Rmu_ssc0000078.1_g000006

Plastocyanin-like domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_ssc0000078.1
OG0014734
Physical Location & Seq
Forward (+)
28584 .. 29425
842 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 594 bp
atggctctggttagaatgttgctgttggcagcaatcgtctgctgcttcttgatgggatcagccactgcaaattatccaatggcgcacattgttggaggaagcttcggatggagcgtacctgagaacaacaaaaccttctatgctgattggagtgcccctagaacctttggggttggcgataaacttgttttcccattcagaactggcaccggcaatgtggtgacggtggacaaggcggactacgaggactgcactcaaaaaactacgatcgccttttactacctgggaccaacaactatcgtgctcagcaaaccaggagactactacttctatagcggtactggcaagcactgcgaggctggccaaaagctccacgtcaaagttgaagaaggaaagcagggatcttccggatctcagttttcattcaatatcaaactcggtgctgctgccccgaaggccttgtccccggcaccttctaatgcggatgctgcagctgctcctgctcctgctccaaaggcctcagccgccgccaccattcaaaatgttggcatcgcttctggccttttcaccatcctattttctttgttcatataa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005623 GO:0005886 GO:0005911 GO:0009506 GO:0016020 GO:0030054 GO:0031224 GO:0031225 GO:0031226 GO:0044425 GO:0044459 GO:0044464 GO:0046658 GO:0055044 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cu_bind_like

Protein Analysis

197

Amino Acids

20.71

Weight (kDa)

8.63

Isoelectric Point (pI)

36.39

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cu_bind_like PF02298 37 - 122 1.9e-20 Plastocyanin-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014734)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g03930
malus_domestica MD06G1100600.v1.1 MD14G1120500.v1.1
prunus_persica Prupe.5G114200_v2.0.a1
pyrus_communis pycom06g09590
rosa_chinensis RchiOBHm_Chr7g0195571
rosa_laevigata RLG00000004108
rosa_multiflora Rmu_co8275177.1_g000001 Rmu_sc0017741.1_g000001 Rmu_ssc0000078.1_g000006
rosa_roxburghii Rroxscaffold_3G00260340
rosa_rugosa Rorug07G0024300
rosa_samantha Rh7AG152000 Rh7BG153700 Rh7CG157200 Rh7DG153000
rosa_wichuraiana Rw7G012990

