Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2B

Orthogroup ID

OG0007701

Physical Location & Seq

Genomic Coordinates Reverse (-)

35938718 .. 35940991

Gene Structure 2274 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2BG308700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 891 bp

ATGACAGTTGGTCTGCAGAATGCGGGATCATTTTATGAGTGGGTAGGGGCAGGATTAACTAGTGTCAAGATTAAGGGTTTCAACAATGGTACAATTGATTTGTCTGCACATAATTGGACCTACAAGATTGGGGTGCAAGGAGAACACCTAGGACTTTACAAGAAAGATGGCTCAAGTAATGTAACTTGGGTTTCAACCCCAGACCCGCCAAAGAAACAACCTTTGACGTGGTATAAGGCTATTGTGGACCCTCCGCCAGGTGATGAACCTATTGGACTGGATATGATTGACATGGGAAAAGGTCTGGCTTGGTTGAATGGAGAAGAAATTGGAAGATACTGGCCTAGGAAGAGCCCTACACATGGATGTGTTCAAGAATGCAATTATAGAGGAAAATTTGATCCAGACAAATGCAATACAGGATGTGGAGAACCAACACAGAGATGGTACCATGTTCCACGGTCTTGGTTCAAACCATCTGGAAACGTTCTGGTGATATTTGAGGAGAAAGGTGGAGATCCATTGAAAATTGAGTTTTCGAGAAGGAAAATCTCAGGTGCCTGTGCTCATGCTGCAGTAGATTACCCCTCTGTTGATCTTGAATCTTGGCGTGAGGAAAATGGAACTAACAAAAGCATTTCAACCATTAACTTGAAGTGCCCTGAGAACACACGTATATCTACTGTAAAATTTGCCAGCTTTGGAAATCCTACGGGCTCCTGTGGATCCTACACCAAAGGTGACTGCCACGATCCTAACTCCACTTCTGTGGTTGAAAAGATATGCTTAAACCAAAACAAATGTGCCATAGAATTGGCAGAAGAGAAATTTAGTAGGGGTTTGTGTCCGAGTGTAACGAAGAAGCTTGCAGTTGAAGTAGTGTGCGGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004553 GO:0004565 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0008150 GO:0009505 GO:0009628 GO:0015925 GO:0016787 GO:0016798 GO:0030312 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0050896 GO:0071944 GO:0080167

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Gal_Lectin Glyco_hydro_35

Protein Analysis

296

Amino Acids

32.54

Weight (kDa)

7.91

Isoelectric Point (pI)

