Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7D

Orthogroup ID

OG0012627

Physical Location & Seq

Genomic Coordinates Reverse (-)

53597233 .. 53615516

Gene Structure 18284 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7DG391700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1065 bp

ATGGCTGAGGAACACGAGAAGCCTGCTGCCTCTGCTGTGGAGGCACCGTGTGAGGTGGCGGTGGTGGAGTCGGAGGCGCCGCCTGCCGAGAAGTCTGTGACCGAGAAGGAAGCTGTGCCGGTGCCGGAGCCGGAGCCGGAGGCCAAGCCTGCCGTGGAGGTCGTTGAGGAGGCGGAGAAGCCTGCCAAGGCTGAGGAAGAGGTTGATCCTAAAATCGTCGCTCAGTCAGTTTCGTTCAAGGAAGAGAGCTACGTTGTTGGTGAGTTGCCCGAGCCGCAGAAGAAGGCTCTGGAGGAGCTGAAGCAGCTCATCCAGGAGGCCCTCAACAAGCACGAGTTCACCGCGCCGCCGACTCCGCCGCCGGCACCAAAAACTGAAGATGCTCCAGAAGCTTCCAAGTGCGAGGAAGTGAAACCAGAGGAAGAAGTGAAAGAAGAGAAGATCGTTGTTGTGACTGAGGTGGTTGAGACTGTTACCAAGGTTGACGATGACGGCGCCAAGACTGTGGAGGCGATTGAGGAGACCATAGTGGCCGCAGTCCCTACTCCGGCGGCGGCGACCGAGGAACCAGCCAAAGAAGCTGAAGCGGCAGTCGAGGCGACTCCACCGGCGGAGGAGCCGAAAAAAGAAGCGGAAGGGGCCCCGGCTGCTCCTCCGGTGGAGCCAGAGGAGGTGTTTATCAATGTGCCATGGTGGTACCTTGCTTTCAATAGGATGATCAGCCCCTTCCTGACCCAGAGGACCAAGAGCAAGTTTGTGTTTGCTGGTCCATCCAAATCCGCCGAGACCCTATTCAATTCTAATGGGATTATGTTGGATTCGCAGAGTGGTGTTCTTGTTTGGGAAGTGAGAGTATTGGCTTGGGATGTGAGCTACGGAGCCGAGTTTGTGCCAAGTGCTGAGGATGCTTACACAATCATATTGCAAAAGACTAGAAAGGTTGCCCCAAGTGATGAGCCAGTGATCTCGAACAGCTTCAAGATCGGCGAGCCAGGGAAGGTTGTGCTCACCATTGACAACCAAAGTTCCAAGAAGAAAAAGCTCCTCTACAGGATTTACCTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000902 GO:0000904 GO:0002020 GO:0003006 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005794 GO:0005886 GO:0005911 GO:0008150 GO:0009506 GO:0009507 GO:0009536 GO:0009653 GO:0009826 GO:0009856 GO:0009860 GO:0009932 GO:0009987 GO:0012505 GO:0016020 GO:0016043 GO:0016049 GO:0019899 GO:0022414 GO:0030054 GO:0030154 GO:0032501 GO:0032502 GO:0032989 GO:0040007 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0044706 GO:0048046 GO:0048468 GO:0048588 GO:0048589 GO:0048856 GO:0048868 GO:0048869 GO:0051704 GO:0055044 GO:0060560 GO:0071840 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CRAL_TRIO CRAL_TRIO_N

Protein Analysis

354

Amino Acids

38.5

Weight (kDa)

4.52

Isoelectric Point (pI)

56.96

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GOLD_PATL1_C	PF25099	276 - 346	1.2e-32	Patellin-1-like, C-terminal GOLD domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012627)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g31750
malus_domestica	MD08G1218200.v1.1 MD15G1406000.v1.1
prunus_persica	Prupe.1G555200_v2.0.a1 Prupe.1G555200_v2.0.a1
pyrus_communis	pycom08g18910 pycom15g36280
rosa_chinensis	RchiOBHm_Chr7g0227641
rosa_laevigata	RLG00000001631
rosa_multiflora	Rmu_co8489989.1_g000001 Rmu_sc0041066.1_g000001
rosa_roxburghii	Rroxscaffold_3G00231990
rosa_rugosa	Rorug07G0242500 Rorug07G0242600
rosa_samantha	Rh7AG396100 Rh7BG377700 Rh7CG414800 Rh7DG391700
rosa_wichuraiana	Rw7G032930

