Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000083.1

Orthogroup ID

OG0017765

Physical Location & Seq

Genomic Coordinates Reverse (-)

36925 .. 37670

Gene Structure 746 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 558 bp

atggaccggcacagctccacatctgtggattcactggcaaagattgcgcggttcgccaaggagtcggaagagaacaggaagtttctcgccaagtgcaacgagtttgtggcgctgctcgttgaggctcttggtgacggcaaggccatcgacgaaggtcacgggagcaacaacattcgcattctcgagcaaatcatcaggatcattcattttctgactggagaaatccaagagaataatgaattgatgagattgatgttgaagaagagcggcgccggcgccggagattgtttggcttctctgctgcttattctccaacaaggaagccccgggtctcaaatttcctcgactaggagactactaaaggtgttgagctcagagatggagcacgcagtgacgattctgtggagcgtgtgctacttgttcaaggagcgatcggcacgaaatgggccagctgaatccatggcggcgtcgatggggctgactagattggaaagggagagggacttggtgtcgaagagggtttggaggtcggagagagtggaatcggagatgggttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0005102 GO:0005488 GO:0005515 GO:0005575 GO:0005911 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009506 GO:0009987 GO:0010033 GO:0010200 GO:0010243 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0030054 GO:0032446 GO:0033612 GO:0036211 GO:0042221 GO:0042493 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0050896 GO:0055044 GO:0070647 GO:0070696 GO:0071704 GO:0140096 GO:1901564 GO:1901698 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

U-box

Protein Analysis

185

Amino Acids

20.62

Weight (kDa)

7.76

Isoelectric Point (pI)