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 206, 469
AccIII TCCGGA 1 cut(s) 407
AciI CCGC 5 cut(s) 236, 336, 482, 525, 528
AclWI GGATC 3 cut(s) 64, 409, 418
AcoI YGGCCR 1 cut(s) 361
AfaI GTAC 2 cut(s) 117, 340
AgsI TTSAA 3 cut(s) 386, 427, 539
AjiI CACGTC 1 cut(s) 376
AjnI CCWGG 2 cut(s) 282, 313
AluBI AGCT 3 cut(s) 102, 370, 494
AluI AGCT 3 cut(s) 102, 370, 494
Alw21I GWGCWC 1 cut(s) 306
Alw26I GTCTC 1 cut(s) 312
AlwI GGATC 3 cut(s) 64, 409, 418
AlwNI CAGNNNCTG 1 cut(s) 65
Aor13HI TCCGGA 1 cut(s) 407
AoxI GGCC 4 cut(s) 361, 456, 516, 559
ApeKI GCWGC 7 cut(s) 29, 42, 443, 446, 488, 491, 494
ArsI GACNNNNNNTTYG 2 cut(s) 446, 478
AspLEI GCGC 1 cut(s) 85
AspS9I GGNCC 1 cut(s) 287
AsuC2I CCSGG 1 cut(s) 467
AsuHPI GGTGA 2 cut(s) 232, 559
AvaII GGWCC 1 cut(s) 287
BaeGI GKGCMC 1 cut(s) 157
BalI TGGCCA 1 cut(s) 363
BanI GGYRCC 2 cut(s) 206, 469
Bbv12I GWGCWC 1 cut(s) 306
BbvCI CCTCAGC 1 cut(s) 520
BbvI GCAGC 7 cut(s) 29, 41, 430, 433, 475, 481, 503
BccI CCATC 3 cut(s) 46, 102, 578
BciT130I CCWGG 2 cut(s) 284, 315
BcnI CCSGG 1 cut(s) 467
BcoDI GTCTC 1 cut(s) 312
BfaI CTAG 1 cut(s) 159
BfmI CTRYAG 2 cut(s) 331, 489
BglI GCCNNNNNGGC 1 cut(s) 455
BisI GCNGC 9 cut(s) 30, 43, 444, 447, 489, 492, 495, 525, 528
BlpI GCTNAGC 1 cut(s) 305
BlsI GCNGC 9 cut(s) 31, 44, 445, 448, 490, 493, 496, 526, 529
Bme1390I CCNGG 3 cut(s) 284, 315, 467
Bme18I GGWCC 1 cut(s) 287
BmgBI CACGTC 1 cut(s) 376
BmgT120I GGNCC 1 cut(s) 287
BmiI GGNNCC 3 cut(s) 208, 288, 471
BmrFI CCNGG 3 cut(s) 284, 315, 467
BmsI GCATC 2 cut(s) 475, 558
Bpu10I CCTNAGC 1 cut(s) 520
Bpu1102I GCTNAGC 1 cut(s) 305
BpuMI CCSGG 1 cut(s) 467
BsaJI CCNNGG 2 cut(s) 283, 465
BsaWI WCCGGW 1 cut(s) 407
Bse118I RCCGGY 1 cut(s) 209
Bse1I ACTGG 2 cut(s) 208, 346
Bse3DI GCAATG 1 cut(s) 220
BseAI TCCGGA 1 cut(s) 407
BseBI CCWGG 2 cut(s) 284, 315
BseDI CCNNGG 2 cut(s) 283, 465
BseGI GGATG 3 cut(s) 113, 490, 570
BseMI GCAATG 1 cut(s) 220
BseMII CTCAG 4 cut(s) 111, 319, 428, 534
BseNI ACTGG 2 cut(s) 208, 346
BseSI GKGCMC 1 cut(s) 157
BseXI GCAGC 7 cut(s) 29, 41, 430, 433, 475, 481, 503
BsgI GTGCAG 1 cut(s) 235
Bsh1285I CGRYCG 1 cut(s) 270
BshFI GGCC 4 cut(s) 363, 458, 518, 561
BshNI GGYRCC 2 cut(s) 206, 469
BsiEI CGRYCG 1 cut(s) 270
BsiHKAI GWGCWC 1 cut(s) 306
BsiSI CCGG 3 cut(s) 210, 408, 467
BslFI GGGAC 2 cut(s) 300, 448
BsmAI GTCTC 1 cut(s) 312
BsmFI GGGAC 2 cut(s) 300, 448
BsnI GGCC 4 cut(s) 363, 458, 518, 561
Bsp1286I GDGCHC 2 cut(s) 157, 306
Bsp13I TCCGGA 1 cut(s) 407
Bsp143I GATC 4 cut(s) 56, 267, 401, 410
Bsp1720I GCTNAGC 1 cut(s) 305
BspACI CCGC 5 cut(s) 236, 336, 482, 525, 528
