cut(s)	58, 152
MluCI	AATT	3 cut(s)	179, 302, 317
MnlI	CCTC	2 cut(s)	88, 97
MseI	TTAA	2 cut(s)	138, 278
MslI	CAYNNNNRTG	1 cut(s)	257
MwoI	GCNNNNNNNGC	1 cut(s)	62
NdeII	GATC	2 cut(s)	215, 241
NlaIII	CATG	2 cut(s)	40, 62
NlaIV	GGNNCC	4 cut(s)	34, 49, 208, 217
NmuCI	GTSAC	2 cut(s)	9, 230
OliI	CACNNNNGTG	1 cut(s)	257
PfeI	GAWTC	2 cut(s)	16, 92
PkrI	GCNGC	2 cut(s)	64, 377
Ppu21I	YACGTR	1 cut(s)	164
PspN4I	GGNNCC	4 cut(s)	34, 49, 208, 217
PstI	CTGCAG	1 cut(s)	67
PsuI	RGATCY	1 cut(s)	215
RsaI	GTAC	1 cut(s)	34
RsaNI	GTAC	1 cut(s)	33
RseI	CAYNNNNRTG	1 cut(s)	257
SaqAI	TTAA	2 cut(s)	138, 278
SatI	GCNGC	2 cut(s)	63, 376
Sau3AI	GATC	2 cut(s)	215, 241
SduI	GDGCHC	2 cut(s)	58, 152
SetI	ASST	6 cut(s)	34, 90, 166, 191, 232, 357
SfcI	CTRYAG	2 cut(s)	63, 201
SmiMI	CAYNNNNRTG	1 cut(s)	257
Sse9I	AATT	3 cut(s)	179, 302, 317
SsiI	CCGC	1 cut(s)	375
TaaI	ACNGT	2 cut(s)	47, 175
TaiI	ACGT	1 cut(s)	166
TasI	AATT	3 cut(s)	179, 302, 317
TauI	GCSGC	1 cut(s)	378
TfiI	GAWTC	2 cut(s)	16, 92
Tru1I	TTAA	2 cut(s)	138, 278
Tru9I	TTAA	2 cut(s)	138, 278
TscAI	CASTG	1 cut(s)	18
TseFI	GTSAC	2 cut(s)	9, 230
TseI	GCWGC	1 cut(s)	62
Tsp45I	GTSAC	2 cut(s)	9, 230
TspRI	CASTG	1 cut(s)	18
XapI	RAATTY	2 cut(s)	179, 317

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.