Rmu_ssc0000110.1_g000006

Ribosomal protein-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_ssc0000110.1
OG0017854
Physical Location & Seq
Forward (+)
15707 .. 16192
486 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 360 bp
atggttgcagaaagatcaagaagaagccatcgacaagccttgatgatgtcttccgctgccttgcaaatccaaactctggaagttgaggattcacaatggggtggttcttcagaaggtcgtacctataaggccagggatcgagatctgatggatcttcgactcaaagctcaatacttcactgatctgtgtagcttatccactgaacaaaaacttacatgcgccatgagaatgctcgcgtatggcatcacagctgatttctgcgatgattacctagatattgcgaagaccactaccattgagatttttgagcacttcacaaaagcaatctggaatgtgtaccatgagacttacctccgctga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Plant_tran

Protein Analysis

119

Amino Acids

13.86

Weight (kDa)

5.89

Isoelectric Point (pI)

48.65

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 76
AccII CGCG 1 cut(s) 236
AciI CCGC 2 cut(s) 54, 355
AclWI GGATC 2 cut(s) 144, 159
AcuI CTGAAG 1 cut(s) 93
AfaI GTAC 2 cut(s) 121, 338
AfiI CCNNNNNNNGG 1 cut(s) 76
AjnI CCWGG 1 cut(s) 131
AluBI AGCT 3 cut(s) 167, 192, 251
AluI AGCT 3 cut(s) 167, 192, 251
Alw21I GWGCWC 1 cut(s) 312
Alw26I GTCTC 1 cut(s) 338
AlwI GGATC 2 cut(s) 144, 159
AoxI GGCC 1 cut(s) 129
ApeKI GCWGC 1 cut(s) 56
AspLEI GCGC 1 cut(s) 221
BbsI GAAGAC 2 cut(s) 42, 290
Bbv12I GWGCWC 1 cut(s) 312
BbvI GCAGC 1 cut(s) 43
BccI CCATC 2 cut(s) 36, 142
BciT130I CCWGG 1 cut(s) 133
BcoDI GTCTC 1 cut(s) 338
BfaI CTAG 1 cut(s) 272
BglII AGATCT 1 cut(s) 142
BisI GCNGC 1 cut(s) 57
BlsI GCNGC 1 cut(s) 58
Bme1390I CCNGG 1 cut(s) 133
BmrFI CCNGG 1 cut(s) 133
BmsI GCATC 1 cut(s) 252
BpiI GAAGAC 2 cut(s) 42, 290
BsaBI GATNNNNATC 1 cut(s) 141
BsaJI CCNNGG 1 cut(s) 132
Bsc4I CCNNNNNNNGG 1 cut(s) 76
Bse8I GATNNNNATC 1 cut(s) 141
BseBI CCWGG 1 cut(s) 133
BseDI CCNNGG 1 cut(s) 132
BseJI GATNNNNATC 1 cut(s) 141
BseLI CCNNNNNNNGG 1 cut(s) 76
BseXI GCAGC 1 cut(s) 43
Bsh1236I CGCG 1 cut(s) 236
BshFI GGCC 1 cut(s) 131
BsiHKAI GWGCWC 1 cut(s) 312
BslI CCNNNNNNNGG 1 cut(s) 76
BsmAI GTCTC 1 cut(s) 338
BsmI GAATGC 1 cut(s) 234
BsnI GGCC 1 cut(s) 131
Bsp1286I GDGCHC 1 cut(s) 312
Bsp143I GATC 5 cut(s) 14, 136, 142, 151, 181
BspACI CCGC 2 cut(s) 54, 355
BspANI GGCC 1 cut(s) 131
BspFNI CGCG 1 cut(s) 236
BspPI GGATC 2 cut(s) 144, 159
BssECI CCNNGG 1 cut(s) 132
BssMI GATC 5 cut(s) 14, 136, 142, 151, 181
Bst2UI CCWGG 1 cut(s) 133
BstC8I GCNNGC 1 cut(s) 234
BstFNI CGCG 1 cut(s) 236
BstHHI GCGC 1 cut(s) 221
BstKTI GATC 5 cut(s) 17, 139, 145, 154, 184
BstMAI GTCTC 1 cut(s) 338
BstMBI GATC 5 cut(s) 14, 136, 142, 151, 181
BstNI CCWGG 1 cut(s) 133
BstNSI RCATGY 1 cut(s) 219
BstSCI CCNGG 1 cut(s) 131
BstUI CGCG 1 cut(s) 236
BstV1I GCAGC 1 cut(s) 43
BstV2I GAAGAC 2 cut(s) 42, 290
BstX2I RGATCY 2 cut(s) 142, 151
BstYI RGATCY 2 cut(s) 142, 151
