Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0041066.1

Orthogroup ID

OG0012627

Physical Location & Seq

Genomic Coordinates Forward (+)

254 .. 967

Gene Structure 714 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0041066.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 714 bp

atggctgaggaacacgagaagcctgctgcctctgctgtggaggcaccgtgtgaggtggcggtggtggagtcggaggcgccgcctgccgagaagtctgtgaccgagaaggaagctgtgccggtgccggagccggagccggagccggaggccaagcctgccgtggaggtcgttgaggaggcggagaagcctgccaaggctgaggaagaggttgatcctaaaatcgtcgctcagtcagtttcgttcaaggaagagagctacgttgttggtgagttgcccgagccgcagaagaaggctctggaggagctgaagcagctcatccaggaggccctcaacaagcacgagttcaccgcgccgccgactccgccgccggttaaggaggaggagaagccggctgtggaggaagagaagaaagaagaaaagaaggaggaggaaaaagctgccgagcctgaggcccctgcccctgcccctgtttgtgaagcagaggcaccaaaaactgaagatgctccagaagcttccaagtgcgaggaagtgaaaccagaggaagaagtgaaagaagagaagatcgttgttgtgactgaggtggttgagactgttaccaaggttgacgatgacggcgccaagactgtggaggcgattgaggagaccatagtggccgcagtccctactccggcggcggcgaccgaggaaccagccaaagaagctgaagcggcagtc

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000902 GO:0000904 GO:0002020 GO:0003006 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005794 GO:0005886 GO:0005911 GO:0008150 GO:0009506 GO:0009507 GO:0009536 GO:0009653 GO:0009826 GO:0009856 GO:0009860 GO:0009932 GO:0009987 GO:0012505 GO:0016020 GO:0016043 GO:0016049 GO:0019899 GO:0022414 GO:0030054 GO:0030154 GO:0032501 GO:0032502 GO:0032989 GO:0040007 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0044706 GO:0048046 GO:0048468 GO:0048588 GO:0048589 GO:0048856 GO:0048868 GO:0048869 GO:0051704 GO:0055044 GO:0060560 GO:0071840 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CRAL_TRIO CRAL_TRIO_N

Protein Analysis

238

Amino Acids

25.58

Weight (kDa)

4.31

Isoelectric Point (pI)

74.56

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012627)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g31750
malus_domestica	MD08G1218200.v1.1 MD15G1406000.v1.1
prunus_persica	Prupe.1G555200_v2.0.a1 Prupe.1G555200_v2.0.a1
pyrus_communis	pycom08g18910 pycom15g36280
rosa_chinensis	RchiOBHm_Chr7g0227641
rosa_laevigata	RLG00000001631
rosa_multiflora	Rmu_co8489989.1_g000001 Rmu_sc0041066.1_g000001
rosa_roxburghii	Rroxscaffold_3G00231990
rosa_rugosa	Rorug07G0242500 Rorug07G0242600
rosa_samantha	Rh7AG396100 Rh7BG377700 Rh7CG414800 Rh7DG391700
rosa_wichuraiana	Rw7G032930