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	696
AccB1I	GGYRCC	6 cut(s)	43, 76, 121, 364, 494, 696
AccII	CGCG	1 cut(s)	344
AclWI	GGATC	1 cut(s)	200
AcoI	YGGCCR	1 cut(s)	531
AcuI	CTGAAG	3 cut(s)	320, 396, 603
AcyI	GRCGYC	2 cut(s)	77, 495
AdeI	CACNNNGTG	1 cut(s)	50
AfaI	GTAC	1 cut(s)	698
AfiI	CCNNNNNNNGG	1 cut(s)	547
AgsI	TTSAA	4 cut(s)	238, 709, 796, 979
AjnI	CCWGG	2 cut(s)	312, 991
AluBI	AGCT	9 cut(s)	113, 249, 298, 307, 392, 581, 873, 975, 1042
AluI	AGCT	9 cut(s)	113, 249, 298, 307, 392, 581, 873, 975, 1042
Alw21I	GWGCWC	1 cut(s)	1008
Alw26I	GTCTC	3 cut(s)	461, 515, 779
AlwI	GGATC	1 cut(s)	200
Ama87I	CYCGRG	1 cut(s)	269
AoxI	GGCC	4 cut(s)	141, 318, 531, 639
ApaI	GGGCCC	1 cut(s)	643
ApeKI	GCWGC	3 cut(s)	26, 304, 647
Asp700I	GAANNNNTTC	1 cut(s)	974
Asp718I	GGTACC	1 cut(s)	696
AspLEI	GCGC	3 cut(s)	79, 346, 497
AspS9I	GGNCC	5 cut(s)	319, 639, 640, 741, 767
AsuC2I	CCSGG	1 cut(s)	644
AsuHPI	GGTGA	3 cut(s)	272, 331, 1000
AvaI	CYCGRG	1 cut(s)	269
AvaII	GGWCC	2 cut(s)	741, 767
BaeGI	GKGCMC	1 cut(s)	643
BanI	GGYRCC	6 cut(s)	43, 76, 121, 364, 494, 696
BanII	GRGCYC	1 cut(s)	643
BauI	CACGAG	2 cut(s)	14, 332
Bbv12I	GWGCWC	1 cut(s)	1008
BbvCI	CCTCAGC	3 cut(s)	6, 192, 900
BbvI	GCAGC	3 cut(s)	13, 316, 634
BccI	CCATC	1 cut(s)	778
BceAI	ACGGC	2 cut(s)	137, 508
BcgI	CGANNNNNNTGC	2 cut(s)	5, 39
BciT130I	CCWGG	2 cut(s)	314, 993
BclI	TGATCA	1 cut(s)	717
BcnI	CCSGG	1 cut(s)	644
BcoDI	GTCTC	3 cut(s)	461, 515, 779
BfaI	CTAG	1 cut(s)	933
BfmI	CTRYAG	1 cut(s)	1048
BfoI	RGCGCY	2 cut(s)	80, 498
Bme1390I	CCNGG	3 cut(s)	314, 644, 993
Bme18I	GGWCC	2 cut(s)	741, 767
BmeT110I	CYCGRG	1 cut(s)	269
BmgT120I	GGNCC	5 cut(s)	319, 639, 640, 741, 767
BmrFI	CCNGG	3 cut(s)	314, 644, 993
BmsI	GCATC	2 cut(s)	370, 895
BpmI	CTGGAG	2 cut(s)	311, 369
Bpu10I	CCTNAGC	3 cut(s)	6, 192, 900
BpuMI	CCSGG	1 cut(s)	644
BsaHI	GRCGYC	2 cut(s)	77, 495
BsaI	GGTCTC	2 cut(s)	515, 779
BsaJI	CCNNGG	7 cut(s)	153, 186, 477, 561, 642, 689, 992
BsaWI	WCCGGW	1 cut(s)	655
BsaXI	ACNNNNNCTCC	2 cut(s)	32, 62
Bsc4I	CCNNNNNNNGG	1 cut(s)	547
Bse118I	RCCGGY	3 cut(s)	118, 361, 607
Bse1I	ACTGG	1 cut(s)	959
BseBI	CCWGG	2 cut(s)	314, 993
BseDI	CCNNGG	7 cut(s)	153, 186, 477, 561, 642, 689, 992
BseGI	GGATG	5 cut(s)	309, 720, 770, 871, 910
BseLI	CCNNNNNNNGG	1 cut(s)	547
BseMII	CTCAG	4 cut(s)	183, 236, 447, 891
BseNI	ACTGG	1 cut(s)	959
BseRI	GAGGAG	7 cut(s)	182, 308, 533, 629, 642, 683, 1034