44.7

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ARM_PUB	PF25598	7 - 127	6.9e-12	Plant U-box protein ARM repeat region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0017765)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0376661
rosa_laevigata	RLG00000007437 RLG00000028990
rosa_multiflora	Rmu_sc0025594.1_g000001 Rmu_ssc0000083.1_g000011
rosa_roxburghii	Rroxscaffold_3G00223260 Rroxscaffold_7G00180150
rosa_samantha	Rh3BG243100 Rh3CG284600 Rh6AG485600 Rh6BG092200 Rh7CG469700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	269, 275
AccBSI	CCGCTC	1 cut(s)	267
AccII	CGCG	1 cut(s)	49
AciI	CCGC	3 cut(s)	49, 267, 464
AclWI	GGATC	1 cut(s)	206
AcsI	RAATTY	1 cut(s)	336
AcyI	GRCGYC	3 cut(s)	270, 276, 467
AdeI	CACNNNGTG	1 cut(s)	391
AfiI	CCNNNNNNNGG	1 cut(s)	348
AgsI	TTSAA	2 cut(s)	259, 424
AhdI	GACNNNNNGTC	1 cut(s)	508
AleI	CACNNNNGTG	1 cut(s)	23
AluBI	AGCT	3 cut(s)	15, 372, 452
AluI	AGCT	3 cut(s)	15, 372, 452
Alw21I	GWGCWC	2 cut(s)	374, 387
Alw26I	GTCTC	2 cut(s)	336, 346
AlwI	GGATC	1 cut(s)	206
Ama87I	CYCGRG	2 cut(s)	182, 326
AoxI	GGCC	2 cut(s)	141, 446
ApeKI	GCWGC	2 cut(s)	112, 301
ApoI	RAATTY	1 cut(s)	336
AspLEI	GCGC	4 cut(s)	49, 112, 272, 278
AspS9I	GGNCC	2 cut(s)	4, 446
AsuC2I	CCSGG	2 cut(s)	327, 328
AsuHPI	GGTGA	1 cut(s)	143
AvaI	CYCGRG	2 cut(s)	182, 326
AvaII	GGWCC	1 cut(s)	4
BanI	GGYRCC	2 cut(s)	269, 275
BanII	GRGCYC	1 cut(s)	374
Bbv12I	GWGCWC	2 cut(s)	374, 387
BbvI	GCAGC	2 cut(s)	99, 288
BccI	CCATC	4 cut(s)	152, 373, 466, 544
BceAI	ACGGC	1 cut(s)	151
BcgI	CGANNNNNNTGC	2 cut(s)	127, 161
BcnI	CCSGG	2 cut(s)	327, 328
BcoDI	GTCTC	2 cut(s)	336, 346
BfaI	CTAG	2 cut(s)	348, 483
BfoI	RGCGCY	3 cut(s)	113, 273, 279
BisI	GCNGC	4 cut(s)	113, 268, 302, 465
BlsI	GCNGC	4 cut(s)	114, 269, 303, 466
Bme1390I	CCNGG	2 cut(s)	327, 328
Bme18I	GGWCC	1 cut(s)	4
BmeRI	GACNNNNNGTC	1 cut(s)	508
BmeT110I	CYCGRG	2 cut(s)	182, 326
BmgT120I	GGNCC	2 cut(s)	4, 446
BmiI	GGNNCC	2 cut(s)	271, 277
BmrFI	CCNGG	2 cut(s)	327, 328
BoxI	GACNNNNGTC	1 cut(s)	153
BpmI	CTGGAG	1 cut(s)	237
BpuMI	CCSGG	2 cut(s)	327, 328
BsaHI	GRCGYC	3 cut(s)	270, 276, 467
BsaI	GGTCTC	1 cut(s)	336
BsaJI	CCNNGG	4 cut(s)	57, 325, 326, 459
Bsc4I	CCNNNNNNNGG	1 cut(s)	348
Bse118I	RCCGGY	2 cut(s)	6, 272
Bse1I	ACTGG	2 cut(s)	39, 220
BseDI	CCNNGG	4 cut(s)	57, 325, 326, 459
BseLI	CCNNNNNNNGG	1 cut(s)	348
BseMII	CTCAG	1 cut(s)	387
