Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7B

Orthogroup ID

OG0012627

Physical Location & Seq

Genomic Coordinates Reverse (-)

40626704 .. 40628927

Gene Structure 2224 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7BG377700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1797 bp

ATGGCTGAGGAACACGAGAAGCCTGCTGCCTCTGCTGTGGAGGCACCGTGTGAGGTGGCGGTGGTGGAGTCGGAGGCGCCGCCTGCCGAGAAGTCTGTGACCGAGAAGGAAGCTGTGCCGGAGCCGGAGCCGGAGGCCAAGCCTGCCGTGGAGGTCGTTGAGGAGGCGGAGAAGCCTGCCAAGGCTGAGGAAGAGGTTGATCCTAAAATCGTCGCTCAGTCGGTTTCGTTCAAGGAAGAGAGCTACGTTGTTGGTGAGCTCCCCGAGCCGCAGAAGAAGGCTCTGGAGGAGCTGAAGCAGCTCATCCAGGAGGCACTCAACAAGCACGAGTTCACCGCGCCGCCGACTCCGCCGCCGGTTAAGGAGGAGGAGAAGCCGGCTGTGGAGGAAGAGAAGAAAGAAGAAAAGAAGGAGGAGGAAAAAGCTGCCGAGCCTGAGGCCCCTGCCCCTGTTTGTGAAGCAGAGGCACCAAAAACTGAAGAAGCTCCAGAAGCTTCCAAGAGCGAGGAAGTGAAACCAGAGGAAGAAGTGAAAGAAGAGAAGATCGTTGTTGTGACTGAGGTGGTTGAGACTGTTACCAAGGTTGACGATGACGGCGCCAAGACTGTGGAGGCGATTGAGGAGACCATAGTGGCCGCAGTCCCTACTCCGGAGGCGGCGACCGAAGAACCAGCCAAAGAAGCTGAAGCGGCAGTCGAGGCGACTCCAACGGCGGAGGAGCCGAAAAAAGAAGCGGAAGAGGCCCCGGCTGCTCCTCCGGTGGAGCCAGAGGAGGTCTACGTCTTTGGAATCCCGATTCTGGGTGACGAGCGCAGCGACGTCATTCTGCTCAAGTTCCTGAGGGCTAGGGATTTCAAGGTGAAGGACGCCTTCGCCATGATCAAGAACACCGTGAAGTGGCGCAAGGAGTTCGGGATCGACGCCCTGCTGGAAGAGGAGCTTGGAAGCCACTGGGAGAAGGTGGTGTTCACTCACGGCGTCGACAAGGAAGGCCACCCTGTGTGCTACAACGTGTTTGGTGAGTTCCAGAACAAGGAGCTGTACCAGAACACGTTCACTGATGAAGAGAAACGGTCCAAGTTCATCAAGTGGAGGATCCAGTTCTTGGAGAAGAGCATCAGAAAATTCGACTTCAACCCTACCGGAATCTCCACCATCGTTCAGGTCAACGATCTCAAAAACTCTCCCGGACTCTTCAAGAGGGAGCACAACCAGGTCACCAACCAGGCTCTTGAATTGCTTCAGGACAACTACCCTGAGTTCGTTGCCAAACAGGTGTTTATCAATGTGCCATGGTGGTACCTTGCTTTCAATAGGATGATCAGCCCCTTCCTGACCCAGAGGACCAAGAGCAAGTTTGTGTTTGCTGGTCCATCCAAATCCGCCGAGACCCTATTCAAATACATAGTTCCAGAACATGTGCCAGTTCAGTATGGTGGTCTAAGCAAGGAAGGCGAGTGTGAATTCACCACAGCCGACCCTGTCACAGAGGTTACTGTTAAACCAGCTTGCAAACACACCGTTGAAATCCCAGTTTCTGAGAGTGGTGTTCTTGTTTGGGAAGTGAGAGTATTGGCTTGGGATGTGAGCTACGGAGCCGAGTTTGTGCCAAGTGCTGAGGATGCTTACACAATCATATTGCAAAAGACTAGAAAGGTTGCCCCAAGCGATGAGCCAGTGATCTCGAACAGCTTCAAGATCGGCGAGCCAGGGAAGGTTGTGCTCACCATTGACAACCAAAGTTCCAAGAAGAAAAAGCTCCTCTACAGGTCCAAGACCAAGCCTTCCTCTGATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000902 GO:0000904 GO:0002020 GO:0003006 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005794 GO:0005886 GO:0005911 GO:0008150 GO:0009506 GO:0009507 GO:0009536 GO:0009653 GO:0009826 GO:0009856 GO:0009860 GO:0009932 GO:0009987 GO:0012505 GO:0016020 GO:0016043 GO:0016049 GO:0019899 GO:0022414 GO:0030054 GO:0030154 GO:0032501 GO:0032502 GO:0032989 GO:0040007 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0044706 GO:0048046 GO:0048468 GO:0048588 GO:0048589 GO:0048856 GO:0048868 GO:0048869 GO:0051704 GO:0055044 GO:0060560 GO:0071840 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CRAL_TRIO CRAL_TRIO_N

