Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000114.1

Orthogroup ID

OG0018219

Physical Location & Seq

Genomic Coordinates Forward (+)

337372 .. 342341

Gene Structure 4970 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1044 bp

atggaggtgattctcggtgaaggcgcagatccggagccatcgatcgtcgcagatgttggtggatcggctgtcgcacttcatagcaagttttgtgaaagcgtcgaagcggaagaagagagagaggatgaaggttacggtcccgtctccagcggagttttctgggcccgagttgttgagcaagctggaatcggcatctgggcatgtaaattggctgtgaaaggacagagctggctaagctgcaaaaggaagaagacgactagaacagttttcaagcttatcaacttgtcatttaaaacgacgccgttatggctgcttgttcttcttcaacttacaaatttgcaattgttagctggatgttacttgcatagtaatcaagcttatgccgcataccatattttaaagggaacacaagtggctcaatcacgctacttgtttgctatgtcatgctatcagatgaatcttctgaatgcggcagaagcagcattatgcccccctaatgagcctagtgcagaggttccaaatggcgcagcaggtcattaccttcttgggcttatttataggtatgctgatagaaggaaaagtgccatccatcactttaaacaggctttgactatagacccttcaatgtgggctgtgtatgaagagctgtgcgtgctaggttctgctgaagaagcagctgtggtttttggggaagctgctgctctctccatacaaaaacagtacctacatcatggattagcttctcaaagtttactcaccgtcaatgatgattgcaatttagtttctggaaggaactttagctttgaagatgttagtccaagacaattgaaactaatgcaaggcagtaatacaagagatagttctggaaattctcatgttattttaggaggagtttctggtcagcctacaaacggcagttctaacatatctttctataacactccttcaccaatgcctatgcaggagccatttgtgctggtgtatgatttgatttgctttgaggtggtggatcaaagtaaaaccagatgcagggagatggtttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000151 GO:0000152 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005680 GO:0005737 GO:0005819 GO:0005856 GO:0007275 GO:0007346 GO:0008150 GO:0009504 GO:0009653 GO:0009719 GO:0009725 GO:0009733 GO:0009790 GO:0009791 GO:0009793 GO:0009888 GO:0009933 GO:0009987 GO:0010014 GO:0010015 GO:0010033 GO:0010071 GO:0010154 GO:0015630 GO:0022414 GO:0022622 GO:0030154 GO:0031461 GO:0032501 GO:0032502 GO:0032991 GO:0042221 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044422 GO:0044424 GO:0044428 GO:0044430 GO:0044444 GO:0044446 GO:0044464 GO:0048316 GO:0048364 GO:0048507 GO:0048508 GO:0048532 GO:0048608 GO:0048731 GO:0048829 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051726 GO:0061458 GO:0065007 GO:0090421 GO:0099402 GO:1902494 GO:1905392 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko04110 ko04111 ko04113 ko04114 ko04120 ko04914 ko05166 map04110 map04111 map04113 map04114 map04120 map04914 map05166

Pfam Domains

Protein Families

ANAPC3 TPR_1 TPR_16 TPR_19 TPR_2 TPR_8

Protein Analysis

347

Amino Acids

37.98

Weight (kDa)

5.74

Isoelectric Point (pI)

43.18

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ANAPC3	PF12895	111 - 163	5.8e-08	Anaphase-promoting complex, cyclosome, subunit 3

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0018219)

