Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000007

Orthogroup ID

OG0012627

Physical Location & Seq

Genomic Coordinates Reverse (-)

22315272 .. 22316942

Gene Structure 1671 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug07G0242600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 405 bp

ATGATTCCAACTCGGGTCTTTGAGCTTAAAGTTGGTTTCTTTCGATGGGGATCAGCTGGACAAGTTGCCAGGACCATGATCAAGGAGGAGGGTTTCGGTTCATTGTATAAGGTGAGAATTCAATTGGGTCAGGGATCAGCTGGACAAGTTGCCAGGACCATGATCAAGGAGGAGGGTTTTGGTTCATTGTTTAAGAGAAGAGGCAAGGTCTTGTGGAGTTTCTTACACCTGAAGAGGCTTTGGTTGTCATTTGATGGCAGTTCATTCTTTGGTTCTATTCCCAAAATCAGGCGCGCTAAGGCTGGGCGGTTTGACCCGAGGGACCGAGAAACCGATACGATCCGGACCGGAATGGACGGACCATTCGGGTATGGTTTGAATACAGAAATCCTCGGTTCGGGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000902 GO:0000904 GO:0002020 GO:0003006 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005794 GO:0005886 GO:0005911 GO:0008150 GO:0009506 GO:0009507 GO:0009536 GO:0009653 GO:0009826 GO:0009856 GO:0009860 GO:0009932 GO:0009987 GO:0012505 GO:0016020 GO:0016043 GO:0016049 GO:0019899 GO:0022414 GO:0030054 GO:0030154 GO:0032501 GO:0032502 GO:0032989 GO:0040007 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0044706 GO:0048046 GO:0048468 GO:0048588 GO:0048589 GO:0048856 GO:0048868 GO:0048869 GO:0051704 GO:0055044 GO:0060560 GO:0071840 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CRAL_TRIO CRAL_TRIO_N

Protein Analysis

134

Amino Acids

15.06

Weight (kDa)

10.73

Isoelectric Point (pI)

30.76

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012627)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g31750
malus_domestica	MD08G1218200.v1.1 MD15G1406000.v1.1
prunus_persica	Prupe.1G555200_v2.0.a1 Prupe.1G555200_v2.0.a1
pyrus_communis	pycom08g18910 pycom15g36280
rosa_chinensis	RchiOBHm_Chr7g0227641
rosa_laevigata	RLG00000001631
rosa_multiflora	Rmu_co8489989.1_g000001 Rmu_sc0041066.1_g000001
rosa_roxburghii	Rroxscaffold_3G00231990
rosa_rugosa	Rorug07G0242500 Rorug07G0242600
rosa_samantha	Rh7AG396100 Rh7BG377700 Rh7CG414800 Rh7DG391700
rosa_wichuraiana	Rw7G032930