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	5 cut(s)	43, 76, 121, 484, 614
AccII	CGCG	1 cut(s)	350
AclWI	GGATC	1 cut(s)	206
AcoI	YGGCCR	1 cut(s)	651
AcuI	CTGAAG	2 cut(s)	326, 516
AcyI	GRCGYC	2 cut(s)	77, 615
AdeI	CACNNNGTG	1 cut(s)	50
AfiI	CCNNNNNNNGG	1 cut(s)	667
AgsI	TTSAA	1 cut(s)	244
AjnI	CCWGG	1 cut(s)	318
AluBI	AGCT	7 cut(s)	113, 255, 304, 313, 437, 512, 701
AluI	AGCT	7 cut(s)	113, 255, 304, 313, 437, 512, 701
Alw26I	GTCTC	2 cut(s)	581, 635
AlwI	GGATC	1 cut(s)	206
Ama87I	CYCGRG	1 cut(s)	275
AoxI	GGCC	4 cut(s)	147, 324, 450, 651
ApeKI	GCWGC	3 cut(s)	26, 310, 437
AspLEI	GCGC	3 cut(s)	79, 352, 617
AspS9I	GGNCC	2 cut(s)	325, 451
AsuHPI	GGTGA	2 cut(s)	278, 337
AvaI	CYCGRG	1 cut(s)	275
AxyI	CCTNAGG	1 cut(s)	447
BanI	GGYRCC	5 cut(s)	43, 76, 121, 484, 614
BauI	CACGAG	2 cut(s)	14, 338
BbvCI	CCTCAGC	2 cut(s)	6, 198
BbvI	GCAGC	3 cut(s)	13, 322, 424
BceAI	ACGGC	2 cut(s)	143, 628
BcgI	CGANNNNNNTGC	2 cut(s)	5, 39
BciT130I	CCWGG	1 cut(s)	320
BcoDI	GTCTC	2 cut(s)	581, 635
BfoI	RGCGCY	2 cut(s)	80, 618
Bme1390I	CCNGG	1 cut(s)	320
BmeT110I	CYCGRG	1 cut(s)	275
BmgT120I	GGNCC	2 cut(s)	325, 451
BmrFI	CCNGG	1 cut(s)	320
BmsI	GCATC	1 cut(s)	490
BpmI	CTGGAG	2 cut(s)	317, 489
Bpu10I	CCTNAGC	2 cut(s)	6, 198
BsaHI	GRCGYC	2 cut(s)	77, 615
BsaI	GGTCTC	1 cut(s)	635
BsaJI	CCNNGG	4 cut(s)	159, 192, 597, 681
BsaXI	ACNNNNNCTCC	2 cut(s)	32, 62
Bsc4I	CCNNNNNNNGG	1 cut(s)	667
Bse118I	RCCGGY	3 cut(s)	118, 367, 388
Bse21I	CCTNAGG	1 cut(s)	447
BseBI	CCWGG	1 cut(s)	320
BseDI	CCNNGG	4 cut(s)	159, 192, 597, 681
BseGI	GGATG	1 cut(s)	315
BseLI	CCNNNNNNNGG	1 cut(s)	667
BseMII	CTCAG	4 cut(s)	189, 242, 438, 567
BseRI	GAGGAG	6 cut(s)	188, 314, 392, 395, 440, 653
BseXI	GCAGC	3 cut(s)	13, 322, 424
Bsh1236I	CGCG	1 cut(s)	350
Bsh1285I	CGRYCG	1 cut(s)	681
BshFI	GGCC	4 cut(s)	149, 326, 452, 653
BshNI	GGYRCC	5 cut(s)	43, 76, 121, 484, 614
BsiEI	CGRYCG	1 cut(s)	681
BsiHKCI	CYCGRG	1 cut(s)	275
BsiSI	CCGG	8 cut(s)	119, 125, 131, 137, 143, 368, 389, 668
BslFI	GGGAC	1 cut(s)	644
BslI	CCNNNNNNNGG	1 cut(s)	667
BsmAI	GTCTC	2 cut(s)	581, 635
BsmFI	GGGAC	1 cut(s)	644
BsnI	GGCC	4 cut(s)	149, 326, 452, 653
Bso31I	GGTCTC	1 cut(s)	635
BsoBI	CYCGRG	1 cut(s)	275
Bsp143I	GATC	2 cut(s)	211, 561
BspANI	GGCC	4 cut(s)	149, 326, 452, 653
BspCNI	CTCAG	4 cut(s)	190, 241, 439, 568