Species	Orthologous Gene IDs
rosa_laevigata	RLG00000005656 RLG00000006020 RLG00000018533 RLG00000022775 RLG00000029073
rosa_multiflora	Rmu_sc0027398.1_g000001 Rmu_ssc0000114.1_g000064
rosa_roxburghii	Rroxscaffold_1G00014130
rosa_samantha	Rh5CG127000 Rh5DG079800 Rh5DG110500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	521
AccIII	TCCGGA	1 cut(s)	31
AciI	CCGC	4 cut(s)	107, 150, 384, 470
AclWI	GGATC	3 cut(s)	23, 70, 1017
AcsI	RAATTY	2 cut(s)	334, 868
AcuI	CTGAAG	1 cut(s)	687
AcyI	GRCGYC	1 cut(s)	299
AfaI	GTAC	1 cut(s)	722
AfiI	CCNNNNNNNGG	2 cut(s)	911, 1029
AgsI	TTSAA	5 cut(s)	271, 326, 624, 806, 829
Alw26I	GTCTC	1 cut(s)	148
AlwI	GGATC	3 cut(s)	23, 70, 1017
Ama87I	CYCGRG	1 cut(s)	165
Aor13HI	TCCGGA	1 cut(s)	31
AoxI	GGCC	1 cut(s)	162
ApaI	GGGCCC	1 cut(s)	166
ApeKI	GCWGC	7 cut(s)	237, 310, 479, 527, 674, 695, 698
ApoI	RAATTY	2 cut(s)	334, 868
AspLEI	GCGC	2 cut(s)	26, 527
AspS9I	GGNCC	3 cut(s)	137, 162, 163
AsuHPI	GGTGA	4 cut(s)	19, 29, 748, 939
AvaI	CYCGRG	1 cut(s)	165
AvaII	GGWCC	1 cut(s)	137
BaeGI	GKGCMC	1 cut(s)	166
BanII	GRGCYC	1 cut(s)	166
BbsI	GAAGAC	1 cut(s)	257
BbvI	GCAGC	7 cut(s)	224, 297, 491, 539, 682, 685, 686
BccI	CCATC	4 cut(s)	46, 593, 597, 1030
BceAI	ACGGC	2 cut(s)	286, 928
BcoDI	GTCTC	1 cut(s)	148
BfaI	CTAG	3 cut(s)	258, 504, 656
BfmI	CTRYAG	1 cut(s)	612
BfuAI	ACCTGC	1 cut(s)	521
BglI	GCCNNNNNGGC	1 cut(s)	307
BisI	GCNGC	9 cut(s)	238, 311, 384, 471, 480, 528, 675, 696, 699
BlpI	GCTNAGC	1 cut(s)	233
BlsI	GCNGC	9 cut(s)	239, 312, 385, 472, 481, 529, 676, 697, 700
Bme18I	GGWCC	1 cut(s)	137
BmeT110I	CYCGRG	1 cut(s)	165
BmgT120I	GGNCC	3 cut(s)	137, 162, 163
BmiI	GGNNCC	5 cut(s)	36, 139, 164, 516, 966
BmsI	GCATC	2 cut(s)	201, 1016
BpiI	GAAGAC	1 cut(s)	257
BpmI	CTGGAG	1 cut(s)	130
Bpu1102I	GCTNAGC	1 cut(s)	233
Bsa29I	ATCGAT	1 cut(s)	41
BsaHI	GRCGYC	1 cut(s)	299
BsaWI	WCCGGW	1 cut(s)	31
Bsc4I	CCNNNNNNNGG	2 cut(s)	911, 1029
BseAI	TCCGGA	1 cut(s)	31
BseCI	ATCGAT	1 cut(s)	41
BseGI	GGATG	3 cut(s)	130, 359, 585
BseLI	CCNNNNNNNGG	2 cut(s)	911, 1029
BseRI	GAGGAG	1 cut(s)	903
BseSI	GKGCMC	1 cut(s)	166
BseXI	GCAGC	7 cut(s)	224, 297, 491, 539, 682, 685, 686
BsgI	GTGCAG	1 cut(s)	528
Bsh1285I	CGRYCG	1 cut(s)	45
BshFI	GGCC	1 cut(s)	164
BshVI	ATCGAT	1 cut(s)	41
BsiEI	CGRYCG	1 cut(s)	45
BsiHKCI	CYCGRG	1 cut(s)	165
BsiSI	CCGG	1 cut(s)	32
BslFI	GGGAC	1 cut(s)	123
BslI	CCNNNNNNNGG	2 cut(s)	911, 1029
BsmAI	GTCTC	1 cut(s)	148
BsmBI	CGTCTC	1 cut(s)	148
BsmFI	GGGAC	1 cut(s)	123
BsmI	GAATGC	1 cut(s)	472
BsnI	GGCC	1 cut(s)	164
BsoBI	CYCGRG	1 cut(s)	165
Bsp120I	GGGCCC	1 cut(s)	162
Bsp1286I	GDGCHC	1 cut(s)	166
Bsp13I	TCCGGA	1 cut(s)	31
Bsp143I	GATC	4 cut(s)	28, 42, 62, 1009
Bsp1720I	GCTNAGC	1 cut(s)	233