BseNI	ACTGG	2 cut(s)	39, 220
BseXI	GCAGC	2 cut(s)	99, 288
Bsh1236I	CGCG	1 cut(s)	49
Bsh1285I	CGRYCG	1 cut(s)	434
BshFI	GGCC	2 cut(s)	143, 448
BshNI	GGYRCC	2 cut(s)	269, 275
BsiEI	CGRYCG	1 cut(s)	434
BsiHKAI	GWGCWC	2 cut(s)	374, 387
BsiHKCI	CYCGRG	2 cut(s)	182, 326
BsiSI	CCGG	4 cut(s)	7, 273, 279, 327
BslFI	GGGAC	1 cut(s)	515
BslI	CCNNNNNNNGG	1 cut(s)	348
BsmAI	GTCTC	2 cut(s)	336, 346
BsmFI	GGGAC	1 cut(s)	515
BsmI	GAATGC	1 cut(s)	177
BsnI	GGCC	2 cut(s)	143, 448
Bso31I	GGTCTC	1 cut(s)	336
BsoBI	CYCGRG	2 cut(s)	182, 326
Bsp1286I	GDGCHC	2 cut(s)	374, 387
Bsp143I	GATC	2 cut(s)	198, 431
Bsp19I	CCATGG	1 cut(s)	459
BspACI	CCGC	3 cut(s)	49, 267, 464
BspANI	GGCC	2 cut(s)	143, 448
BspCNI	CTCAG	1 cut(s)	386
BspFNI	CGCG	1 cut(s)	49
BspLI	GGNNCC	2 cut(s)	271, 277
BspPI	GGATC	1 cut(s)	206
BspQI	GCTCTTC	1 cut(s)	257
BspT107I	GGYRCC	2 cut(s)	269, 275
BspTNI	GGTCTC	1 cut(s)	336
BsrBI	CCGCTC	1 cut(s)	267
BsrFI	RCCGGY	2 cut(s)	6, 272
BsrI	ACTGG	2 cut(s)	39, 220
BssAI	RCCGGY	2 cut(s)	6, 272
BssECI	CCNNGG	4 cut(s)	57, 325, 326, 459
BssMI	GATC	2 cut(s)	198, 431
BssNI	GRCGYC	3 cut(s)	270, 276, 467
BssT1I	CCWWGG	2 cut(s)	57, 459
Bst6I	CTCTTC	3 cut(s)	63, 257, 509
BstACI	GRCGYC	3 cut(s)	270, 276, 467
BstAPI	GCANNNNNTGC	1 cut(s)	44
BstC8I	GCNNGC	3 cut(s)	274, 387, 450
BstDEI	CTNAG	1 cut(s)	373
BstDSI	CCRYGG	1 cut(s)	459
BstENI	CCTNNNNNAGG	1 cut(s)	346
BstFNI	CGCG	1 cut(s)	49
BstH2I	RGCGCY	3 cut(s)	113, 273, 279
BstHHI	GCGC	4 cut(s)	49, 112, 272, 278
BstKTI	GATC	2 cut(s)	201, 434
BstMAI	GTCTC	2 cut(s)	336, 346
BstMBI	GATC	2 cut(s)	198, 431
BstMCI	CGRYCG	1 cut(s)	434
BstMWI	GCNNNNNNNGC	3 cut(s)	44, 53, 273
BstPAI	GACNNNNGTC	1 cut(s)	153
BstSCI	CCNGG	2 cut(s)	325, 326
BstUI	CGCG	1 cut(s)	49
BstV1I	GCAGC	2 cut(s)	99, 288
BstXI	CCANNNNNNTGG	1 cut(s)	25
BsuRI	GGCC	2 cut(s)	143, 448
BtgI	CCRYGG	1 cut(s)	459
BtsI	GCAGTG	1 cut(s)	396
BtsIMutI	CAGTG	2 cut(s)	32, 396
Cac8I	GCNNGC	3 cut(s)	274, 387, 450
CfoI	GCGC	4 cut(s)	49, 112, 272, 278
Cfr10I	RCCGGY	2 cut(s)	6, 272
Cfr13I	GGNCC	2 cut(s)	4, 446
Cfr9I	CCCGGG	1 cut(s)	326
CseI	GACGC	1 cut(s)	456
CviAII	CATG	1 cut(s)	460
CviJI	RGCY	9 cut(s)	15, 125, 143, 293, 324, 372, 448, 452, 478
CviKI_1	RGCY	9 cut(s)	15, 125, 143, 293, 324, 372, 448, 452, 478
DdeI	CTNAG	1 cut(s)	373
DinI	GGCGCC	2 cut(s)	271, 277
DpnI	GATC	2 cut(s)	200, 433
DpnII	GATC	2 cut(s)	198, 431