BspANI GGCC 4 cut(s) 363, 458, 518, 561
BspCNI CTCAG 4 cut(s) 112, 318, 427, 533
BspEI TCCGGA 1 cut(s) 407
BspLI GGNNCC 3 cut(s) 208, 288, 471
BspMAI CTGCAG 1 cut(s) 493
BspPI GGATC 3 cut(s) 64, 409, 418
BspT107I GGYRCC 2 cut(s) 206, 469
BsrDI GCAATG 1 cut(s) 220
BsrFI RCCGGY 1 cut(s) 209
BsrI ACTGG 2 cut(s) 208, 346
BssAI RCCGGY 1 cut(s) 209
BssECI CCNNGG 2 cut(s) 283, 465
BssMI GATC 4 cut(s) 56, 267, 401, 410
Bst2UI CCWGG 2 cut(s) 284, 315
Bst4CI ACNGT 1 cut(s) 226
BstAPI GCANNNNNTGC 1 cut(s) 351
BstC8I GCNNGC 2 cut(s) 347, 361
BstDEI CTNAG 4 cut(s) 120, 305, 414, 520
BstF5I GGATG 3 cut(s) 113, 490, 570
BstHHI GCGC 1 cut(s) 85
BstKTI GATC 4 cut(s) 59, 270, 404, 413
BstMAI GTCTC 1 cut(s) 312
BstMBI GATC 4 cut(s) 56, 267, 401, 410
BstMCI CGRYCG 1 cut(s) 270
BstMWI GCNNNNNNNGC 9 cut(s) 342, 351, 360, 455, 488, 494, 500, 515, 524
BstNI CCWGG 2 cut(s) 284, 315
BstSCI CCNGG 3 cut(s) 282, 313, 465
BstSFI CTRYAG 2 cut(s) 331, 489
BstSLI GKGCMC 1 cut(s) 157
BstV1I GCAGC 7 cut(s) 29, 41, 430, 433, 475, 481, 503
BstX2I RGATCY 2 cut(s) 401, 410
BstYI RGATCY 2 cut(s) 401, 410
BsuRI GGCC 4 cut(s) 363, 458, 518, 561
BtgZI GCGATG 1 cut(s) 535
BtrI CACGTC 1 cut(s) 376
BtsCI GGATG 3 cut(s) 113, 490, 570
BtsI GCAGTG 2 cut(s) 63, 349
BtsIMutI CAGTG 2 cut(s) 63, 349
Cac8I GCNNGC 2 cut(s) 347, 361
CaiI CAGNNNCTG 1 cut(s) 65
CfoI GCGC 1 cut(s) 85
Cfr10I RCCGGY 1 cut(s) 209
Cfr13I GGNCC 1 cut(s) 287
Csp6I GTAC 2 cut(s) 116, 339
CviQI GTAC 2 cut(s) 116, 339
DdeI CTNAG 4 cut(s) 120, 305, 414, 520
DpnI GATC 4 cut(s) 58, 269, 403, 412
DpnII GATC 4 cut(s) 56, 267, 401, 410
EaeI YGGCCR 1 cut(s) 361
EciI GGCGGA 1 cut(s) 251
Eco147I AGGCCT 2 cut(s) 458, 518
Eco47I GGWCC 1 cut(s) 287
EcoRII CCWGG 2 cut(s) 282, 313
FaiI YATR 4 cut(s) 141, 333, 590, 592
FaqI GGGAC 2 cut(s) 300, 448
Fnu4HI GCNGC 9 cut(s) 30, 43, 444, 447, 489, 492, 495, 525, 528
FokI GGATG 3 cut(s) 120, 497, 557
Fsp4HI GCNGC 9 cut(s) 30, 43, 444, 447, 489, 492, 495, 525, 528
FspBI CTAG 1 cut(s) 159
GlaI GCGC 1 cut(s) 84
GluI GCNGC 9 cut(s) 30, 43, 444, 447, 489, 492, 495, 525, 528
HaeIII GGCC 4 cut(s) 363, 458, 518, 561
HapII CCGG 3 cut(s) 210, 408, 467
HhaI GCGC 1 cut(s) 85
Hin6I GCGC 1 cut(s) 83
HinP1I GCGC 1 cut(s) 83
HindIII AAGCTT 1 cut(s) 100
HpaII CCGG 3 cut(s) 210, 408, 467
HphI GGTGA 2 cut(s) 232, 559
Hpy166II GTNNAC 1 cut(s) 229
Hpy188I TCNGA 2 cut(s) 107, 200
Hpy188III TCNNGA 2 cut(s) 49, 408
Hpy8I GTNNAC 1 cut(s) 229
HpyAV CCTTC 4 cut(s) 145, 383, 448, 483
HpyCH4III ACNGT 1 cut(s) 226
HpyCH4IV ACGT 1 cut(s) 375
HpyCH4V TGCA 3 cut(s) 68, 252, 491