Protein Analysis

598

Amino Acids

66.73

Weight (kDa)

4.76

Isoelectric Point (pI)

51.54

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CRAL_TRIO_N	PF03765	270 - 296	1e-08	CRAL/TRIO, N-terminal domain
CRAL_TRIO	PF00650	319 - 480	3.2e-29	CRAL/TRIO domain
GOLD_PATL1_C	PF25099	501 - 585	8.6e-38	Patellin-1-like, C-terminal GOLD domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012627)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g31750
malus_domestica	MD08G1218200.v1.1 MD15G1406000.v1.1
prunus_persica	Prupe.1G555200_v2.0.a1 Prupe.1G555200_v2.0.a1
pyrus_communis	pycom08g18910 pycom15g36280
rosa_chinensis	RchiOBHm_Chr7g0227641
rosa_laevigata	RLG00000001631
rosa_multiflora	Rmu_co8489989.1_g000001 Rmu_sc0041066.1_g000001
rosa_roxburghii	Rroxscaffold_3G00231990
rosa_rugosa	Rorug07G0242500 Rorug07G0242600
rosa_samantha	Rh7AG396100 Rh7BG377700 Rh7CG414800 Rh7DG391700
rosa_wichuraiana	Rw7G032930

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	822
Acc65I	GGTACC	1 cut(s)	1299
AccB1I	GGYRCC	5 cut(s)	43, 76, 466, 596, 1299
AccB7I	CCANNNNNTGG	1 cut(s)	1105
AccI	GTMKAC	2 cut(s)	777, 981
AccII	CGCG	1 cut(s)	338
AccIII	TCCGGA	1 cut(s)	649
AclWI	GGATC	4 cut(s)	194, 923, 1090, 1103
AcoI	YGGCCR	1 cut(s)	633
AcsI	RAATTY	2 cut(s)	1124, 1463
AcuI	CTGAAG	4 cut(s)	314, 498, 705, 1226
AcyI	GRCGYC	6 cut(s)	77, 597, 819, 867, 921, 978
AdeI	CACNNNGTG	2 cut(s)	50, 1000
AfaI	GTAC	2 cut(s)	1043, 1301
AfiI	CCNNNNNNNGG	6 cut(s)	649, 799, 800, 897, 1033, 1105
AflIII	ACRYGT	3 cut(s)	1011, 1050, 1417
AgsI	TTSAA	9 cut(s)	232, 856, 1135, 1198, 1235, 1312, 1399, 1526, 1696
AjnI	CCWGG	4 cut(s)	306, 1212, 1224, 1708
AjuI	GAANNNNNNNTTGG	2 cut(s)	924, 956
Alw21I	GWGCWC	3 cut(s)	261, 1209, 1725
Alw26I	GTCTC	3 cut(s)	563, 617, 1382
AlwI	GGATC	4 cut(s)	194, 923, 1090, 1103
AlwNI	CAGNNNCTG	1 cut(s)	1538
Ama87I	CYCGRG	1 cut(s)	263
Aor13HI	TCCGGA	1 cut(s)	649
AoxI	GGCC	5 cut(s)	135, 438, 633, 741, 991
ApeKI	GCWGC	5 cut(s)	26, 298, 425, 749, 813