27.22

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
BetaGal_gal-bd	PF21467	75 - 162	2.1e-21	Beta-galactosidase, galactose-binding domain
SUEL_Lectin	PF02140	218 - 295	1.7e-18	D-galactoside/L-rhamnose binding SUEL lectin domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007701)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G63810
fragaria_vesca	FvH4_1g25130 FvH4_1g25130 FvH4_1g25130 FvH4_1g25130 FvH4_1g25130
malus_domestica	MD15G1136400.v1.1
prunus_persica	Prupe.4G278500_v2.0.a1 Prupe.4G278500_v2.0.a1 Prupe.4G278500_v2.0.a1
pyrus_communis	pycom15g12300
rosa_chinensis	RchiOBHm_Chr2g0122791
rosa_laevigata	RLG00000018715
rosa_multiflora	Rmu_sc0008528.1_g000013 Rmu_sc0037008.1_g000001
rosa_roxburghii	Rroxscaffold_2G00121170
rosa_rugosa	Rorug02G0242600 Rorug02G0242700 Rorug02G0242700
rosa_samantha	Rh2AG301300 Rh2BG308700 Rh2CG287400 Rh2DG325500
rosa_wichuraiana	Rw2G023890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	447
AccB1I	GGYRCC	2 cut(s)	447, 557
AciI	CCGC	4 cut(s)	23, 206, 254, 885
AclI	AACGTT	1 cut(s)	486
AclWI	GGATC	6 cut(s)	34, 395, 512, 720, 733, 746
AcsI	RAATTY	3 cut(s)	395, 689, 827
AfaI	GTAC	2 cut(s)	91, 449
AfiI	CCNNNNNNNGG	2 cut(s)	257, 362
AflIII	ACRYGT	1 cut(s)	671
AhdI	GACNNNNNGTC	1 cut(s)	9
AhlI	ACTAGT	1 cut(s)	59
AjiI	CACGTC	1 cut(s)	228
AjnI	CCWGG	1 cut(s)	256
AleI	CACNNNNGTG	1 cut(s)	767
AluBI	AGCT	2 cut(s)	699, 865
AluI	AGCT	2 cut(s)	699, 865
Alw21I	GWGCWC	1 cut(s)	568
AlwI	GGATC	6 cut(s)	34, 395, 512, 720, 733, 746
AoxI	GGCC	1 cut(s)	341
ApeKI	GCWGC	1 cut(s)	572
ApoI	RAATTY	3 cut(s)	395, 689, 827
Asp718I	GGTACC	1 cut(s)	447
AspA2I	CCTAGG	2 cut(s)	148, 344
AspS9I	GGNCC	2 cut(s)	117, 247
AsuHPI	GGTGA	3 cut(s)	272, 505, 752
AvaII	GGWCC	2 cut(s)	117, 247
AvrII	CCTAGG	2 cut(s)	148, 344
BaeGI	GKGCMC	1 cut(s)	662
BamHI	GGATCC	1 cut(s)	725
BanI	GGYRCC	2 cut(s)	447, 557
BanII	GRGCYC	2 cut(s)	356, 719
Bbv12I	GWGCWC	1 cut(s)	568
BbvI	GCAGC	1 cut(s)	559
BccI	CCATC	3 cut(s)	161, 438, 484
BciT130I	CCWGG	1 cut(s)	258
BcuI	ACTAGT	1 cut(s)	59
BfaI	CTAG	3 cut(s)	60, 149, 345
BfmI	CTRYAG	2 cut(s)	14, 573
BisI	GCNGC	2 cut(s)	573, 886
BlnI	CCTAGG	2 cut(s)	148, 344
BlsI	GCNGC	2 cut(s)	574, 887
Bme1390I	CCNGG	1 cut(s)	258
Bme18I	GGWCC	2 cut(s)	117, 247
BmeRI	GACNNNNNGTC	1 cut(s)	9
BmgBI	CACGTC	1 cut(s)	228
BmgT120I	GGNCC	2 cut(s)	117, 247
BmiI	GGNNCC	5 cut(s)	249, 449, 559, 718, 727
BmrFI	CCNGG	1 cut(s)	258
BpuEI	CTTGAG	1 cut(s)	157
BsaAI	YACGTR	1 cut(s)	674
BsaJI	CCNNGG	3 cut(s)	148, 344, 458
Bsc4I	CCNNNNNNNGG	2 cut(s)	257, 362
Bse1I	ACTGG	2 cut(s)	282, 344
BseBI	CCWGG	1 cut(s)	258
BseDI	CCNNGG	3 cut(s)	148, 344, 458
BseGI	GGATG	2 cut(s)	371, 428
BseLI	CCNNNNNNNGG	2 cut(s)	257, 362
BseMII	CTCAG	2 cut(s)	567, 654
BseNI	ACTGG	2 cut(s)	282, 344
BseRI	GAGGAG	1 cut(s)	518
BseSI	GKGCMC	1 cut(s)	662
BseXI	GCAGC	1 cut(s)	559
BsgI	GTGCAG	1 cut(s)	90
BshFI	GGCC	1 cut(s)	343
BshNI	GGYRCC	2 cut(s)	447, 557
