Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000135.1

Orthogroup ID

OG0008684

Physical Location & Seq

Genomic Coordinates Forward (+)

174447 .. 183948

Gene Structure 9502 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 5025 bp

atgggcgaacatgaagggtgggcacagccagcaagtgggctattgctgaatggcctattgcccaatgaagccgcctccgtgatgcgagtgctggattccgagcgatggaccaaggcggaggagagaactgcggagcttattgcctgcattcagcccaatccaccctcagaagagcgcagaattgccgttgctgattatgtgcagcggcttatcctgaagtgcttcccatgccaggtgttcacttttgggtctgtgcccctcaagacttatctgcctgatggagatattgacctcacagccttcagcaagactcaaagtttgaaagactcatgggcccatcaggttcgtgatacgctggagaatgaggagaagaatgagaatgctgaatttcgtgtcaaagaggttcaatacattcaagctgaagtaaagataatcaagtgccttgtggaaaacattgtagtagacatatcctttaatcagctgggaggcttgtgcaccctttgtttccttgaggaggtcgatcatctcataaatcaaaatcatttgttcaagcgtagtattatactgataaaggcctggtgttattatgagagccgaatactaggcgctcaccatggacttatctccacctatgctttggaaacattggttttatacatttttcatgttttcaacaactcctttgctggaccacttgaggtcttgtatcgctttctagagttctttagtaagtttgactgggagaacttttgtgttagcttaaggggtcctgtgcccattagttctcttccagatgtaactgccgaacctcctcgaaaagatggtggagagttactactaagcgaagtgtttcttgatgcgtgtagcgcagtgtatgctgtccgccctggtggtcaagaaaatcagggccaagcttttgtttccaaacattttaatgttattgatcctttgagaatcaacaacaaccttggacgtagtgttagtaaagggtgggcacagccagcaagtgggctattgctgaatggcctattgcccaatgaagccgcctccgtgatgcgagtgctggattccgagcgatggaccaaggcggaggagagaactgcggagcttattgcctgcattcagcccaatccaccctcagaagagcgcagaattgccgttgctgattatgtgcagcggcttatcctgaagtgcttcccatgccaggtgttcacttttgggtctgtgcccctcaagacttatctgcctgatggagatattgacctcacagccttcagcaagactcaaagtttgaaagactcatgggcccatcaggttcgtgatacgctggagaatgaggagaagaatgagaatgctgaatttcgtgtcaaagaggttcaatacattcaagctgaagtaaagataatcaagtgccttgtggaaaacattgtagtagacatatcctttaatcagctgggaggcttgtgcaccctttgtttccttgaggaggtcgatcatctcataaatcaaaatcatttgttcaagcgtagtattatactgataaaggcctggtgttattatgagagccgaatactcggcgctcaccatggacttatctccacctatgctttggaaacattggttttatacatttttcatgttttcaacaactcctttgctggaccacttgaggtcttgtatcgctttctagagttctttagtaagtttgactgggagaacttttgtgttagcttaaggggtcctgtgcccattagttctcttccagatgtaactgccgaacctcctcgaaaagatggtggagagttactactaagcgaagtgtttcttgatgcgtgtagcgcagtgtatgctgtccgccctggtggtcaagaaaatcagggccaagcttttgtttccaaacattttaatgttattgatcctttgagaatcaacaacaaccttggacgtagtgttagtaaaggtaacttctttaggatacgcagtgcatttgcatttggggctaaaaggctggccaggttgcttgattgttcaaaggaggatctatgtttcgaagtaaatcagttttttctcaacacttgggatagacatggaagtggtcatcgacctgatgcaccacgtaatgatcttaggcacttgcgactttcaaatgcagaccacttacatgggtctgagaatcgcaggaacaacttaagcggcaaaaaaaatgaaacttcctctggtcgagatactcaaggtgagggaaaacatggttcacttagtgtttcctctcagcagggtagttatcctatagaaagcatatcacggaacagtgttttttctagtgtaactgatggtcaaagccaaaagaatcacgtgaacatgaacattgggagggcctctgatcagattagaaaggaaatcaatcccgacctgggtgcacatgtggataaaggtcagagaaaaccggatagcttggttaatgaccttcacgggaggtttctttttgcaaggacacgctctagtcctgagcttactgatacatatagtgaagttccctctcaaggtctgcggaatagggccccagagagtgggaaaggccaaacttattccacgaggttggataatagcaggaggaagaaccttgaggctgataatttagcaagccacagatttatatcttcagctgatgatccttcatctgctaaccatattccatcccatcaaagccttgatgttgtggttgattcaaataatagctaccaggatgaatctggttcgagtactgttgctgaagattttccgtctatttcagggacacaagggatgcaccaggaggagcaagatcttgttaacatgatggcatcttctgcagctcatggtttcaatggacaggttcatcttcccctgaatttgggttccggtcatttaccatttccaatcccatcttctgttcttgcttcgatgggatatgctcagaggaatatgggtggcatctttcccacaaattttcccttgatggagagtccttggggaacgaatatgcattttcctcaaggtgttgttccgtcacctttaactcattatttccctggcatggggttgacatcaaatcctgaagaatcggtggaacctggtaatgaagattttggttctgtggagatgaactcaagtgaaactgagcatgatttctggcacaaccaggagaggggatctactagtggatttgatcatgataatggaggtttggaaatgctcgaggcagatgataggcaacagtcaacctcagctggttataactcccatccttcatctcggataggcgctgctgtaagttctatgcgagttcaacaaaagtcccctaaagaaagccgagattcaacgagagaagatcatgtcgatgattttcagtatcaagataaccgaggaaatgaggtatactttgatgaccgagtgagttctaggtcgttgtcggccaattatactagttctgcaagaagcaagacctcctctgagagttcttgggaaggatcatcagcaaaagtgtcaaagtcaacaagggaaaaacggggcagaaaagctgctctgtcaacagctccatctacctcatatgggaaaggtaagagtgtgtctgaacattcttctactcaggcagatgatgaaaacaaagattggaatctgccaacaactttaggtgctgaaatggtagaaagaagcacactatctcaacctgttgcttccttgcctgttccaagacatcaaatgccgggttttgaaccatctcaaacaagtggatcagattcgctgatgcctttcccagttctcttagggcctggctcacgacagagagctacaaatgattctggtgctacctatgcattttatcctacgggacctccagttccatttgttacaatgctaccatattacaatttcccagcagaggcaggaacttcagatgtatcaagccaattcagtagggaagatggacctgaaagtgattctggtcagaactttgattccgctgaaggaattgatcaacctgagttaagaatttctaactccatgggaagggttgctcctattgagccttctgagtataaatctgacatccttcacagtgactttgccagccattatcagaatttgcagtttggacggttatgccaaaatcctcggcattctccacctatggtttatccttcacctgttatggtgccccctgcctacttgcaagggcgatttccttgggatggtcctgggagacctctctcagccaatatgaatctcatcactcagcttatgaattatggccctcgtgttgttcctgttgctgcgcctctccagtctgtttctaacagacctgctagtgtgtatcaacgctatgtcgatgagattccaagataccgcagtgggacagggacctaccttccaaatcctaaggtttctgtaagggaccgccatacttcaagtacaagaagggggagtttcaattatgacagaaatgaccaccatggtgatagagaagggaactggaatgccaactcaaagtcacgagcttctgcacgcaaccacagtcgcagccaagctgagaagccaaattcaagagtagaccgtatggcagctagtgagagccgtgctgagaggccatggagctcacatagacatgattcattcccttcatatcaatctcaaaacggtcctatccgctcaagtactacacagagtggttccactaatgtggcgtatggcatgtatccactaccaggcatgaatcccggtggggtgtcatcaaatggacctaccatgccccctcttgtcatgctatatccttatgatcataatactggctatgggccaccacctgccgaacagctggagtttggttctcttggaccagtgggtttctcaggtttgaatgaagtttcacagttaaatgagggaagtcggatgggtggagtattcgaggaacaaagatttcacggtggctcaactcaacgatcgtcacctgatcagccttcctcaccacacatccaaaggggagtttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004652 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0006139 GO:0006396 GO:0006399 GO:0006401 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010467 GO:0016070 GO:0016072 GO:0016074 GO:0016075 GO:0016077 GO:0016078 GO:0016740 GO:0016772 GO:0016779 GO:0019439 GO:0031123 GO:0031499 GO:0031974 GO:0031981 GO:0032991 GO:0034641 GO:0034655 GO:0034660 GO:0034661 GO:0043021 GO:0043023 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043629 GO:0043630 GO:0043631 GO:0043632 GO:0043633 GO:0043634 GO:0044237 GO:0044238 GO:0044248 GO:0044260 GO:0044265 GO:0044270 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0044877 GO:0046483 GO:0046700 GO:0070013 GO:0070566 GO:0071025 GO:0071027 GO:0071029 GO:0071035 GO:0071046 GO:0071704 GO:0090304 GO:1901360 GO:1901361 GO:1901575 GO:1990817

