Rmu_ssc0000107.1_g000003
MYB Family

Myb family transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_ssc0000107.1
OG0013661
Physical Location & Seq
Forward (+)
26525 .. 27747
1223 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 471 bp
atgagtactagcagtagctgtggaagaaatggtgctgttaggccttatataagatccaaagtgcctcgtctcaggtggactcctgagcttcatcactgctttgttcaagccattgagaggcttggaggccataaaaaggctactccaaaacttgttcttcagattatggatgtcaaaggactcaccatttctcatgtcaaaagccatctccagatgtttagaagcatgaggggtgaccttagtagagcacctgcagatgggagtttcacgcagcatagaaagcaaagttttgaagagcatagtgatgggtgtcttgatcaagaagtaaatgttatgggtttgctctcggcttcaaaactcatcccggaatcagatcctcaggtcatctacagtgttccacgccggtcaaaacccatcagagaatcagatcctcaggccatctacactaatcccagcagttcaaaaaggtga

Protein Analysis

156

Amino Acids

17.52

Weight (kDa)

9.96

Isoelectric Point (pI)

62.33

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-binding PF00249 23 - 72 6.4e-08 Myb-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0013661)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g35980
malus_domestica MD13G1013200.v1.1 MD16G1010100.v1.1
prunus_persica Prupe.1G340500_v2.0.a1 Prupe.1G340500_v2.0.a1
pyrus_communis pycom13g01120 pycom16g00990
rosa_chinensis RchiOBHm_Chr4g0445611
rosa_laevigata RLG00000005725
rosa_multiflora Rmu_ssc0000107.1_g000003
rosa_roxburghii Rroxscaffold_5G00386090
rosa_rugosa Rorug04G0363000
rosa_samantha Rh4AG424400 Rh4AG424800 Rh4BG436600 Rh4CG451200 Rh4DG433100
rosa_wichuraiana Rw4G036390