ApoI	RAATTY	2 cut(s)	1124, 1463
Asp700I	GAANNNNTTC	3 cut(s)	1052, 1239, 1691
Asp718I	GGTACC	1 cut(s)	1299
AspLEI	GCGC	5 cut(s)	79, 340, 599, 813, 903
AspS9I	GGNCC	6 cut(s)	439, 742, 1074, 1344, 1370, 1770
AsuC2I	CCSGG	2 cut(s)	746, 1188
AsuHPI	GGTGA	8 cut(s)	266, 325, 815, 871, 1031, 1210, 1459, 1717
AvaI	CYCGRG	1 cut(s)	263
AvaII	GGWCC	4 cut(s)	1074, 1344, 1370, 1770
AxyI	CCTNAGG	2 cut(s)	435, 839
BamHI	GGATCC	1 cut(s)	1095
BanI	GGYRCC	5 cut(s)	43, 76, 466, 596, 1299
BanII	GRGCYC	1 cut(s)	261
BauI	CACGAG	2 cut(s)	14, 326
Bbv12I	GWGCWC	3 cut(s)	261, 1209, 1725
BbvCI	CCTCAGC	3 cut(s)	6, 186, 1617
BbvI	GCAGC	5 cut(s)	13, 310, 412, 736, 825
BccI	CCATC	2 cut(s)	1163, 1381
BceAI	ACGGC	4 cut(s)	131, 610, 726, 991
BcgI	CGANNNNNNTGC	4 cut(s)	5, 39, 892, 926
BciT130I	CCWGG	4 cut(s)	308, 1214, 1226, 1710
BclI	TGATCA	2 cut(s)	879, 1320
BcnI	CCSGG	2 cut(s)	746, 1188
BcoDI	GTCTC	3 cut(s)	563, 617, 1382
BfaI	CTAG	2 cut(s)	846, 1650
BfmI	CTRYAG	1 cut(s)	1765
BfoI	RGCGCY	2 cut(s)	80, 600
Bme1390I	CCNGG	6 cut(s)	308, 746, 1188, 1214, 1226, 1710
Bme18I	GGWCC	4 cut(s)	1074, 1344, 1370, 1770
BmeT110I	CYCGRG	1 cut(s)	263
BmgT120I	GGNCC	6 cut(s)	439, 742, 1074, 1344, 1370, 1770
BmrFI	CCNGG	6 cut(s)	308, 746, 1188, 1214, 1226, 1710
BmrI	ACTGGG	2 cut(s)	961, 1526
BmsI	GCATC	2 cut(s)	1125, 1612
BmuI	ACTGGG	2 cut(s)	961, 1526
BpmI	CTGGAG	2 cut(s)	305, 471
Bpu10I	CCTNAGC	3 cut(s)	6, 186, 1617
BpuEI	CTTGAG	1 cut(s)	815
BpuMI	CCSGG	2 cut(s)	746, 1188
BsaHI	GRCGYC	6 cut(s)	77, 597, 819, 867, 921, 978
BsaI	GGTCTC	2 cut(s)	617, 1382
BsaJI	CCNNGG	6 cut(s)	147, 180, 579, 744, 1292, 1709
BsaWI	WCCGGW	3 cut(s)	649, 757, 1142
BsaXI	ACNNNNNCTCC	2 cut(s)	32, 62
Bsc4I	CCNNNNNNNGG	6 cut(s)	649, 799, 800, 897, 1033, 1105
Bse118I	RCCGGY	2 cut(s)	355, 376
Bse1I	ACTGG	5 cut(s)	956, 1099, 1424, 1532, 1676
Bse21I	CCTNAGG	2 cut(s)	435, 839
BseAI	TCCGGA	1 cut(s)	649
BseBI	CCWGG	4 cut(s)	308, 1214, 1226, 1710
BseDI	CCNNGG	6 cut(s)	147, 180, 579, 744, 1292, 1709