BseSI	GKGCMC	1 cut(s)	643
BseXI	GCAGC	3 cut(s)	13, 316, 634
Bsh1236I	CGCG	1 cut(s)	344
Bsh1285I	CGRYCG	1 cut(s)	561
BshFI	GGCC	4 cut(s)	143, 320, 533, 641
BshNI	GGYRCC	6 cut(s)	43, 76, 121, 364, 494, 696
BsiEI	CGRYCG	1 cut(s)	561
BsiHKAI	GWGCWC	1 cut(s)	1008
BsiHKCI	CYCGRG	1 cut(s)	269
BsiSI	CCGG	9 cut(s)	119, 125, 131, 137, 362, 548, 608, 644, 656
BslFI	GGGAC	1 cut(s)	524
BslI	CCNNNNNNNGG	1 cut(s)	547
BsmAI	GTCTC	3 cut(s)	461, 515, 779
BsmFI	GGGAC	1 cut(s)	524
BsnI	GGCC	4 cut(s)	143, 320, 533, 641
Bso31I	GGTCTC	2 cut(s)	515, 779
BsoBI	CYCGRG	1 cut(s)	269
Bsp120I	GGGCCC	1 cut(s)	639
Bsp1286I	GDGCHC	2 cut(s)	643, 1008
Bsp143I	GATC	5 cut(s)	205, 441, 717, 963, 981
Bsp19I	CCATGG	1 cut(s)	689
BspANI	GGCC	4 cut(s)	143, 320, 533, 641
BspCNI	CTCAG	4 cut(s)	184, 235, 448, 892
BspFNI	CGCG	1 cut(s)	344
BspPI	GGATC	1 cut(s)	200
BspT107I	GGYRCC	6 cut(s)	43, 76, 121, 364, 494, 696
BspTNI	GGTCTC	2 cut(s)	515, 779
BsrFI	RCCGGY	3 cut(s)	118, 361, 607
BsrI	ACTGG	1 cut(s)	959
BssAI	RCCGGY	3 cut(s)	118, 361, 607
BssECI	CCNNGG	7 cut(s)	153, 186, 477, 561, 642, 689, 992
BssMI	GATC	5 cut(s)	205, 441, 717, 963, 981
BssNI	GRCGYC	2 cut(s)	77, 495
BssSI	CACGAG	2 cut(s)	14, 332
BssT1I	CCWWGG	3 cut(s)	186, 477, 689
Bst2BI	CACGAG	2 cut(s)	14, 332
Bst2UI	CCWGG	2 cut(s)	314, 993
Bst4CI	ACNGT	3 cut(s)	48, 472, 505
Bst6I	CTCTTC	3 cut(s)	192, 237, 429
BstACI	GRCGYC	2 cut(s)	77, 495
BstC8I	GCNNGC	6 cut(s)	24, 84, 150, 183, 363, 989
BstDEI	CTNAG	5 cut(s)	6, 192, 222, 456, 900
BstDSI	CCRYGG	2 cut(s)	153, 689
BstF5I	GGATG	5 cut(s)	309, 720, 770, 871, 910
BstFNI	CGCG	1 cut(s)	344
BstH2I	RGCGCY	2 cut(s)	80, 498
BstHHI	GCGC	3 cut(s)	79, 346, 497
BstKTI	GATC	5 cut(s)	208, 444, 720, 966, 984
BstMAI	GTCTC	3 cut(s)	461, 515, 779
BstMBI	GATC	5 cut(s)	205, 441, 717, 963, 981
BstMCI	CGRYCG	1 cut(s)	561
BstNI	CCWGG	2 cut(s)	314, 993
BstSCI	CCNGG	3 cut(s)	312, 642, 991
BstSFI	CTRYAG	1 cut(s)	1048
BstSLI	GKGCMC	1 cut(s)	643
BstUI	CGCG	1 cut(s)	344
BstV1I	GCAGC	3 cut(s)	13, 316, 634
BstXI	CCANNNNNNTGG	1 cut(s)	505
BsuRI	GGCC	4 cut(s)	143, 320, 533, 641
BtgI	CCRYGG	2 cut(s)	153, 689
BtsCI	GGATG	5 cut(s)	309, 720, 770, 871, 910
BtsIMutI	CAGTG	1 cut(s)	966
Cac8I	GCNNGC	6 cut(s)	24, 84, 150, 183, 363, 989
CfoI	GCGC	3 cut(s)	79, 346, 497
Cfr10I	RCCGGY	3 cut(s)	118, 361, 607
Cfr13I	GGNCC	5 cut(s)	319, 639, 640, 741, 767