BspACI	CCGC	4 cut(s)	107, 150, 384, 470
BspANI	GGCC	1 cut(s)	164
BspDI	ATCGAT	1 cut(s)	41
BspEI	TCCGGA	1 cut(s)	31
BspLI	GGNNCC	5 cut(s)	36, 139, 164, 516, 966
BspMI	ACCTGC	1 cut(s)	521
BspPI	GGATC	3 cut(s)	23, 70, 1017
BspQI	GCTCTTC	1 cut(s)	636
BssMI	GATC	4 cut(s)	28, 42, 62, 1009
BssNI	GRCGYC	1 cut(s)	299
Bst4CI	ACNGT	4 cut(s)	137, 265, 720, 760
Bst6I	CTCTTC	2 cut(s)	108, 636
BstACI	GRCGYC	1 cut(s)	299
BstC8I	GCNNGC	3 cut(s)	180, 230, 653
BstDEI	CTNAG	1 cut(s)	233
BstF5I	GGATG	3 cut(s)	130, 359, 585
BstHHI	GCGC	2 cut(s)	26, 527
BstKTI	GATC	4 cut(s)	31, 45, 65, 1012
BstMAI	GTCTC	1 cut(s)	148
BstMBI	GATC	4 cut(s)	28, 42, 62, 1009
BstMCI	CGRYCG	1 cut(s)	45
BstMWI	GCNNNNNNNGC	8 cut(s)	234, 307, 383, 476, 479, 652, 671, 973
BstNSI	RCATGY	1 cut(s)	204
BstSFI	CTRYAG	1 cut(s)	612
BstSLI	GKGCMC	1 cut(s)	166
BstV1I	GCAGC	7 cut(s)	224, 297, 491, 539, 682, 685, 686
BstV2I	GAAGAC	1 cut(s)	257
BstX2I	RGATCY	1 cut(s)	28
BstYI	RGATCY	1 cut(s)	28
Bsu15I	ATCGAT	1 cut(s)	41
BsuRI	GGCC	1 cut(s)	164
BsuTUI	ATCGAT	1 cut(s)	41
BtsCI	GGATG	3 cut(s)	130, 359, 585
BveI	ACCTGC	1 cut(s)	521
Cac8I	GCNNGC	3 cut(s)	180, 230, 653
CfoI	GCGC	2 cut(s)	26, 527
Cfr13I	GGNCC	3 cut(s)	137, 162, 163
ClaI	ATCGAT	1 cut(s)	41
CseI	GACGC	2 cut(s)	88, 307
Csp6I	GTAC	1 cut(s)	721
CviAII	CATG	4 cut(s)	201, 444, 731, 875
CviQI	GTAC	1 cut(s)	721
DdeI	CTNAG	1 cut(s)	233
DpnI	GATC	4 cut(s)	30, 44, 64, 1011
DpnII	GATC	4 cut(s)	28, 42, 62, 1009
DraI	TTTAAA	3 cut(s)	292, 399, 598
Eam1104I	CTCTTC	2 cut(s)	108, 636
EarI	CTCTTC	2 cut(s)	108, 636
Eco24I	GRGCYC	1 cut(s)	166
Eco47I	GGWCC	1 cut(s)	137
Eco57I	CTGAAG	1 cut(s)	687
Eco88I	CYCGRG	1 cut(s)	165
EcoT38I	GRGCYC	1 cut(s)	166
Esp3I	CGTCTC	1 cut(s)	148
FaeI	CATG	4 cut(s)	204, 447, 734, 878
FaqI	GGGAC	1 cut(s)	123
FatI	CATG	4 cut(s)	200, 443, 730, 874
Fnu4HI	GCNGC	9 cut(s)	238, 311, 384, 471, 480, 528, 675, 696, 699
FokI	GGATG	3 cut(s)	137, 366, 572
FriOI	GRGCYC	1 cut(s)	166
Fsp4HI	GCNGC	9 cut(s)	238, 311, 384, 471, 480, 528, 675, 696, 699
FspBI	CTAG	3 cut(s)	258, 504, 656
GlaI	GCGC	2 cut(s)	25, 526
GluI	GCNGC	9 cut(s)	238, 311, 384, 471, 480, 528, 675, 696, 699
GsuI	CTGGAG	1 cut(s)	130
HaeIII	GGCC	1 cut(s)	164
HapII	CCGG	1 cut(s)	32
HgaI	GACGC	2 cut(s)	88, 307
HhaI	GCGC	2 cut(s)	26, 527
Hin1I	GRCGYC	1 cut(s)	299
Hin1II	CATG	4 cut(s)	204, 447, 734, 878
Hin6I	GCGC	2 cut(s)	24, 525
HinP1I	GCGC	2 cut(s)	24, 525
HindIII	AAGCTT	2 cut(s)	272, 375
HinfI	GANTC	3 cut(s)	10, 186, 457
HpaII	CCGG	1 cut(s)	32
HphI	GGTGA	4 cut(s)	19, 29, 748, 939
Hpy166II	GTNNAC	1 cut(s)	752
Hpy188I	TCNGA	2 cut(s)	453, 465
Hpy188III	TCNNGA	3 cut(s)	32, 786, 864
Hpy8I	GTNNAC	1 cut(s)	752