BseGI	GGATG	5 cut(s)	303, 1323, 1373, 1588, 1627
BseLI	CCNNNNNNNGG	6 cut(s)	649, 799, 800, 897, 1033, 1105
BseMII	CTCAG	8 cut(s)	177, 230, 426, 549, 830, 1248, 1530, 1608
BseNI	ACTGG	5 cut(s)	956, 1099, 1424, 1532, 1676
BseXI	GCAGC	5 cut(s)	13, 310, 412, 736, 825
Bsh1236I	CGCG	1 cut(s)	338
Bsh1285I	CGRYCG	1 cut(s)	663
BshFI	GGCC	5 cut(s)	137, 440, 635, 743, 993
BshNI	GGYRCC	5 cut(s)	43, 76, 466, 596, 1299
BsiEI	CGRYCG	1 cut(s)	663
BsiHKAI	GWGCWC	3 cut(s)	261, 1209, 1725
BsiHKCI	CYCGRG	1 cut(s)	263
BslFI	GGGAC	1 cut(s)	626
BslI	CCNNNNNNNGG	6 cut(s)	649, 799, 800, 897, 1033, 1105
BsmAI	GTCTC	3 cut(s)	563, 617, 1382
BsmFI	GGGAC	1 cut(s)	626
BsnI	GGCC	5 cut(s)	137, 440, 635, 743, 993
Bso31I	GGTCTC	2 cut(s)	617, 1382
BsoBI	CYCGRG	1 cut(s)	263
Bsp1286I	GDGCHC	3 cut(s)	261, 1209, 1725
Bsp13I	TCCGGA	1 cut(s)	649
Bsp143I	GATC	9 cut(s)	199, 543, 879, 915, 1095, 1171, 1320, 1680, 1698
Bsp19I	CCATGG	1 cut(s)	1292
BspANI	GGCC	5 cut(s)	137, 440, 635, 743, 993
BspCNI	CTCAG	8 cut(s)	178, 229, 427, 550, 831, 1249, 1531, 1609
BspEI	TCCGGA	1 cut(s)	649
BspFNI	CGCG	1 cut(s)	338
BspPI	GGATC	4 cut(s)	194, 923, 1090, 1103
BspQI	GCTCTTC	1 cut(s)	1106
BspT107I	GGYRCC	5 cut(s)	43, 76, 466, 596, 1299
BspTNI	GGTCTC	2 cut(s)	617, 1382
BsrFI	RCCGGY	2 cut(s)	355, 376
BsrI	ACTGG	5 cut(s)	956, 1099, 1424, 1532, 1676
BssAI	RCCGGY	2 cut(s)	355, 376
BssECI	CCNNGG	6 cut(s)	147, 180, 579, 744, 1292, 1709
BssMI	GATC	9 cut(s)	199, 543, 879, 915, 1095, 1171, 1320, 1680, 1698
BssNI	GRCGYC	6 cut(s)	77, 597, 819, 867, 921, 978
BssSI	CACGAG	2 cut(s)	14, 326
BssT1I	CCWWGG	3 cut(s)	180, 579, 1292
Bst2BI	CACGAG	2 cut(s)	14, 326
Bst2UI	CCWGG	4 cut(s)	308, 1214, 1226, 1710
Bst4CI	ACNGT	7 cut(s)	48, 574, 607, 892, 1074, 1498, 1522
Bst6I	CTCTTC	9 cut(s)	186, 231, 384, 531, 732, 927, 1059, 1106, 1199
BstACI	GRCGYC	6 cut(s)	77, 597, 819, 867, 921, 978
BstC8I	GCNNGC	7 cut(s)	24, 84, 144, 177, 378, 1510, 1706
BstDSI	CCRYGG	2 cut(s)	147, 1292
BstEII	GGTNACC	1 cut(s)	1216
BstF5I	GGATG	5 cut(s)	303, 1323, 1373, 1588, 1627