BsiHKAI	GWGCWC	1 cut(s)	568
BslI	CCNNNNNNNGG	2 cut(s)	257, 362
BsmI	GAATGC	2 cut(s)	25, 383
BsnI	GGCC	1 cut(s)	343
Bsp1286I	GDGCHC	4 cut(s)	356, 568, 662, 719
Bsp143I	GATC	6 cut(s)	26, 400, 517, 595, 725, 751
BspACI	CCGC	4 cut(s)	23, 206, 254, 885
BspANI	GGCC	1 cut(s)	343
BspCNI	CTCAG	2 cut(s)	566, 655
BspLI	GGNNCC	5 cut(s)	249, 449, 559, 718, 727
BspMAI	CTGCAG	2 cut(s)	18, 577
BspPI	GGATC	6 cut(s)	34, 395, 512, 720, 733, 746
BspQI	GCTCTTC	1 cut(s)	344
BspT107I	GGYRCC	2 cut(s)	447, 557
BsrI	ACTGG	2 cut(s)	282, 344
BssECI	CCNNGG	3 cut(s)	148, 344, 458
BssMI	GATC	6 cut(s)	26, 400, 517, 595, 725, 751
BssT1I	CCWWGG	2 cut(s)	148, 344
Bst2UI	CCWGG	1 cut(s)	258
Bst4CI	ACNGT	3 cut(s)	7, 462, 685
Bst6I	CTCTTC	2 cut(s)	344, 816
BstBAI	YACGTR	1 cut(s)	674
BstC8I	GCNNGC	2 cut(s)	697, 867
BstDEI	CTNAG	2 cut(s)	553, 663
BstDSI	CCRYGG	1 cut(s)	458
BstENI	CCTNNNNNAGG	1 cut(s)	255
BstF5I	GGATG	2 cut(s)	371, 428
BstKTI	GATC	6 cut(s)	29, 403, 520, 598, 728, 754
BstMBI	GATC	6 cut(s)	26, 400, 517, 595, 725, 751
BstMWI	GCNNNNNNNGC	1 cut(s)	572
BstNI	CCWGG	1 cut(s)	258
BstSCI	CCNGG	1 cut(s)	256
BstSFI	CTRYAG	2 cut(s)	14, 573
BstSLI	GKGCMC	1 cut(s)	662
BstV1I	GCAGC	1 cut(s)	559
BstX2I	RGATCY	2 cut(s)	517, 725
BstXI	CCANNNNNNTGG	3 cut(s)	465, 769, 814
BstYI	RGATCY	2 cut(s)	517, 725
BsuRI	GGCC	1 cut(s)	343
BtgI	CCRYGG	1 cut(s)	458
BtrI	CACGTC	1 cut(s)	228
BtsCI	GGATG	2 cut(s)	371, 428
Cac8I	GCNNGC	2 cut(s)	697, 867
Cfr13I	GGNCC	2 cut(s)	117, 247
Csp6I	GTAC	2 cut(s)	90, 448
CviAII	CATG	4 cut(s)	292, 362, 452, 569
CviJI	RGCY	9 cut(s)	171, 239, 308, 343, 354, 699, 717, 865, 888
CviKI_1	RGCY	9 cut(s)	171, 239, 308, 343, 354, 699, 717, 865, 888
CviQI	GTAC	2 cut(s)	90, 448
DdeI	CTNAG	2 cut(s)	553, 663
DpnI	GATC	6 cut(s)	28, 402, 519, 597, 727, 753
DpnII	GATC	6 cut(s)	26, 400, 517, 595, 725, 751
DriI	GACNNNNNGTC	1 cut(s)	9
Eam1104I	CTCTTC	2 cut(s)	344, 816
Eam1105I	GACNNNNNGTC	1 cut(s)	9
EarI	CTCTTC	2 cut(s)	344, 816
EciI	GGCGGA	1 cut(s)	243
Eco130I	CCWWGG	2 cut(s)	148, 344
Eco24I	GRGCYC	2 cut(s)	356, 719
Eco47I	GGWCC	2 cut(s)	117, 247
EcoNI	CCTNNNNNAGG	1 cut(s)	255
EcoRII	CCWGG	1 cut(s)	256
EcoT14I	CCWWGG	2 cut(s)	148, 344
EcoT38I	GRGCYC	2 cut(s)	356, 719
ErhI	CCWWGG	2 cut(s)	148, 344
FaeI	CATG	4 cut(s)	295, 365, 455, 572
FalI	AAGNNNNNCTT	2 cut(s)	770, 802
FatI	CATG	4 cut(s)	291, 361, 451, 568
FauI	CCCGC	2 cut(s)	16, 213
Fnu4HI	GCNGC	2 cut(s)	573, 886
FokI	GGATG	2 cut(s)	378, 435
FriOI	GRGCYC	2 cut(s)	356, 719
Fsp4HI	GCNGC	2 cut(s)	573, 886
FspBI	CTAG	3 cut(s)	60, 149, 345
GluI	GCNGC	2 cut(s)	573, 886
HaeIII	GGCC	1 cut(s)	343
Hin1II	CATG	4 cut(s)	295, 365, 455, 572
HindIII	AAGCTT	1 cut(s)	863
HinfI	GANTC	1 cut(s)	602
HphI	GGTGA	3 cut(s)	272, 505, 752
Hpy166II	GTNNAC	1 cut(s)	247
Hpy188I	TCNGA	1 cut(s)	849
Hpy188III	TCNNGA	6 cut(s)	67, 374, 404, 480, 540, 599
Hpy8I	GTNNAC	1 cut(s)	247
HpyAV	CCTTC	1 cut(s)	537
HpyCH4III	ACNGT	3 cut(s)	7, 462, 685
HpyCH4IV	ACGT	3 cut(s)	227, 486, 673