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NTP_transf_2

Protein Analysis

1674

Amino Acids

185.77

Weight (kDa)

5.88

Isoelectric Point (pI)

48.23

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MTPAP-like_central	PF22600	44 - 164	7.9e-09	Poly(A) RNA polymerase, mitochondrial-like, central palm domain
PAP-OAS1	PF26180	177 - 330	1.4e-76	PAP/OAS1 substrate-binding domain
MTPAP-like_central	PF22600	368 - 488	7.9e-09	Poly(A) RNA polymerase, mitochondrial-like, central palm domain
PAP-OAS1	PF26180	501 - 693	1.1e-92	PAP/OAS1 substrate-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0008684)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G61690 AT3G61690 AT3G61690
fragaria_vesca	FvH4_7g16250 FvH4_7g16250 FvH4_7g16250 FvH4_7g16250
malus_domestica	MD01G1079200.v1.1 MD07G1148100.v1.1
prunus_persica	Prupe.2G186200_v2.0.a1 Prupe.2G186200_v2.0.a1
pyrus_communis	pycom01g10750 pycom07g14710
rosa_chinensis	RchiOBHm_Chr1g0359271
rosa_laevigata	RLG00000027887
rosa_multiflora	Rmu_ssc0000135.1_g000035
rosa_roxburghii	Rroxscaffold_4G00297170
rosa_rugosa	Rorug01G0269000
rosa_samantha	Rh1AG283000 Rh1BG249200 Rh1CG267000 Rh1DG278100
rosa_wichuraiana	Rw1G025120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	3273
AarI	CACCTGC	1 cut(s)	4849
Acc36I	ACCTGC	2 cut(s)	4348, 4849
AccB1I	GGYRCC	1 cut(s)	4192
AccB7I	CCANNNNNTGG	3 cut(s)	35, 1007, 2567
AccBSI	CCGCTC	1 cut(s)	4686
AccI	GTMKAC	4 cut(s)	462, 1434, 3414, 4587
AclWI	GGATC	7 cut(s)	938, 1910, 2046, 2663, 3196, 3514, 3778
AcoI	YGGCCR	2 cut(s)	2010, 3450
AcsI	RAATTY	7 cut(s)	386, 1358, 2887, 2983, 4029, 4120, 4576
AcvI	CACGTG	1 cut(s)	2353
AdeI	CACNNNGTG	2 cut(s)	2258, 4703
AfaI	GTAC	3 cut(s)	2761, 4450, 4693
AflII	CTTAAG	3 cut(s)	760, 1732, 2188
AflIII	ACRYGT	1 cut(s)	2419
AhlI	ACTAGT	2 cut(s)	3194, 3461
AjuI	GAANNNNNNNTTGG	2 cut(s)	2908, 2940
AleI	CACNNNNGTG	2 cut(s)	4491, 4715
AloI	GAACNNNNNNTCC	4 cut(s)	3861, 3893, 3980, 4012
Alw21I	GWGCWC	4 cut(s)	497, 1469, 2419, 4634
Alw26I	GTCTC	1 cut(s)	4234
Alw44I	GTGCAC	3 cut(s)	493, 1465, 2415
AlwI	GGATC	7 cut(s)	938, 1910, 2046, 2663, 3196, 3514, 3778
Ama87I	CYCGRG	1 cut(s)	3233
ApaI	GGGCCC	3 cut(s)	337, 1309, 2560
ApaLI	GTGCAC	3 cut(s)	493, 1465, 2415
ApeKI	GCWGC	8 cut(s)	202, 1174, 2849, 3302, 3557, 4310, 4557, 4598
ApoI	RAATTY	7 cut(s)	386, 1358, 2887, 2983, 4029, 4120, 4576
ArsI	GACNNNNNNTTYG	4 cut(s)	301, 333, 1273, 1305
Asp700I	GAANNNNTTC	5 cut(s)	221, 849, 1193, 1821, 2775
AspLEI	GCGC	8 cut(s)	177, 608, 869, 1149, 1580, 1841, 3302, 4315
AsuC2I	CCSGG	2 cut(s)	3744, 4755
AsuHPI	GGTGA	8 cut(s)	602, 1574, 2246, 3039, 4173, 4505, 4974, 4992
AsuII	TTCGAA	1 cut(s)	2049