DraIII	CACNNNGTG	1 cut(s)	391
DriI	GACNNNNNGTC	1 cut(s)	508
Eam1104I	CTCTTC	3 cut(s)	63, 257, 509
Eam1105I	GACNNNNNGTC	1 cut(s)	508
EarI	CTCTTC	3 cut(s)	63, 257, 509
Ecl136II	GAGCTC	1 cut(s)	372
Eco130I	CCWWGG	2 cut(s)	57, 459
Eco24I	GRGCYC	1 cut(s)	374
Eco31I	GGTCTC	1 cut(s)	336
Eco47I	GGWCC	1 cut(s)	4
Eco53kI	GAGCTC	1 cut(s)	372
Eco88I	CYCGRG	2 cut(s)	182, 326
EcoICRI	GAGCTC	1 cut(s)	372
EcoNI	CCTNNNNNAGG	1 cut(s)	346
EcoT14I	CCWWGG	2 cut(s)	57, 459
EcoT38I	GRGCYC	1 cut(s)	374
EgeI	GGCGCC	2 cut(s)	271, 277
EheI	GGCGCC	2 cut(s)	271, 277
ErhI	CCWWGG	2 cut(s)	57, 459
FaeI	CATG	1 cut(s)	463
FaiI	YATR	1 cut(s)	461
FaqI	GGGAC	1 cut(s)	515
FatI	CATG	1 cut(s)	459
Fnu4HI	GCNGC	4 cut(s)	113, 268, 302, 465
FriOI	GRGCYC	1 cut(s)	374
Fsp4HI	GCNGC	4 cut(s)	113, 268, 302, 465
FspBI	CTAG	2 cut(s)	348, 483
GlaI	GCGC	4 cut(s)	48, 111, 271, 277
GluI	GCNGC	4 cut(s)	113, 268, 302, 465
GsuI	CTGGAG	1 cut(s)	237
HaeII	RGCGCY	3 cut(s)	113, 273, 279
HaeIII	GGCC	2 cut(s)	143, 448
HapII	CCGG	4 cut(s)	7, 273, 279, 327
HgaI	GACGC	1 cut(s)	456
HhaI	GCGC	4 cut(s)	49, 112, 272, 278
Hin1I	GRCGYC	3 cut(s)	270, 276, 467
Hin1II	CATG	1 cut(s)	463
Hin6I	GCGC	4 cut(s)	47, 110, 270, 276
HinP1I	GCGC	4 cut(s)	47, 110, 270, 276
HinfI	GANTC	5 cut(s)	29, 62, 397, 455, 542
HpaII	CCGG	4 cut(s)	7, 273, 279, 327
HphI	GGTGA	1 cut(s)	143
Hpy188I	TCNGA	5 cut(s)	67, 213, 376, 532, 547
Hpy188III	TCNNGA	2 cut(s)	182, 196
Hpy99I	CGWCG	2 cut(s)	152, 472
HpyAV	CCTTC	1 cut(s)	146
HpyCH4V	TGCA	1 cut(s)	96
HpyF10VI	GCNNNNNNNGC	3 cut(s)	44, 53, 273
HpyF3I	CTNAG	1 cut(s)	373
Hsp92I	GRCGYC	3 cut(s)	270, 276, 467
Hsp92II	CATG	1 cut(s)	463
HspAI	GCGC	4 cut(s)	47, 110, 270, 276
KasI	GGCGCC	2 cut(s)	269, 275
KroI	GCCGGC	1 cut(s)	272
KroNI	GCCGGC	1 cut(s)	274
Kzo9I	GATC	2 cut(s)	198, 431
LguI	GCTCTTC	1 cut(s)	257
LmnI	GCTCC	5 cut(s)	20, 162, 382, 405, 427
LpnPI	CCDG	9 cut(s)	20, 20, 61, 181, 201, 286, 292, 340, 462
Lsp1109I	GCAGC	2 cut(s)	99, 288
MaeI	CTAG	2 cut(s)	348, 483
MaeIII	GTNAC	3 cut(s)	131, 155, 391
MalI	GATC	2 cut(s)	200, 433
MbiI	CCGCTC	1 cut(s)	267
MboI	GATC	2 cut(s)	198, 431
MboII	GAAGA	4 cut(s)	80, 271, 274, 526
MhlI	GDGCHC	2 cut(s)	374, 387
MluCI	AATT	2 cut(s)	239, 336
Mly113I	GGCGCC	2 cut(s)	270, 276
MlyI	GAGTC	1 cut(s)	71
MmeI	TCCRAC	3 cut(s)	45, 337, 510
MnlI	CCTC	5 cut(s)	115, 352, 492, 510, 519