BsuRI GGCC 1 cut(s) 131
BtgZI GCGATG 1 cut(s) 276
BtsIMutI CAGTG 2 cut(s) 177, 198
Cac8I GCNNGC 1 cut(s) 234
CfoI GCGC 1 cut(s) 221
Csp6I GTAC 2 cut(s) 120, 337
CspCI CAANNNNNGTGG 2 cut(s) 277, 312
CviAII CATG 3 cut(s) 216, 223, 341
CviJI RGCY 6 cut(s) 27, 38, 131, 167, 192, 251
CviKI_1 RGCY 6 cut(s) 27, 38, 131, 167, 192, 251
CviQI GTAC 2 cut(s) 120, 337
DpnI GATC 5 cut(s) 16, 138, 144, 153, 183
DpnII GATC 5 cut(s) 14, 136, 142, 151, 181
Eco57I CTGAAG 1 cut(s) 93
EcoRII CCWGG 1 cut(s) 131
FaeI CATG 3 cut(s) 219, 226, 344
FaiI YATR 5 cut(s) 126, 217, 224, 240, 342
FatI CATG 3 cut(s) 215, 222, 340
Fnu4HI GCNGC 1 cut(s) 57
Fsp4HI GCNGC 1 cut(s) 57
FspBI CTAG 1 cut(s) 272
GlaI GCGC 1 cut(s) 220
GluI GCNGC 1 cut(s) 57
HaeIII GGCC 1 cut(s) 131
HhaI GCGC 1 cut(s) 221
Hin1II CATG 3 cut(s) 219, 226, 344
Hin6I GCGC 1 cut(s) 219
HinP1I GCGC 1 cut(s) 219
HinfI GANTC 2 cut(s) 89, 159
Hpy166II GTNNAC 1 cut(s) 337
Hpy188I TCNGA 2 cut(s) 112, 147
Hpy188III TCNNGA 4 cut(s) 18, 77, 140, 328
Hpy8I GTNNAC 1 cut(s) 337
HpyAV CCTTC 1 cut(s) 107
HpyCH4V TGCA 2 cut(s) 8, 64
Hsp92II CATG 3 cut(s) 219, 226, 344
HspAI GCGC 1 cut(s) 219
Kzo9I GATC 5 cut(s) 14, 136, 142, 151, 181
LpnPI CCDG 4 cut(s) 62, 118, 145, 313
Lsp1109I GCAGC 1 cut(s) 43
LweI GCATC 1 cut(s) 252
MaeI CTAG 1 cut(s) 272
MalI GATC 5 cut(s) 16, 138, 144, 153, 183
MboI GATC 5 cut(s) 14, 136, 142, 151, 181
MboII GAAGA 5 cut(s) 33, 42, 99, 146, 295
MflI RGATCY 2 cut(s) 142, 151
MhlI GDGCHC 1 cut(s) 312
MlyI GAGTC 1 cut(s) 153
MnlI CCTC 1 cut(s) 79
MslI CAYNNNNRTG 1 cut(s) 227
MspA1I CMGCKG 3 cut(s) 56, 251, 357
MspR9I CCNGG 1 cut(s) 133
Mva1269I GAATGC 1 cut(s) 234
MvaI CCWGG 1 cut(s) 133
MvnI CGCG 1 cut(s) 236
NdeII GATC 5 cut(s) 14, 136, 142, 151, 181
NlaIII CATG 3 cut(s) 219, 226, 344
NspI RCATGY 1 cut(s) 219
PctI GAATGC 1 cut(s) 234
PfeI GAWTC 1 cut(s) 89
PflMI CCANNNNNTGG 1 cut(s) 76
PkrI GCNGC 1 cut(s) 58
PleI GAGTC 1 cut(s) 153
PpsI GAGTC 1 cut(s) 153
Psp6I CCWGG 1 cut(s) 131
PspGI CCWGG 1 cut(s) 131
PsuI RGATCY 2 cut(s) 142, 151
PvuII CAGCTG 1 cut(s) 251
RsaI GTAC 2 cut(s) 121, 338
RsaNI GTAC 2 cut(s) 120, 337
RseI CAYNNNNRTG 1 cut(s) 227
SatI GCNGC 1 cut(s) 57
Sau3AI GATC 5 cut(s) 14, 136, 142, 151, 181
SchI GAGTC 1 cut(s) 153
ScrFI CCNGG 1 cut(s) 133
SduI GDGCHC 1 cut(s) 312
SetI ASST 7 cut(s) 118, 125, 169, 194, 253, 273, 354
SfaNI GCATC 1 cut(s) 252
SmiMI CAYNNNNRTG 1 cut(s) 227
SsiI CCGC 2 cut(s) 54, 355
SspMI CTAG 1 cut(s) 272
StyD4I CCNGG 1 cut(s) 131
TaqI TCGA 3 cut(s) 31, 139, 157
TfiI GAWTC 1 cut(s) 89
TscAI CASTG 2 cut(s) 184, 205
TseI GCWGC 1 cut(s) 56
TspRI CASTG 2 cut(s) 184, 205
Van91I CCANNNNNTGG 1 cut(s) 76
XceI RCATGY 1 cut(s) 219
XspI CTAG 1 cut(s) 272
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.