HpyF10VI GCNNNNNNNGC 9 cut(s) 342, 351, 360, 455, 488, 494, 500, 515, 524
HpyF3I CTNAG 4 cut(s) 120, 305, 414, 520
HpySE526I ACGT 1 cut(s) 375
HspAI GCGC 1 cut(s) 83
Kpn2I TCCGGA 1 cut(s) 407
Kzo9I GATC 4 cut(s) 56, 267, 401, 410
LmnI GCTCC 5 cut(s) 111, 375, 502, 508, 514
Lsp1109I GCAGC 7 cut(s) 29, 41, 430, 433, 475, 481, 503
LweI GCATC 2 cut(s) 475, 558
MaeI CTAG 1 cut(s) 159
MaeII ACGT 1 cut(s) 375
MaeIII GTNAC 1 cut(s) 220
MalI GATC 4 cut(s) 58, 269, 403, 412
MboI GATC 4 cut(s) 56, 267, 401, 410
MboII GAAGA 2 cut(s) 396, 398
MflI RGATCY 2 cut(s) 401, 410
MhlI GDGCHC 2 cut(s) 157, 306
MlsI TGGCCA 1 cut(s) 363
MluCI AATT 1 cut(s) 70
MluNI TGGCCA 1 cut(s) 363
MmeI TCCRAC 1 cut(s) 73
MnlI CCTC 4 cut(s) 89, 238, 349, 529
Mox20I TGGCCA 1 cut(s) 363
MroI TCCGGA 1 cut(s) 407
MscI TGGCCA 1 cut(s) 363
Msp20I TGGCCA 1 cut(s) 363
MspA1I CMGCKG 1 cut(s) 494
MspI CCGG 3 cut(s) 210, 408, 467
MspR9I CCNGG 3 cut(s) 284, 315, 467
MvaI CCWGG 2 cut(s) 284, 315
MwoI GCNNNNNNNGC 9 cut(s) 342, 351, 360, 455, 488, 494, 500, 515, 524
NciI CCSGG 1 cut(s) 467
NdeII GATC 4 cut(s) 56, 267, 401, 410
NlaIV GGNNCC 3 cut(s) 208, 288, 471
NmuCI GTSAC 1 cut(s) 220
PceI AGGCCT 2 cut(s) 458, 518
PcsI WCGNNNNNNNCGW 1 cut(s) 111
PkrI GCNGC 9 cut(s) 31, 44, 445, 448, 490, 493, 496, 526, 529
Ple19I CGATCG 1 cut(s) 270
Psp6I CCWGG 2 cut(s) 282, 313
PspGI CCWGG 2 cut(s) 282, 313
PspN4I GGNNCC 3 cut(s) 208, 288, 471
PspPI GGNCC 1 cut(s) 287
PstI CTGCAG 1 cut(s) 493
PstNI CAGNNNCTG 1 cut(s) 65
PsuI RGATCY 2 cut(s) 401, 410
PvuI CGATCG 1 cut(s) 270
PvuII CAGCTG 1 cut(s) 494
RsaI GTAC 2 cut(s) 117, 340
RsaNI GTAC 2 cut(s) 116, 339
SatI GCNGC 9 cut(s) 30, 43, 444, 447, 489, 492, 495, 525, 528
Sau3AI GATC 4 cut(s) 56, 267, 401, 410
Sau96I GGNCC 1 cut(s) 287
ScrFI CCNGG 3 cut(s) 284, 315, 467
SduI GDGCHC 2 cut(s) 157, 306
SetI ASST 9 cut(s) 104, 121, 137, 167, 285, 372, 378, 475, 496
SfaNI GCATC 2 cut(s) 475, 558
SfcI CTRYAG 2 cut(s) 331, 489
SinI GGWCC 1 cut(s) 287
Sse9I AATT 1 cut(s) 70
SseBI AGGCCT 2 cut(s) 458, 518
SsiI CCGC 5 cut(s) 236, 336, 482, 525, 528
SspMI CTAG 1 cut(s) 159
StuI AGGCCT 2 cut(s) 458, 518
StyD4I CCNGG 3 cut(s) 282, 313, 465
TaaI ACNGT 1 cut(s) 226
TaiI ACGT 1 cut(s) 378
TasI AATT 1 cut(s) 70
TauI GCSGC 2 cut(s) 527, 530
TscAI CASTG 2 cut(s) 70, 356
TseFI GTSAC 1 cut(s) 220
TseI GCWGC 7 cut(s) 29, 42, 443, 446, 488, 491, 494
Tsp45I GTSAC 1 cut(s) 220
TspDTI ATGAA 2 cut(s) 411, 577
TspRI CASTG 2 cut(s) 70, 356
VpaK11BI GGWCC 1 cut(s) 287
XspI CTAG 1 cut(s) 159
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.