MreI	CGCCGGCG	1 cut(s)	272
MroNI	GCCGGC	1 cut(s)	272
MslI	CAYNNNNRTG	1 cut(s)	23
MspA1I	CMGCKG	1 cut(s)	452
MspI	CCGG	4 cut(s)	7, 273, 279, 327
MspR9I	CCNGG	2 cut(s)	327, 328
Mva1269I	GAATGC	1 cut(s)	177
MvnI	CGCG	1 cut(s)	49
MwoI	GCNNNNNNNGC	3 cut(s)	44, 53, 273
NaeI	GCCGGC	1 cut(s)	274
NarI	GGCGCC	2 cut(s)	270, 276
NciI	CCSGG	2 cut(s)	327, 328
NcoI	CCATGG	1 cut(s)	459
NdeII	GATC	2 cut(s)	198, 431
NgoMIV	GCCGGC	1 cut(s)	272
NlaIII	CATG	1 cut(s)	463
NlaIV	GGNNCC	2 cut(s)	271, 277
NmuCI	GTSAC	3 cut(s)	131, 155, 391
OliI	CACNNNNGTG	1 cut(s)	23
PaeR7I	CTCGAG	1 cut(s)	182
PciSI	GCTCTTC	1 cut(s)	257
PctI	GAATGC	1 cut(s)	177
PdiI	GCCGGC	1 cut(s)	274
PfeI	GAWTC	4 cut(s)	29, 397, 455, 542
PkrI	GCNGC	4 cut(s)	114, 269, 303, 466
Ple19I	CGATCG	1 cut(s)	434
PleI	GAGTC	1 cut(s)	70
PluTI	GGCGCC	2 cut(s)	273, 279
PpsI	GAGTC	1 cut(s)	70
PshAI	GACNNNNGTC	1 cut(s)	153
Psp124BI	GAGCTC	1 cut(s)	374
PspN4I	GGNNCC	2 cut(s)	271, 277
PspPI	GGNCC	2 cut(s)	4, 446
PvuI	CGATCG	1 cut(s)	434
PvuII	CAGCTG	1 cut(s)	452
RseI	CAYNNNNRTG	1 cut(s)	23
SacI	GAGCTC	1 cut(s)	374
SapI	GCTCTTC	1 cut(s)	257
SatI	GCNGC	4 cut(s)	113, 268, 302, 465
Sau3AI	GATC	2 cut(s)	198, 431
Sau96I	GGNCC	2 cut(s)	4, 446
SchI	GAGTC	1 cut(s)	71
ScrFI	CCNGG	2 cut(s)	327, 328
SduI	GDGCHC	2 cut(s)	374, 387
SetI	ASST	6 cut(s)	17, 157, 366, 374, 454, 530
SfoI	GGCGCC	2 cut(s)	271, 277
Sfr274I	CTCGAG	1 cut(s)	182
SgrAI	CRCCGGYG	1 cut(s)	272
SinI	GGWCC	1 cut(s)	4
SlaI	CTCGAG	1 cut(s)	182
SmaI	CCCGGG	1 cut(s)	328
SmiMI	CAYNNNNRTG	1 cut(s)	23
SmlI	CTYRAG	1 cut(s)	182
SmoI	CTYRAG	1 cut(s)	182
Sse9I	AATT	2 cut(s)	239, 336
SsiI	CCGC	3 cut(s)	49, 267, 464
SspDI	GGCGCC	2 cut(s)	269, 275
SspMI	CTAG	2 cut(s)	348, 483
SstI	GAGCTC	1 cut(s)	374
StyD4I	CCNGG	2 cut(s)	325, 326
StyI	CCWWGG	2 cut(s)	57, 459
TaqI	TCGA	5 cut(s)	147, 183, 344, 470, 512
TasI	AATT	2 cut(s)	239, 336
TauI	GCSGC	2 cut(s)	270, 467
TfiI	GAWTC	4 cut(s)	29, 397, 455, 542
TscAI	CASTG	2 cut(s)	39, 396
TseFI	GTSAC	3 cut(s)	131, 155, 391
TseI	GCWGC	2 cut(s)	112, 301
Tsp45I	GTSAC	3 cut(s)	131, 155, 391
TspDTI	ATGAA	2 cut(s)	194, 252
TspMI	CCCGGG	1 cut(s)	326
TspRI	CASTG	2 cut(s)	39, 396
VpaK11BI	GGWCC	1 cut(s)	4
XagI	CCTNNNNNAGG	1 cut(s)	346
XapI	RAATTY	1 cut(s)	336
XhoI	CTCGAG	1 cut(s)	182
XmaI	CCCGGG	1 cut(s)	326
XspI	CTAG	2 cut(s)	348, 483

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.