Hpy99I	CGWCG	3 cut(s)	50, 104, 301
HpyAV	CCTTC	7 cut(s)	14, 122, 551, 567, 630, 783, 954
HpyCH4III	ACNGT	4 cut(s)	137, 265, 720, 760
HpyCH4V	TGCA	8 cut(s)	240, 340, 364, 509, 774, 838, 961, 1029
HpyF10VI	GCNNNNNNNGC	8 cut(s)	234, 307, 383, 476, 479, 652, 671, 973
HpyF3I	CTNAG	1 cut(s)	233
Hsp92I	GRCGYC	1 cut(s)	299
Hsp92II	CATG	4 cut(s)	204, 447, 734, 878
HspAI	GCGC	2 cut(s)	24, 525
Kpn2I	TCCGGA	1 cut(s)	31
Kzo9I	GATC	4 cut(s)	28, 42, 62, 1009
LguI	GCTCTTC	1 cut(s)	636
LmnI	GCTCC	2 cut(s)	34, 964
Lsp1109I	GCAGC	7 cut(s)	224, 297, 491, 539, 682, 685, 686
LweI	GCATC	2 cut(s)	201, 1016
MaeI	CTAG	3 cut(s)	258, 504, 656
MaeIII	GTNAC	2 cut(s)	131, 356
MalI	GATC	4 cut(s)	30, 44, 64, 1011
MboI	GATC	4 cut(s)	28, 42, 62, 1009
MfeI	CAATTG	2 cut(s)	341, 824
MflI	RGATCY	1 cut(s)	28
MhlI	GDGCHC	1 cut(s)	166
MluCI	AATT	6 cut(s)	206, 334, 341, 775, 824, 868
MnlI	CCTC	4 cut(s)	115, 505, 881, 994
MroI	TCCGGA	1 cut(s)	31
MseI	TTAA	4 cut(s)	291, 398, 597, 1042
MspA1I	CMGCKG	2 cut(s)	150, 677
MspI	CCGG	1 cut(s)	32
MunI	CAATTG	2 cut(s)	341, 824
Mva1269I	GAATGC	1 cut(s)	472
MwoI	GCNNNNNNNGC	8 cut(s)	234, 307, 383, 476, 479, 652, 671, 973
NdeII	GATC	4 cut(s)	28, 42, 62, 1009
NlaIII	CATG	4 cut(s)	204, 447, 734, 878
NlaIV	GGNNCC	5 cut(s)	36, 139, 164, 516, 966
NspI	RCATGY	1 cut(s)	204
PciSI	GCTCTTC	1 cut(s)	636
PctI	GAATGC	1 cut(s)	472
PfeI	GAWTC	3 cut(s)	10, 186, 457
PkrI	GCNGC	9 cut(s)	239, 312, 385, 472, 481, 529, 676, 697, 700
Ple19I	CGATCG	1 cut(s)	45
PspN4I	GGNNCC	5 cut(s)	36, 139, 164, 516, 966
PspOMI	GGGCCC	1 cut(s)	162
PspPI	GGNCC	3 cut(s)	137, 162, 163
PsuI	RGATCY	1 cut(s)	28
PvuI	CGATCG	1 cut(s)	45
PvuII	CAGCTG	1 cut(s)	677
RsaI	GTAC	1 cut(s)	722
RsaNI	GTAC	1 cut(s)	721
SapI	GCTCTTC	1 cut(s)	636
SaqAI	TTAA	4 cut(s)	291, 398, 597, 1042
SatI	GCNGC	9 cut(s)	238, 311, 384, 471, 480, 528, 675, 696, 699
Sau3AI	GATC	4 cut(s)	28, 42, 62, 1009
Sau96I	GGNCC	3 cut(s)	137, 162, 163
SduI	GDGCHC	1 cut(s)	166
SfaNI	GCATC	2 cut(s)	201, 1016
SfcI	CTRYAG	1 cut(s)	612
SinI	GGWCC	1 cut(s)	137
Sse9I	AATT	6 cut(s)	206, 334, 341, 775, 824, 868
SsiI	CCGC	4 cut(s)	107, 150, 384, 470
SspMI	CTAG	3 cut(s)	258, 504, 656
TaaI	ACNGT	4 cut(s)	137, 265, 720, 760
TaqI	TCGA	2 cut(s)	41, 102
TasI	AATT	6 cut(s)	206, 334, 341, 775, 824, 868
TauI	GCSGC	2 cut(s)	386, 473
TfiI	GAWTC	3 cut(s)	10, 186, 457
Tru1I	TTAA	4 cut(s)	291, 398, 597, 1042
Tru9I	TTAA	4 cut(s)	291, 398, 597, 1042
TseI	GCWGC	7 cut(s)	237, 310, 479, 527, 674, 695, 698
TspDTI	ATGAA	4 cut(s)	68, 141, 470, 654
VpaK11BI	GGWCC	1 cut(s)	137
XapI	RAATTY	2 cut(s)	334, 868
XceI	RCATGY	1 cut(s)	204
XspI	CTAG	3 cut(s)	258, 504, 656

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.