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	294
AccIII	TCCGGA	1 cut(s)	342
AciI	CCGC	1 cut(s)	307
AclWI	GGATC	3 cut(s)	58, 142, 334
AcsI	RAATTY	1 cut(s)	117
AcuI	CTGAAG	1 cut(s)	251
AfiI	CCNNNNNNNGG	2 cut(s)	288, 397
AgsI	TTSAA	2 cut(s)	122, 379
AjnI	CCWGG	2 cut(s)	68, 152
AluBI	AGCT	3 cut(s)	25, 56, 140
AluI	AGCT	3 cut(s)	25, 56, 140
AlwI	GGATC	3 cut(s)	58, 142, 334
Ama87I	CYCGRG	2 cut(s)	12, 316
Aor13HI	TCCGGA	1 cut(s)	342
ApoI	RAATTY	1 cut(s)	117
ArsI	GACNNNNNNTTYG	2 cut(s)	347, 379
AspLEI	GCGC	2 cut(s)	294, 296
AspS9I	GGNCC	5 cut(s)	72, 156, 322, 345, 359
AsuHPI	GGTGA	1 cut(s)	124
AvaI	CYCGRG	2 cut(s)	12, 316
AvaII	GGWCC	5 cut(s)	72, 156, 322, 345, 359
BccI	CCATC	2 cut(s)	39, 248
BciT130I	CCWGG	2 cut(s)	70, 154
BclI	TGATCA	2 cut(s)	78, 162
Bme1390I	CCNGG	2 cut(s)	70, 154
Bme18I	GGWCC	5 cut(s)	72, 156, 322, 345, 359
BmeT110I	CYCGRG	2 cut(s)	12, 316
BmgT120I	GGNCC	5 cut(s)	72, 156, 322, 345, 359
BmiI	GGNNCC	1 cut(s)	323
BmrFI	CCNGG	2 cut(s)	70, 154
Bpu10I	CCTNAGC	1 cut(s)	297
BsaBI	GATNNNNATC	1 cut(s)	49
BsaJI	CCNNGG	2 cut(s)	317, 391
BsaWI	WCCGGW	2 cut(s)	342, 347
Bsc4I	CCNNNNNNNGG	2 cut(s)	288, 397
Bse8I	GATNNNNATC	1 cut(s)	49
BseAI	TCCGGA	1 cut(s)	342
BseBI	CCWGG	2 cut(s)	70, 154
BseDI	CCNNGG	2 cut(s)	317, 391
BseJI	GATNNNNATC	1 cut(s)	49
BseLI	CCNNNNNNNGG	2 cut(s)	288, 397
BsePI	GCGCGC	1 cut(s)	292
BseRI	GAGGAG	2 cut(s)	101, 185
BseYI	CCCAGC	1 cut(s)	302
Bsh1236I	CGCG	1 cut(s)	294
BsiHKCI	CYCGRG	2 cut(s)	12, 316
BsiSI	CCGG	2 cut(s)	343, 348
BslFI	GGGAC	1 cut(s)	335
BslI	CCNNNNNNNGG	2 cut(s)	288, 397
BsmFI	GGGAC	1 cut(s)	335
BsoBI	CYCGRG	2 cut(s)	12, 316
Bsp13I	TCCGGA	1 cut(s)	342
Bsp143I	GATC	5 cut(s)	50, 78, 134, 162, 339
BspACI	CCGC	1 cut(s)	307
BspEI	TCCGGA	1 cut(s)	342
BspFNI	CGCG	1 cut(s)	294
BspLI	GGNNCC	1 cut(s)	323
BspPI	GGATC	3 cut(s)	58, 142, 334
BssECI	CCNNGG	2 cut(s)	317, 391
BssHII	GCGCGC	1 cut(s)	292
BssMI	GATC	5 cut(s)	50, 78, 134, 162, 339
Bst2UI	CCWGG	2 cut(s)	70, 154
Bst6I	CTCTTC	2 cut(s)	193, 227
BstC8I	GCNNGC	1 cut(s)	294
BstDEI	CTNAG	1 cut(s)	297
BstFNI	CGCG	1 cut(s)	294
BstHHI	GCGC	2 cut(s)	294, 296
BstKTI	GATC	5 cut(s)	53, 81, 137, 165, 342
BstMBI	GATC	5 cut(s)	50, 78, 134, 162, 339
BstNI	CCWGG	2 cut(s)	70, 154
BstSCI	CCNGG	2 cut(s)	68, 152
BstUI	CGCG	1 cut(s)	294
Cac8I	GCNNGC	1 cut(s)	294
CfoI	GCGC	2 cut(s)	294, 296
Cfr13I	GGNCC	5 cut(s)	72, 156, 322, 345, 359
CpoI	CGGWCCG	1 cut(s)	345
CspI	CGGWCCG	1 cut(s)	345
CviAII	CATG	2 cut(s)	76, 160
CviJI	RGCY	6 cut(s)	25, 56, 140, 238, 302, 402
CviKI_1	RGCY	6 cut(s)	25, 56, 140, 238, 302, 402