Csp6I	GTAC	1 cut(s)	697
CviAII	CATG	1 cut(s)	690
CviQI	GTAC	1 cut(s)	697
DdeI	CTNAG	5 cut(s)	6, 192, 222, 456, 900
DinI	GGCGCC	2 cut(s)	78, 496
DpnI	GATC	5 cut(s)	207, 443, 719, 965, 983
DpnII	GATC	5 cut(s)	205, 441, 717, 963, 981
DraIII	CACNNNGTG	1 cut(s)	50
EaeI	YGGCCR	1 cut(s)	531
Eam1104I	CTCTTC	3 cut(s)	192, 237, 429
EarI	CTCTTC	3 cut(s)	192, 237, 429
EciI	GGCGGA	4 cut(s)	188, 345, 626, 769
Eco130I	CCWWGG	3 cut(s)	186, 477, 689
Eco24I	GRGCYC	1 cut(s)	643
Eco31I	GGTCTC	2 cut(s)	515, 779
Eco47I	GGWCC	2 cut(s)	741, 767
Eco57I	CTGAAG	3 cut(s)	320, 396, 603
Eco88I	CYCGRG	1 cut(s)	269
EcoO109I	RGGNCCY	3 cut(s)	319, 639, 640
EcoRII	CCWGG	2 cut(s)	312, 991
EcoT14I	CCWWGG	3 cut(s)	186, 477, 689
EcoT38I	GRGCYC	1 cut(s)	643
EgeI	GGCGCC	2 cut(s)	78, 496
EheI	GGCGCC	2 cut(s)	78, 496
ErhI	CCWWGG	3 cut(s)	186, 477, 689
FaeI	CATG	1 cut(s)	693
FaiI	YATR	4 cut(s)	527, 691, 812, 920
FaqI	GGGAC	1 cut(s)	524
FatI	CATG	1 cut(s)	689
FbaI	TGATCA	1 cut(s)	717
FokI	GGATG	5 cut(s)	296, 727, 757, 878, 917
FriOI	GRGCYC	1 cut(s)	643
FspBI	CTAG	1 cut(s)	933
GlaI	GCGC	3 cut(s)	78, 345, 496
GsuI	CTGGAG	2 cut(s)	311, 369
HaeII	RGCGCY	2 cut(s)	80, 498
HaeIII	GGCC	4 cut(s)	143, 320, 533, 641
HapII	CCGG	9 cut(s)	119, 125, 131, 137, 362, 548, 608, 644, 656
HhaI	GCGC	3 cut(s)	79, 346, 497
Hin1I	GRCGYC	2 cut(s)	77, 495
Hin1II	CATG	1 cut(s)	693
Hin6I	GCGC	3 cut(s)	77, 344, 495
HinP1I	GCGC	3 cut(s)	77, 344, 495
HincII	GTYRAC	1 cut(s)	484
HindII	GTYRAC	1 cut(s)	484
HindIII	AAGCTT	1 cut(s)	390
HinfI	GANTC	4 cut(s)	68, 352, 601, 818
HpaII	CCGG	9 cut(s)	119, 125, 131, 137, 362, 548, 608, 644, 656
HphI	GGTGA	3 cut(s)	272, 331, 1000
Hpy166II	GTNNAC	2 cut(s)	339, 484
Hpy188I	TCNGA	1 cut(s)	73
Hpy188III	TCNNGA	5 cut(s)	290, 386, 730, 967, 979
Hpy8I	GTNNAC	2 cut(s)	339, 484
Hpy99I	CGWCG	1 cut(s)	221
HpyAV	CCTTC	5 cut(s)	100, 277, 629, 736, 991
HpyCH4III	ACNGT	3 cut(s)	48, 472, 505
HpyCH4IV	ACGT	1 cut(s)	252
HpyCH4V	TGCA	1 cut(s)	925
HpyF3I	CTNAG	5 cut(s)	6, 192, 222, 456, 900
HpySE526I	ACGT	1 cut(s)	252
Hsp92I	GRCGYC	2 cut(s)	77, 495
Hsp92II	CATG	1 cut(s)	693
HspAI	GCGC	3 cut(s)	77, 344, 495
KasI	GGCGCC	2 cut(s)	76, 494
KpnI	GGTACC	1 cut(s)	700
KroI	GCCGGC	1 cut(s)	361
KroNI	GCCGGC	1 cut(s)	363
Ksp22I	TGATCA	1 cut(s)	717
Kzo9I	GATC	5 cut(s)	205, 441, 717, 963, 981
LmnI	GCTCC	9 cut(s)	127, 133, 295, 388, 616, 655, 661, 878, 1047