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 259
Acc36I ACCTGC 1 cut(s) 259
AclWI GGATC 3 cut(s) 48, 368, 422
AcuI CTGAAG 1 cut(s) 143
AfaI GTAC 1 cut(s) 7
AfiI CCNNNNNNNGG 3 cut(s) 117, 136, 257
AgsI TTSAA 4 cut(s) 107, 293, 354, 462
AluBI AGCT 2 cut(s) 18, 88
AluI AGCT 2 cut(s) 18, 88
Alw21I GWGCWC 1 cut(s) 250
Alw26I GTCTC 1 cut(s) 74
AlwI GGATC 3 cut(s) 48, 368, 422
AlwNI CAGNNNCTG 1 cut(s) 18
AoxI GGCC 3 cut(s) 41, 127, 435
ApeKI GCWGC 1 cut(s) 271
AsuC2I CCSGG 1 cut(s) 365
AsuHPI GGTGA 2 cut(s) 175, 245
AxyI CCTNAGG 2 cut(s) 378, 432
Bbv12I GWGCWC 1 cut(s) 250
BbvI GCAGC 1 cut(s) 283
BccI CCATC 5 cut(s) 213, 251, 299, 422, 446
BclI TGATCA 1 cut(s) 316
BcnI CCSGG 1 cut(s) 365
BcoDI GTCTC 1 cut(s) 74
BfaI CTAG 1 cut(s) 9
BfmI CTRYAG 2 cut(s) 252, 388
BfuAI ACCTGC 1 cut(s) 259
BisI GCNGC 1 cut(s) 272
BlsI GCNGC 1 cut(s) 273
BmcAI AGTACT 1 cut(s) 7
Bme1390I CCNGG 1 cut(s) 365
BmrFI CCNGG 1 cut(s) 365
BpmI CTGGAG 1 cut(s) 194
Bpu10I CCTNAGC 1 cut(s) 84
BpuMI CCSGG 1 cut(s) 365
Bsc4I CCNNNNNNNGG 3 cut(s) 117, 136, 257
Bse118I RCCGGY 1 cut(s) 402
Bse21I CCTNAGG 2 cut(s) 378, 432
BseGI GGATG 2 cut(s) 175, 360
BseLI CCNNNNNNNGG 3 cut(s) 117, 136, 257
BseMII CTCAG 4 cut(s) 75, 85, 392, 446
BseXI GCAGC 1 cut(s) 283
BseYI CCCAGC 1 cut(s) 452
BshFI GGCC 3 cut(s) 43, 129, 437
BsiHKAI GWGCWC 1 cut(s) 250
BsiSI CCGG 2 cut(s) 365, 403
BslI CCNNNNNNNGG 3 cut(s) 117, 136, 257
BsmAI GTCTC 1 cut(s) 74
BsmBI CGTCTC 1 cut(s) 74
BsnI GGCC 3 cut(s) 43, 129, 437
Bsp1286I GDGCHC 1 cut(s) 250
Bsp143I GATC 4 cut(s) 53, 316, 373, 427
BspANI GGCC 3 cut(s) 43, 129, 437
BspCNI CTCAG 4 cut(s) 76, 84, 391, 445
BspMAI CTGCAG 1 cut(s) 256
BspMI ACCTGC 1 cut(s) 259
BspPI GGATC 3 cut(s) 48, 368, 422
BspQI GCTCTTC 1 cut(s) 288
BsrFI RCCGGY 1 cut(s) 402
BssAI RCCGGY 1 cut(s) 402
BssMI GATC 4 cut(s) 53, 316, 373, 427
Bst4CI ACNGT 1 cut(s) 392
Bst6I CTCTTC 1 cut(s) 288
BstDEI CTNAG 5 cut(s) 71, 84, 239, 378, 432
BstEII GGTNACC 1 cut(s) 233
BstF5I GGATG 2 cut(s) 175, 360
BstKTI GATC 4 cut(s) 56, 319, 376, 430
BstMAI GTCTC 1 cut(s) 74
BstMBI GATC 4 cut(s) 53, 316, 373, 427
BstMWI GCNNNNNNNGC 1 cut(s) 280
BstPI GGTNACC 1 cut(s) 233
BstSCI CCNGG 1 cut(s) 363
BstSFI CTRYAG 2 cut(s) 252, 388
BstV1I GCAGC 1 cut(s) 283
BstX2I RGATCY 3 cut(s) 53, 373, 427
BstYI RGATCY 3 cut(s) 53, 373, 427
Bsu36I CCTNAGG 2 cut(s) 378, 432
BsuRI GGCC 3 cut(s) 43, 129, 437
BtsCI GGATG 2 cut(s) 175, 360
BtsI GCAGTG 1 cut(s) 94
BtsIMutI CAGTG 2 cut(s) 94, 397
BveI ACCTGC 1 cut(s) 259
CaiI CAGNNNCTG 1 cut(s) 18
Cfr10I RCCGGY 1 cut(s) 402
Csp6I GTAC 1 cut(s) 6
CviAII CATG 2 cut(s) 194, 226
CviQI GTAC 1 cut(s) 6
DdeI CTNAG 5 cut(s) 71, 84, 239, 378, 432
DpnI GATC 4 cut(s) 55, 318, 375, 429
DpnII GATC 4 cut(s) 53, 316, 373, 427
Eam1104I CTCTTC 1 cut(s) 288
EarI CTCTTC 1 cut(s) 288
Eco147I AGGCCT 1 cut(s) 43
Eco57I CTGAAG 1 cut(s) 143