BstFNI	CGCG	1 cut(s)	338
BstH2I	RGCGCY	2 cut(s)	80, 600
BstHHI	GCGC	5 cut(s)	79, 340, 599, 813, 903
BstKTI	GATC	9 cut(s)	202, 546, 882, 918, 1098, 1174, 1323, 1683, 1701
BstMAI	GTCTC	3 cut(s)	563, 617, 1382
BstMBI	GATC	9 cut(s)	199, 543, 879, 915, 1095, 1171, 1320, 1680, 1698
BstMCI	CGRYCG	1 cut(s)	663
BstNI	CCWGG	4 cut(s)	308, 1214, 1226, 1710
BstNSI	RCATGY	1 cut(s)	1421
BstPI	GGTNACC	1 cut(s)	1216
BstSCI	CCNGG	6 cut(s)	306, 744, 1186, 1212, 1224, 1708
BstSFI	CTRYAG	1 cut(s)	1765
BstUI	CGCG	1 cut(s)	338
BstV1I	GCAGC	5 cut(s)	13, 310, 412, 736, 825
BstX2I	RGATCY	1 cut(s)	1095
BstXI	CCANNNNNNTGG	1 cut(s)	607
BstYI	RGATCY	1 cut(s)	1095
Bsu36I	CCTNAGG	2 cut(s)	435, 839
BsuRI	GGCC	5 cut(s)	137, 440, 635, 743, 993
BtgI	CCRYGG	2 cut(s)	147, 1292
BtgZI	GCGATG	1 cut(s)	1683
BtsCI	GGATG	5 cut(s)	303, 1323, 1373, 1588, 1627
BtsIMutI	CAGTG	3 cut(s)	949, 1056, 1683
Cac8I	GCNNGC	7 cut(s)	24, 84, 144, 177, 378, 1510, 1706
CaiI	CAGNNNCTG	1 cut(s)	1538
CfoI	GCGC	5 cut(s)	79, 340, 599, 813, 903
Cfr10I	RCCGGY	2 cut(s)	355, 376
Cfr13I	GGNCC	6 cut(s)	439, 742, 1074, 1344, 1370, 1770
CseI	GACGC	3 cut(s)	875, 929, 967
CsiI	ACCWGGT	1 cut(s)	1212
Csp6I	GTAC	2 cut(s)	1042, 1300
CviAII	CATG	3 cut(s)	877, 1293, 1418
CviQI	GTAC	2 cut(s)	1042, 1300
DinI	GGCGCC	2 cut(s)	78, 598
DpnI	GATC	9 cut(s)	201, 545, 881, 917, 1097, 1173, 1322, 1682, 1700
DpnII	GATC	9 cut(s)	199, 543, 879, 915, 1095, 1171, 1320, 1680, 1698
DraIII	CACNNNGTG	2 cut(s)	50, 1000
EaeI	YGGCCR	1 cut(s)	633
Eam1104I	CTCTTC	9 cut(s)	186, 231, 384, 531, 732, 927, 1059, 1106, 1199
EarI	CTCTTC	9 cut(s)	186, 231, 384, 531, 732, 927, 1059, 1106, 1199
EciI	GGCGGA	4 cut(s)	182, 339, 728, 1372
Ecl136II	GAGCTC	1 cut(s)	259
Eco130I	CCWWGG	3 cut(s)	180, 579, 1292
Eco24I	GRGCYC	1 cut(s)	261
Eco31I	GGTCTC	2 cut(s)	617, 1382
Eco47I	GGWCC	4 cut(s)	1074, 1344, 1370, 1770
Eco53kI	GAGCTC	1 cut(s)	259
Eco57I	CTGAAG	4 cut(s)	314, 498, 705, 1226
Eco81I	CCTNAGG	2 cut(s)	435, 839
Eco88I	CYCGRG	1 cut(s)	263