HpyCH4V	TGCA	7 cut(s)	16, 107, 136, 381, 414, 575, 869
HpyF10VI	GCNNNNNNNGC	1 cut(s)	572
HpyF3I	CTNAG	2 cut(s)	553, 663
HpySE526I	ACGT	3 cut(s)	227, 486, 673
Hsp92II	CATG	4 cut(s)	295, 365, 455, 572
KpnI	GGTACC	1 cut(s)	451
Kzo9I	GATC	6 cut(s)	26, 400, 517, 595, 725, 751
LguI	GCTCTTC	1 cut(s)	344
LmnI	GCTCC	1 cut(s)	722
Lsp1109I	GCAGC	1 cut(s)	559
MaeI	CTAG	3 cut(s)	60, 149, 345
MaeII	ACGT	3 cut(s)	227, 486, 673
MaeIII	GTNAC	3 cut(s)	181, 740, 853
MalI	GATC	6 cut(s)	28, 402, 519, 597, 727, 753
MboI	GATC	6 cut(s)	26, 400, 517, 595, 725, 751
MboII	GAAGA	5 cut(s)	335, 345, 361, 833, 871
MfeI	CAATTG	1 cut(s)	93
MflI	RGATCY	2 cut(s)	517, 725
MhlI	GDGCHC	4 cut(s)	356, 568, 662, 719
MluCI	AATT	9 cut(s)	93, 112, 327, 382, 395, 528, 689, 812, 827
MnlI	CCTC	5 cut(s)	261, 383, 496, 598, 607
MseI	TTAA	4 cut(s)	56, 72, 648, 788
MslI	CAYNNNNRTG	4 cut(s)	364, 366, 442, 767
MspR9I	CCNGG	1 cut(s)	258
MunI	CAATTG	1 cut(s)	93
Mva1269I	GAATGC	2 cut(s)	25, 383
MvaI	CCWGG	1 cut(s)	258
MwoI	GCNNNNNNNGC	1 cut(s)	572
NdeII	GATC	6 cut(s)	26, 400, 517, 595, 725, 751
NlaIII	CATG	4 cut(s)	295, 365, 455, 572
NlaIV	GGNNCC	5 cut(s)	249, 449, 559, 718, 727
NmuCI	GTSAC	1 cut(s)	740
OliI	CACNNNNGTG	1 cut(s)	767
PciSI	GCTCTTC	1 cut(s)	344
PctI	GAATGC	2 cut(s)	25, 383
PfeI	GAWTC	1 cut(s)	602
PkrI	GCNGC	2 cut(s)	574, 887
Ppu21I	YACGTR	1 cut(s)	674
Psp1406I	AACGTT	1 cut(s)	486
Psp6I	CCWGG	1 cut(s)	256
PspGI	CCWGG	1 cut(s)	256
PspN4I	GGNNCC	5 cut(s)	249, 449, 559, 718, 727
PspPI	GGNCC	2 cut(s)	117, 247
PstI	CTGCAG	2 cut(s)	18, 577
PsuI	RGATCY	2 cut(s)	517, 725
RsaI	GTAC	2 cut(s)	91, 449
RsaNI	GTAC	2 cut(s)	90, 448
RseI	CAYNNNNRTG	4 cut(s)	364, 366, 442, 767
SapI	GCTCTTC	1 cut(s)	344
SaqAI	TTAA	4 cut(s)	56, 72, 648, 788
SatI	GCNGC	2 cut(s)	573, 886
Sau3AI	GATC	6 cut(s)	26, 400, 517, 595, 725, 751
Sau96I	GGNCC	2 cut(s)	117, 247
ScrFI	CCNGG	1 cut(s)	258
SduI	GDGCHC	4 cut(s)	356, 568, 662, 719
SfcI	CTRYAG	2 cut(s)	14, 573
SinI	GGWCC	2 cut(s)	117, 247
SmiMI	CAYNNNNRTG	4 cut(s)	364, 366, 442, 767
SmlI	CTYRAG	1 cut(s)	172
SmoI	CTYRAG	1 cut(s)	172
SpeI	ACTAGT	1 cut(s)	59
Sse9I	AATT	9 cut(s)	93, 112, 327, 382, 395, 528, 689, 812, 827
SsiI	CCGC	4 cut(s)	23, 206, 254, 885
SspMI	CTAG	3 cut(s)	60, 149, 345
StyD4I	CCNGG	1 cut(s)	256
StyI	CCWWGG	2 cut(s)	148, 344
TaaI	ACNGT	3 cut(s)	7, 462, 685
TaiI	ACGT	3 cut(s)	230, 489, 676
TaqI	TCGA	1 cut(s)	539
TasI	AATT	9 cut(s)	93, 112, 327, 382, 395, 528, 689, 812, 827
TauI	GCSGC	1 cut(s)	888
TfiI	GAWTC	1 cut(s)	602
Tru1I	TTAA	4 cut(s)	56, 72, 648, 788
Tru9I	TTAA	4 cut(s)	56, 72, 648, 788
TseFI	GTSAC	1 cut(s)	740
TseI	GCWGC	1 cut(s)	572
Tsp45I	GTSAC	1 cut(s)	740
TspDTI	ATGAA	1 cut(s)	279
VpaK11BI	GGWCC	2 cut(s)	117, 247
XagI	CCTNNNNNAGG	1 cut(s)	255
XapI	RAATTY	3 cut(s)	395, 689, 827
XcmI	CCANNNNNNNNNTGG	1 cut(s)	441
XmaJI	CCTAGG	2 cut(s)	148, 344
XspI	CTAG	3 cut(s)	60, 149, 345

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.