Eco81I CCTNAGG 2 cut(s) 378, 432
Eco91I GGTNACC 1 cut(s) 233
EcoO65I GGTNACC 1 cut(s) 233
Esp3I CGTCTC 1 cut(s) 74
FaeI CATG 2 cut(s) 197, 229
FaiI YATR 9 cut(s) 48, 50, 132, 167, 195, 227, 276, 300, 335
FatI CATG 2 cut(s) 193, 225
FbaI TGATCA 1 cut(s) 316
Fnu4HI GCNGC 1 cut(s) 272
FokI GGATG 2 cut(s) 182, 347
Fsp4HI GCNGC 1 cut(s) 272
FspBI CTAG 1 cut(s) 9
GluI GCNGC 1 cut(s) 272
GsaI CCCAGC 1 cut(s) 456
GsuI CTGGAG 1 cut(s) 194
HaeIII GGCC 3 cut(s) 43, 129, 437
HapII CCGG 2 cut(s) 365, 403
Hin1II CATG 2 cut(s) 197, 229
HinfI GANTC 4 cut(s) 79, 180, 368, 422
HpaII CCGG 2 cut(s) 365, 403
HphI GGTGA 2 cut(s) 175, 245
Hpy166II GTNNAC 1 cut(s) 78
Hpy188I TCNGA 4 cut(s) 162, 373, 419, 427
Hpy188III TCNNGA 4 cut(s) 83, 211, 314, 320
Hpy8I GTNNAC 1 cut(s) 78
HpyCH4III ACNGT 1 cut(s) 392
HpyCH4V TGCA 1 cut(s) 254
HpyF10VI GCNNNNNNNGC 1 cut(s) 280
HpyF3I CTNAG 5 cut(s) 71, 84, 239, 378, 432
Hsp92II CATG 2 cut(s) 197, 229
Ksp22I TGATCA 1 cut(s) 316
Kzo9I GATC 4 cut(s) 53, 316, 373, 427
LguI GCTCTTC 1 cut(s) 288
LpnPI CCDG 9 cut(s) 58, 96, 224, 264, 365, 378, 416, 419, 466
Lsp1109I GCAGC 1 cut(s) 283
MaeI CTAG 1 cut(s) 9
MaeIII GTNAC 1 cut(s) 233
MalI GATC 4 cut(s) 55, 318, 375, 429
MboI GATC 4 cut(s) 53, 316, 373, 427
MboII GAAGA 3 cut(s) 36, 149, 305
MflI RGATCY 3 cut(s) 53, 373, 427
MhlI GDGCHC 1 cut(s) 250
MlyI GAGTC 2 cut(s) 73, 174
MnlI CCTC 6 cut(s) 75, 111, 119, 222, 387, 441
MslI CAYNNNNRTG 1 cut(s) 303
MspI CCGG 2 cut(s) 365, 403
MspR9I CCNGG 1 cut(s) 365
MwoI GCNNNNNNNGC 1 cut(s) 280
NciI CCSGG 1 cut(s) 365
NdeII GATC 4 cut(s) 53, 316, 373, 427
NlaIII CATG 2 cut(s) 197, 229
NmeAIII GCCGAG 1 cut(s) 326
NmuCI GTSAC 1 cut(s) 233
PaqCI CACCTGC 1 cut(s) 259
PceI AGGCCT 1 cut(s) 43
PciSI GCTCTTC 1 cut(s) 288
PfeI GAWTC 2 cut(s) 368, 422
PfoI TCCNGGA 1 cut(s) 363
PkrI GCNGC 1 cut(s) 273
PleI GAGTC 2 cut(s) 73, 174
PpsI GAGTC 2 cut(s) 73, 174
PspEI GGTNACC 1 cut(s) 233
PspFI CCCAGC 1 cut(s) 452
PstI CTGCAG 1 cut(s) 256
PstNI CAGNNNCTG 1 cut(s) 18
PsuI RGATCY 3 cut(s) 53, 373, 427
RsaI GTAC 1 cut(s) 7
RsaNI GTAC 1 cut(s) 6
RseI CAYNNNNRTG 1 cut(s) 303
SapI GCTCTTC 1 cut(s) 288
SatI GCNGC 1 cut(s) 272
Sau3AI GATC 4 cut(s) 53, 316, 373, 427
ScaI AGTACT 1 cut(s) 7
SchI GAGTC 2 cut(s) 73, 174
ScrFI CCNGG 1 cut(s) 365
SduI GDGCHC 1 cut(s) 250
SetI ASST 7 cut(s) 20, 77, 90, 240, 253, 384, 470
SfcI CTRYAG 2 cut(s) 252, 388
SmiMI CAYNNNNRTG 1 cut(s) 303
SseBI AGGCCT 1 cut(s) 43
SspMI CTAG 1 cut(s) 9
StuI AGGCCT 1 cut(s) 43
StyD4I CCNGG 1 cut(s) 363
TaaI ACNGT 1 cut(s) 392
TatI WGTACW 1 cut(s) 5
TfiI GAWTC 2 cut(s) 368, 422
TscAI CASTG 2 cut(s) 101, 397
TseFI GTSAC 1 cut(s) 233
TseI GCWGC 1 cut(s) 271
Tsp45I GTSAC 1 cut(s) 233
TspDTI ATGAA 1 cut(s) 80
TspRI CASTG 2 cut(s) 101, 397
XspI CTAG 1 cut(s) 9
ZrmI AGTACT 1 cut(s) 7
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.