Eco91I	GGTNACC	1 cut(s)	1216
EcoICRI	GAGCTC	1 cut(s)	259
EcoO109I	RGGNCCY	2 cut(s)	439, 742
EcoO65I	GGTNACC	1 cut(s)	1216
EcoRI	GAATTC	1 cut(s)	1463
EcoRII	CCWGG	4 cut(s)	306, 1212, 1224, 1708
EcoT14I	CCWWGG	3 cut(s)	180, 579, 1292
EcoT38I	GRGCYC	1 cut(s)	261
EgeI	GGCGCC	2 cut(s)	78, 598
EheI	GGCGCC	2 cut(s)	78, 598
ErhI	CCWWGG	3 cut(s)	180, 579, 1292
FaeI	CATG	3 cut(s)	880, 1296, 1421
FaiI	YATR	7 cut(s)	629, 878, 1294, 1406, 1419, 1434, 1637
FalI	AAGNNNNNCTT	4 cut(s)	854, 886, 924, 956
FaqI	GGGAC	1 cut(s)	626
FatI	CATG	3 cut(s)	876, 1292, 1417
FbaI	TGATCA	2 cut(s)	879, 1320
FblI	GTMKAC	2 cut(s)	777, 981
FokI	GGATG	5 cut(s)	290, 1330, 1360, 1595, 1634
FriOI	GRGCYC	1 cut(s)	261
FspBI	CTAG	2 cut(s)	846, 1650
GlaI	GCGC	5 cut(s)	78, 339, 598, 812, 902
GsuI	CTGGAG	2 cut(s)	305, 471
HaeII	RGCGCY	2 cut(s)	80, 600
HaeIII	GGCC	5 cut(s)	137, 440, 635, 743, 993
HgaI	GACGC	3 cut(s)	875, 929, 967
HhaI	GCGC	5 cut(s)	79, 340, 599, 813, 903
Hin1I	GRCGYC	6 cut(s)	77, 597, 819, 867, 921, 978
Hin1II	CATG	3 cut(s)	880, 1296, 1421
Hin6I	GCGC	5 cut(s)	77, 338, 597, 811, 901
HinP1I	GCGC	5 cut(s)	77, 338, 597, 811, 901
HincII	GTYRAC	3 cut(s)	586, 982, 1168
HindII	GTYRAC	3 cut(s)	586, 982, 1168
HindIII	AAGCTT	1 cut(s)	492
HinfI	GANTC	7 cut(s)	68, 346, 703, 789, 796, 1146, 1191
HphI	GGTGA	8 cut(s)	266, 325, 815, 871, 1031, 1210, 1459, 1717
Hpy166II	GTNNAC	7 cut(s)	333, 586, 778, 969, 982, 1056, 1168
Hpy188I	TCNGA	4 cut(s)	73, 1121, 1540, 1792
Hpy8I	GTNNAC	7 cut(s)	333, 586, 778, 969, 982, 1056, 1168
Hpy99I	CGWCG	4 cut(s)	215, 821, 923, 983
HpyCH4III	ACNGT	7 cut(s)	48, 574, 607, 892, 1074, 1498, 1522
HpyCH4IV	ACGT	5 cut(s)	246, 780, 819, 1011, 1052
HpyCH4V	TGCA	2 cut(s)	1512, 1642
HpySE526I	ACGT	5 cut(s)	246, 780, 819, 1011, 1052
Hsp92I	GRCGYC	6 cut(s)	77, 597, 819, 867, 921, 978
Hsp92II	CATG	3 cut(s)	880, 1296, 1421
HspAI	GCGC	5 cut(s)	77, 338, 597, 811, 901
KasI	GGCGCC	2 cut(s)	76, 596
Kpn2I	TCCGGA	1 cut(s)	649
KpnI	GGTACC	1 cut(s)	1303
KroI	GCCGGC	1 cut(s)	376