BspFNI	CGCG	1 cut(s)	350
BspPI	GGATC	1 cut(s)	206
BspT107I	GGYRCC	5 cut(s)	43, 76, 121, 484, 614
BspTNI	GGTCTC	1 cut(s)	635
BsrFI	RCCGGY	3 cut(s)	118, 367, 388
BssAI	RCCGGY	3 cut(s)	118, 367, 388
BssECI	CCNNGG	4 cut(s)	159, 192, 597, 681
BssMI	GATC	2 cut(s)	211, 561
BssNI	GRCGYC	2 cut(s)	77, 615
BssSI	CACGAG	2 cut(s)	14, 338
BssT1I	CCWWGG	2 cut(s)	192, 597
Bst2BI	CACGAG	2 cut(s)	14, 338
Bst2UI	CCWGG	1 cut(s)	320
Bst4CI	ACNGT	3 cut(s)	48, 592, 625
Bst6I	CTCTTC	4 cut(s)	198, 243, 396, 549
BstACI	GRCGYC	2 cut(s)	77, 615
BstC8I	GCNNGC	5 cut(s)	24, 84, 156, 189, 390
BstDEI	CTNAG	5 cut(s)	6, 198, 228, 447, 576
BstDSI	CCRYGG	1 cut(s)	159
BstF5I	GGATG	1 cut(s)	315
BstFNI	CGCG	1 cut(s)	350
BstH2I	RGCGCY	2 cut(s)	80, 618
BstHHI	GCGC	3 cut(s)	79, 352, 617
BstKTI	GATC	2 cut(s)	214, 564
BstMAI	GTCTC	2 cut(s)	581, 635
BstMBI	GATC	2 cut(s)	211, 561
BstMCI	CGRYCG	1 cut(s)	681
BstNI	CCWGG	1 cut(s)	320
BstSCI	CCNGG	1 cut(s)	318
BstUI	CGCG	1 cut(s)	350
BstV1I	GCAGC	3 cut(s)	13, 322, 424
BstXI	CCANNNNNNTGG	1 cut(s)	625
Bsu36I	CCTNAGG	1 cut(s)	447
BsuRI	GGCC	4 cut(s)	149, 326, 452, 653
BtgI	CCRYGG	1 cut(s)	159
BtsCI	GGATG	1 cut(s)	315
Cac8I	GCNNGC	5 cut(s)	24, 84, 156, 189, 390
CfoI	GCGC	3 cut(s)	79, 352, 617
Cfr10I	RCCGGY	3 cut(s)	118, 367, 388
Cfr13I	GGNCC	2 cut(s)	325, 451
DdeI	CTNAG	5 cut(s)	6, 198, 228, 447, 576
DinI	GGCGCC	2 cut(s)	78, 616
DpnI	GATC	2 cut(s)	213, 563
DpnII	GATC	2 cut(s)	211, 561
DraIII	CACNNNGTG	1 cut(s)	50
EaeI	YGGCCR	1 cut(s)	651
Eam1104I	CTCTTC	4 cut(s)	198, 243, 396, 549
EarI	CTCTTC	4 cut(s)	198, 243, 396, 549
EciI	GGCGGA	2 cut(s)	194, 351
Eco130I	CCWWGG	2 cut(s)	192, 597
Eco31I	GGTCTC	1 cut(s)	635
Eco57I	CTGAAG	2 cut(s)	326, 516
Eco81I	CCTNAGG	1 cut(s)	447
Eco88I	CYCGRG	1 cut(s)	275
EcoO109I	RGGNCCY	2 cut(s)	325, 451
EcoRII	CCWGG	1 cut(s)	318
EcoT14I	CCWWGG	2 cut(s)	192, 597
EgeI	GGCGCC	2 cut(s)	78, 616
EheI	GGCGCC	2 cut(s)	78, 616
ErhI	CCWWGG	2 cut(s)	192, 597
FaiI	YATR	1 cut(s)	647
FaqI	GGGAC	1 cut(s)	644
FokI	GGATG	1 cut(s)	302
GlaI	GCGC	3 cut(s)	78, 351, 616
GsuI	CTGGAG	2 cut(s)	317, 489
HaeII	RGCGCY	2 cut(s)	80, 618
HaeIII	GGCC	4 cut(s)	149, 326, 452, 653
HapII	CCGG	8 cut(s)	119, 125, 131, 137, 143, 368, 389, 668
HhaI	GCGC	3 cut(s)	79, 352, 617
Hin1I	GRCGYC	2 cut(s)	77, 615
Hin6I	GCGC	3 cut(s)	77, 350, 615