DdeI	CTNAG	1 cut(s)	297
DpnI	GATC	5 cut(s)	52, 80, 136, 164, 341
DpnII	GATC	5 cut(s)	50, 78, 134, 162, 339
Eam1104I	CTCTTC	2 cut(s)	193, 227
EarI	CTCTTC	2 cut(s)	193, 227
Eco47I	GGWCC	5 cut(s)	72, 156, 322, 345, 359
Eco57I	CTGAAG	1 cut(s)	251
Eco88I	CYCGRG	2 cut(s)	12, 316
EcoRI	GAATTC	1 cut(s)	117
EcoRII	CCWGG	2 cut(s)	68, 152
FaeI	CATG	2 cut(s)	79, 163
FaiI	YATR	4 cut(s)	77, 108, 161, 372
FaqI	GGGAC	1 cut(s)	335
FatI	CATG	2 cut(s)	75, 159
FbaI	TGATCA	2 cut(s)	78, 162
GlaI	GCGC	2 cut(s)	293, 295
GsaI	CCCAGC	1 cut(s)	306
HapII	CCGG	2 cut(s)	343, 348
HhaI	GCGC	2 cut(s)	294, 296
Hin1II	CATG	2 cut(s)	79, 163
Hin6I	GCGC	2 cut(s)	292, 294
HinP1I	GCGC	2 cut(s)	292, 294
HinfI	GANTC	1 cut(s)	4
HpaII	CCGG	2 cut(s)	343, 348
HphI	GGTGA	1 cut(s)	124
Hpy188III	TCNNGA	1 cut(s)	343
HpyF3I	CTNAG	1 cut(s)	297
Hsp92II	CATG	2 cut(s)	79, 163
HspAI	GCGC	2 cut(s)	292, 294
Kpn2I	TCCGGA	1 cut(s)	342
Ksp22I	TGATCA	2 cut(s)	78, 162
Kzo9I	GATC	5 cut(s)	50, 78, 134, 162, 339
MalI	GATC	5 cut(s)	52, 80, 136, 164, 341
MboI	GATC	5 cut(s)	50, 78, 134, 162, 339
MboII	GAAGA	2 cut(s)	210, 244
MfeI	CAATTG	1 cut(s)	122
MluCI	AATT	2 cut(s)	117, 122
MmeI	TCCRAC	1 cut(s)	32
MnlI	CCTC	8 cut(s)	79, 82, 163, 166, 194, 228, 312, 401
MroI	TCCGGA	1 cut(s)	342
MseI	TTAA	2 cut(s)	27, 192
MspA1I	CMGCKG	2 cut(s)	56, 140
MspI	CCGG	2 cut(s)	343, 348
MspR9I	CCNGG	2 cut(s)	70, 154
MunI	CAATTG	1 cut(s)	122
MvaI	CCWGG	2 cut(s)	70, 154
MvnI	CGCG	1 cut(s)	294
NdeII	GATC	5 cut(s)	50, 78, 134, 162, 339
NlaIII	CATG	2 cut(s)	79, 163
NlaIV	GGNNCC	1 cut(s)	323
PauI	GCGCGC	1 cut(s)	292
PfeI	GAWTC	1 cut(s)	4
Psp6I	CCWGG	2 cut(s)	68, 152
PspFI	CCCAGC	1 cut(s)	302
PspGI	CCWGG	2 cut(s)	68, 152
PspN4I	GGNNCC	1 cut(s)	323
PspPI	GGNCC	5 cut(s)	72, 156, 322, 345, 359
PteI	GCGCGC	1 cut(s)	292
PvuII	CAGCTG	2 cut(s)	56, 140
Rsr2I	CGGWCCG	1 cut(s)	345
RsrII	CGGWCCG	1 cut(s)	345
SaqAI	TTAA	2 cut(s)	27, 192
Sau3AI	GATC	5 cut(s)	50, 78, 134, 162, 339
Sau96I	GGNCC	5 cut(s)	72, 156, 322, 345, 359
ScrFI	CCNGG	2 cut(s)	70, 154
SetI	ASST	6 cut(s)	27, 58, 114, 142, 210, 231
SinI	GGWCC	5 cut(s)	72, 156, 322, 345, 359
Sse9I	AATT	2 cut(s)	117, 122
SsiI	CCGC	1 cut(s)	307
StyD4I	CCNGG	2 cut(s)	68, 152
TaqI	TCGA	1 cut(s)	43
TaqII	GACCGA	1 cut(s)	339
TasI	AATT	2 cut(s)	117, 122
TfiI	GAWTC	1 cut(s)	4
Tru1I	TTAA	2 cut(s)	27, 192
Tru9I	TTAA	2 cut(s)	27, 192
TspDTI	ATGAA	3 cut(s)	90, 174, 252
TspGWI	ACGGA	1 cut(s)	372
VpaK11BI	GGWCC	5 cut(s)	72, 156, 322, 345, 359
XapI	RAATTY	1 cut(s)	117

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.