KroNI	GCCGGC	1 cut(s)	378
Ksp22I	TGATCA	2 cut(s)	879, 1320
Kzo9I	GATC	9 cut(s)	199, 543, 879, 915, 1095, 1171, 1320, 1680, 1698
LguI	GCTCTTC	1 cut(s)	1106
Lsp1109I	GCAGC	5 cut(s)	13, 310, 412, 736, 825
LweI	GCATC	2 cut(s)	1125, 1612
MabI	ACCWGGT	1 cut(s)	1212
MaeI	CTAG	2 cut(s)	846, 1650
MaeII	ACGT	5 cut(s)	246, 780, 819, 1011, 1052
MaeIII	GTNAC	7 cut(s)	97, 553, 574, 803, 1216, 1483, 1492
MalI	GATC	9 cut(s)	201, 545, 881, 917, 1097, 1173, 1322, 1682, 1700
MboI	GATC	9 cut(s)	199, 543, 879, 915, 1095, 1171, 1320, 1680, 1698
MflI	RGATCY	1 cut(s)	1095
MhlI	GDGCHC	3 cut(s)	261, 1209, 1725
MluCI	AATT	3 cut(s)	1124, 1235, 1463
Mly113I	GGCGCC	2 cut(s)	77, 597
MlyI	GAGTC	4 cut(s)	77, 340, 697, 1185
MmeI	TCCRAC	2 cut(s)	51, 731
MroI	TCCGGA	1 cut(s)	649
MroNI	GCCGGC	1 cut(s)	376
MroXI	GAANNNNTTC	3 cut(s)	1052, 1239, 1691
MseI	TTAA	3 cut(s)	360, 1500, 1795
MspR9I	CCNGG	6 cut(s)	308, 746, 1188, 1214, 1226, 1710
MvaI	CCWGG	4 cut(s)	308, 1214, 1226, 1710
MvnI	CGCG	1 cut(s)	338
NaeI	GCCGGC	1 cut(s)	378
NarI	GGCGCC	2 cut(s)	77, 597
NciI	CCSGG	2 cut(s)	746, 1188
NcoI	CCATGG	1 cut(s)	1292
NdeII	GATC	9 cut(s)	199, 543, 879, 915, 1095, 1171, 1320, 1680, 1698
NgoMIV	GCCGGC	1 cut(s)	376
NlaIII	CATG	3 cut(s)	880, 1296, 1421
NmeAIII	GCCGAG	4 cut(s)	112, 454, 1411, 1624
NmuCI	GTSAC	5 cut(s)	97, 553, 803, 1216, 1483
NspI	RCATGY	1 cut(s)	1421
PciI	ACATGT	1 cut(s)	1417
PciSI	GCTCTTC	1 cut(s)	1106
PcsI	WCGNNNNNNNCGW	1 cut(s)	813
PdiI	GCCGGC	1 cut(s)	378
PdmI	GAANNNNTTC	3 cut(s)	1052, 1239, 1691
PfeI	GAWTC	3 cut(s)	789, 796, 1146
PflFI	GACNNNGTC	1 cut(s)	1481
PflMI	CCANNNNNTGG	1 cut(s)	1105
PfoI	TCCNGGA	2 cut(s)	306, 1186
PleI	GAGTC	4 cut(s)	76, 340, 697, 1185
PluTI	GGCGCC	2 cut(s)	80, 600
PpsI	GAGTC	4 cut(s)	76, 340, 697, 1185
PscI	ACATGT	1 cut(s)	1417
Psp124BI	GAGCTC	1 cut(s)	261
Psp6I	CCWGG	4 cut(s)	306, 1212, 1224, 1708
PspEI	GGTNACC	1 cut(s)	1216
PspGI	CCWGG	4 cut(s)	306, 1212, 1224, 1708
PspPI	GGNCC	6 cut(s)	439, 742, 1074, 1344, 1370, 1770