HinP1I	GCGC	3 cut(s)	77, 350, 615
HincII	GTYRAC	1 cut(s)	604
HindII	GTYRAC	1 cut(s)	604
HindIII	AAGCTT	1 cut(s)	510
HinfI	GANTC	2 cut(s)	68, 358
HpaII	CCGG	8 cut(s)	119, 125, 131, 137, 143, 368, 389, 668
HphI	GGTGA	2 cut(s)	278, 337
Hpy166II	GTNNAC	2 cut(s)	345, 604
Hpy188I	TCNGA	1 cut(s)	73
Hpy188III	TCNNGA	2 cut(s)	296, 506
Hpy8I	GTNNAC	2 cut(s)	345, 604
Hpy99I	CGWCG	1 cut(s)	227
HpyAV	CCTTC	3 cut(s)	100, 283, 415
HpyCH4III	ACNGT	3 cut(s)	48, 592, 625
HpyCH4IV	ACGT	1 cut(s)	258
HpyF3I	CTNAG	5 cut(s)	6, 198, 228, 447, 576
HpySE526I	ACGT	1 cut(s)	258
Hsp92I	GRCGYC	2 cut(s)	77, 615
HspAI	GCGC	3 cut(s)	77, 350, 615
KasI	GGCGCC	2 cut(s)	76, 614
KroI	GCCGGC	1 cut(s)	388
KroNI	GCCGGC	1 cut(s)	390
Kzo9I	GATC	2 cut(s)	211, 561
LmnI	GCTCC	5 cut(s)	127, 133, 139, 301, 508
Lsp1109I	GCAGC	3 cut(s)	13, 322, 424
LweI	GCATC	1 cut(s)	490
MaeII	ACGT	1 cut(s)	258
MaeIII	GTNAC	3 cut(s)	97, 571, 592
MalI	GATC	2 cut(s)	213, 563
MboI	GATC	2 cut(s)	211, 561
Mly113I	GGCGCC	2 cut(s)	77, 615
MlyI	GAGTC	2 cut(s)	77, 352
MmeI	TCCRAC	1 cut(s)	51
MroNI	GCCGGC	1 cut(s)	388
MseI	TTAA	1 cut(s)	372
MspI	CCGG	8 cut(s)	119, 125, 131, 137, 143, 368, 389, 668
MspR9I	CCNGG	1 cut(s)	320
MvaI	CCWGG	1 cut(s)	320
MvnI	CGCG	1 cut(s)	350
NaeI	GCCGGC	1 cut(s)	390
NarI	GGCGCC	2 cut(s)	77, 615
NdeII	GATC	2 cut(s)	211, 561
NgoMIV	GCCGGC	1 cut(s)	388
NmeAIII	GCCGAG	2 cut(s)	112, 466
NmuCI	GTSAC	2 cut(s)	97, 571
PdiI	GCCGGC	1 cut(s)	390
PfoI	TCCNGGA	1 cut(s)	318
PleI	GAGTC	2 cut(s)	76, 352
PluTI	GGCGCC	2 cut(s)	80, 618
PpsI	GAGTC	2 cut(s)	76, 352
Psp6I	CCWGG	1 cut(s)	318
PspGI	CCWGG	1 cut(s)	318
PspPI	GGNCC	2 cut(s)	325, 451
SaqAI	TTAA	1 cut(s)	372
Sau3AI	GATC	2 cut(s)	211, 561
Sau96I	GGNCC	2 cut(s)	325, 451
SchI	GAGTC	2 cut(s)	77, 352
ScrFI	CCNGG	1 cut(s)	320
SfaNI	GCATC	1 cut(s)	490
SfoI	GGCGCC	2 cut(s)	78, 616
SspDI	GGCGCC	2 cut(s)	76, 614
StyD4I	CCNGG	1 cut(s)	318
StyI	CCWWGG	2 cut(s)	192, 597
TaaI	ACNGT	3 cut(s)	48, 592, 625
TaiI	ACGT	1 cut(s)	261
TaqII	GACCGA	2 cut(s)	116, 695
TauI	GCSGC	8 cut(s)	82, 283, 355, 367, 656, 674, 677, 710
Tru1I	TTAA	1 cut(s)	372
Tru9I	TTAA	1 cut(s)	372
TseFI	GTSAC	2 cut(s)	97, 571
TseI	GCWGC	3 cut(s)	26, 310, 437
Tsp45I	GTSAC	2 cut(s)	97, 571
XcmI	CCANNNNNNNNNTGG	1 cut(s)	157

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.