Lsp1109I	GCAGC	3 cut(s)	13, 316, 634
LweI	GCATC	2 cut(s)	370, 895
MaeI	CTAG	1 cut(s)	933
MaeII	ACGT	1 cut(s)	252
MaeIII	GTNAC	3 cut(s)	97, 451, 472
MalI	GATC	5 cut(s)	207, 443, 719, 965, 983
MboI	GATC	5 cut(s)	205, 441, 717, 963, 981
MboII	GAAGA	8 cut(s)	209, 254, 292, 389, 434, 446, 451, 1045
MhlI	GDGCHC	2 cut(s)	643, 1008
MluCI	AATT	1 cut(s)	796
Mly113I	GGCGCC	2 cut(s)	77, 495
MlyI	GAGTC	3 cut(s)	77, 346, 595
MmeI	TCCRAC	2 cut(s)	51, 795
MroNI	GCCGGC	1 cut(s)	361
MroXI	GAANNNNTTC	1 cut(s)	974
MspI	CCGG	9 cut(s)	119, 125, 131, 137, 362, 548, 608, 644, 656
MspR9I	CCNGG	3 cut(s)	314, 644, 993
MvaI	CCWGG	2 cut(s)	314, 993
MvnI	CGCG	1 cut(s)	344
NaeI	GCCGGC	1 cut(s)	363
NarI	GGCGCC	2 cut(s)	77, 495
NciI	CCSGG	1 cut(s)	644
NcoI	CCATGG	1 cut(s)	689
NdeII	GATC	5 cut(s)	205, 441, 717, 963, 981
NgoMIV	GCCGGC	1 cut(s)	361
NlaIII	CATG	1 cut(s)	693
NmeAIII	GCCGAG	3 cut(s)	112, 808, 907
NmuCI	GTSAC	2 cut(s)	97, 451
PdiI	GCCGGC	1 cut(s)	363
PdmI	GAANNNNTTC	1 cut(s)	974
PfeI	GAWTC	1 cut(s)	818
PfoI	TCCNGGA	1 cut(s)	312
PleI	GAGTC	3 cut(s)	76, 346, 595
PluTI	GGCGCC	2 cut(s)	80, 498
PpsI	GAGTC	3 cut(s)	76, 346, 595
Psp6I	CCWGG	2 cut(s)	312, 991
PspGI	CCWGG	2 cut(s)	312, 991
PspOMI	GGGCCC	1 cut(s)	639
PspPI	GGNCC	5 cut(s)	319, 639, 640, 741, 767
RsaI	GTAC	1 cut(s)	698
RsaNI	GTAC	1 cut(s)	697
Sau3AI	GATC	5 cut(s)	205, 441, 717, 963, 981
Sau96I	GGNCC	5 cut(s)	319, 639, 640, 741, 767
SchI	GAGTC	3 cut(s)	77, 346, 595
ScrFI	CCNGG	3 cut(s)	314, 644, 993
SduI	GDGCHC	2 cut(s)	643, 1008
SfaNI	GCATC	2 cut(s)	370, 895
SfcI	CTRYAG	1 cut(s)	1048
SfoI	GGCGCC	2 cut(s)	78, 496
SgrAI	CRCCGGYG	1 cut(s)	607
SinI	GGWCC	2 cut(s)	741, 767
Sse9I	AATT	1 cut(s)	796
SspDI	GGCGCC	2 cut(s)	76, 494
SspMI	CTAG	1 cut(s)	933
StyD4I	CCNGG	3 cut(s)	312, 642, 991
StyI	CCWWGG	3 cut(s)	186, 477, 689
TaaI	ACNGT	3 cut(s)	48, 472, 505
TaiI	ACGT	1 cut(s)	255
TaqI	TCGA	2 cut(s)	594, 968
TaqII	GACCGA	2 cut(s)	116, 575
TasI	AATT	1 cut(s)	796
TauI	GCSGC	8 cut(s)	82, 277, 349, 361, 536, 554, 557, 590
TfiI	GAWTC	1 cut(s)	818
TscAI	CASTG	1 cut(s)	966
TseFI	GTSAC	2 cut(s)	97, 451
TseI	GCWGC	3 cut(s)	26, 304, 647
Tsp45I	GTSAC	2 cut(s)	97, 451
TspGWI	ACGGA	1 cut(s)	891
TspRI	CASTG	1 cut(s)	966
VpaK11BI	GGWCC	2 cut(s)	741, 767
XcmI	CCANNNNNNNNNTGG	1 cut(s)	151
XmnI	GAANNNNTTC	1 cut(s)	974
XspI	CTAG	1 cut(s)	933

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.