PstNI	CAGNNNCTG	1 cut(s)	1538
PsuI	RGATCY	1 cut(s)	1095
PsyI	GACNNNGTC	1 cut(s)	1481
RsaI	GTAC	2 cut(s)	1043, 1301
RsaNI	GTAC	2 cut(s)	1042, 1300
SacI	GAGCTC	1 cut(s)	261
SalI	GTCGAC	1 cut(s)	980
SapI	GCTCTTC	1 cut(s)	1106
SaqAI	TTAA	3 cut(s)	360, 1500, 1795
Sau3AI	GATC	9 cut(s)	199, 543, 879, 915, 1095, 1171, 1320, 1680, 1698
Sau96I	GGNCC	6 cut(s)	439, 742, 1074, 1344, 1370, 1770
SchI	GAGTC	4 cut(s)	77, 340, 697, 1185
ScrFI	CCNGG	6 cut(s)	308, 746, 1188, 1214, 1226, 1710
SduI	GDGCHC	3 cut(s)	261, 1209, 1725
SexAI	ACCWGGT	1 cut(s)	1212
SfaNI	GCATC	2 cut(s)	1125, 1612
SfcI	CTRYAG	1 cut(s)	1765
SfoI	GGCGCC	2 cut(s)	78, 598
SinI	GGWCC	4 cut(s)	1074, 1344, 1370, 1770
SmlI	CTYRAG	1 cut(s)	830
SmoI	CTYRAG	1 cut(s)	830
Sse9I	AATT	3 cut(s)	1124, 1235, 1463
SspDI	GGCGCC	2 cut(s)	76, 596
SspMI	CTAG	2 cut(s)	846, 1650
SstI	GAGCTC	1 cut(s)	261
StyD4I	CCNGG	6 cut(s)	306, 744, 1186, 1212, 1224, 1708
StyI	CCWWGG	3 cut(s)	180, 579, 1292
TaaI	ACNGT	7 cut(s)	48, 574, 607, 892, 1074, 1498, 1522
TaiI	ACGT	5 cut(s)	249, 783, 822, 1014, 1055
TaqI	TCGA	5 cut(s)	696, 918, 981, 1128, 1685
TaqII	GACCGA	2 cut(s)	116, 677
TasI	AATT	3 cut(s)	1124, 1235, 1463
TauI	GCSGC	7 cut(s)	82, 271, 343, 355, 638, 659, 692
TfiI	GAWTC	3 cut(s)	789, 796, 1146
Tru1I	TTAA	3 cut(s)	360, 1500, 1795
Tru9I	TTAA	3 cut(s)	360, 1500, 1795
TscAI	CASTG	3 cut(s)	956, 1063, 1683
TseFI	GTSAC	5 cut(s)	97, 553, 803, 1216, 1483
TseI	GCWGC	5 cut(s)	26, 298, 425, 749, 813
Tsp45I	GTSAC	5 cut(s)	97, 553, 803, 1216, 1483
TspDTI	ATGAA	2 cut(s)	1072, 1077
TspGWI	ACGGA	1 cut(s)	1608
TspRI	CASTG	3 cut(s)	956, 1063, 1683
Tth111I	GACNNNGTC	1 cut(s)	1481
Van91I	CCANNNNNTGG	1 cut(s)	1105
VpaK11BI	GGWCC	4 cut(s)	1074, 1344, 1370, 1770
XapI	RAATTY	2 cut(s)	1124, 1463
XceI	RCATGY	1 cut(s)	1421
XcmI	CCANNNNNNNNNTGG	1 cut(s)	145
XmiI	GTMKAC	2 cut(s)	777, 981
XmnI	GAANNNNTTC	3 cut(s)	1052, 1239, 1691
XspI	CTAG	2 cut(s)	846, 1650
ZraI	GACGTC	1 cut(s)	820

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.