AvaI	CYCGRG	1 cut(s)	3233
AxyI	CCTNAGG	1 cut(s)	4416
BaeI	ACNNNNGTAYC	2 cut(s)	4372, 4405
BalI	TGGCCA	1 cut(s)	2012
BanI	GGYRCC	1 cut(s)	4192
BanII	GRGCYC	4 cut(s)	337, 1309, 2560, 4634
BauI	CACGAG	3 cut(s)	2590, 4293, 4530
BbrPI	CACGTG	1 cut(s)	2353
Bbv12I	GWGCWC	4 cut(s)	497, 1469, 2419, 4634
BbvCI	CCTCAGC	1 cut(s)	3262
BbvI	GCAGC	8 cut(s)	214, 1186, 2861, 3289, 3544, 4297, 4569, 4610
BceAI	ACGGC	3 cut(s)	170, 1142, 4596
BcgI	CGANNNNNNTGC	2 cut(s)	2396, 2430
BciVI	GTATCC	2 cut(s)	1968, 4743
BclI	TGATCA	5 cut(s)	2380, 3205, 4012, 4813, 4987
BcnI	CCSGG	2 cut(s)	3744, 4755
BcoDI	GTCTC	1 cut(s)	4234
BcuI	ACTAGT	2 cut(s)	3194, 3461
BfmI	CTRYAG	2 cut(s)	2286, 2847
BfoI	RGCGCY	3 cut(s)	609, 1581, 3303
BfrI	CTTAAG	3 cut(s)	760, 1732, 2188
BfuAI	ACCTGC	2 cut(s)	4348, 4849
BfuI	GTATCC	2 cut(s)	1968, 4743
BglII	AGATCT	1 cut(s)	2821
BmcAI	AGTACT	2 cut(s)	2761, 4693
BmeT110I	CYCGRG	1 cut(s)	3233
BmrI	ACTGGG	3 cut(s)	748, 1720, 3788
BmsI	GCATC	9 cut(s)	72, 847, 1044, 1819, 2098, 2793, 2849, 2979, 3774
BmuI	ACTGGG	3 cut(s)	748, 1720, 3788
BplI	GAGNNNNNCTC	2 cut(s)	3128, 3160
BpmI	CTGGAG	5 cut(s)	377, 1349, 3858, 4304, 4874
Bpu10I	CCTNAGC	2 cut(s)	2505, 3262
Bpu14I	TTCGAA	1 cut(s)	2049
BpuMI	CCSGG	2 cut(s)	3744, 4755
BsaAI	YACGTR	2 cut(s)	2117, 2353
BsaBI	GATNNNNATC	2 cut(s)	2653, 3651
BsaI	GGTCTC	1 cut(s)	4234
BsaWI	WCCGGW	2 cut(s)	2443, 2897
BsaXI	ACNNNNNCTCC	2 cut(s)	3856, 3886
Bse1I	ACTGG	8 cut(s)	743, 1715, 3794, 3875, 4321, 4514, 4828, 4874
Bse21I	CCTNAGG	1 cut(s)	4416
Bse8I	GATNNNNATC	2 cut(s)	2653, 3651
BseGI	GGATG	8 cut(s)	2693, 2749, 2808, 3280, 4086, 4234, 4932, 5007
BseJI	GATNNNNATC	2 cut(s)	2653, 3651
BseNI	ACTGG	8 cut(s)	743, 1715, 3794, 3875, 4321, 4514, 4828, 4874
BseXI	GCAGC	8 cut(s)	214, 1186, 2861, 3289, 3544, 4297, 4569, 4610
BseYI	CCCAGC	3 cut(s)	481, 1453, 3913
BsgI	GTGCAG	3 cut(s)	221, 1193, 4524
Bsh1285I	CGRYCG	1 cut(s)	4979
BshNI	GGYRCC	1 cut(s)	4192
BsiEI	CGRYCG	1 cut(s)	4979
BsiHKAI	GWGCWC	4 cut(s)	497, 1469, 2419, 4634
BsiHKCI	CYCGRG	1 cut(s)	3233
BsiSI	CCGG	4 cut(s)	2444, 2898, 3743, 4755
BslFI	GGGAC	6 cut(s)	2806, 3319, 3882, 4405, 4411, 4445
BsmAI	GTCTC	1 cut(s)	4234
BsmFI	GGGAC	6 cut(s)	2806, 3319, 3882, 4405, 4411, 4445
BsmI	GAATGC	6 cut(s)	147, 385, 1119, 1357, 4156, 4519
Bso31I	GGTCTC	1 cut(s)	4234
BsoBI	CYCGRG	1 cut(s)	3233
Bsp119I	TTCGAA	1 cut(s)	2049
Bsp120I	GGGCCC	3 cut(s)	333, 1305, 2556
Bsp19I	CCATGG	5 cut(s)	613, 1585, 4041, 4489, 4625
BspHI	TCATGA	1 cut(s)	3208
BspMAI	CTGCAG	1 cut(s)	2851
BspMI	ACCTGC	2 cut(s)	4348, 4849
BspPI	GGATC	7 cut(s)	938, 1910, 2046, 2663, 3196, 3514, 3778
BspQI	GCTCTTC	2 cut(s)	165, 1137
BspT104I	TTCGAA	1 cut(s)	2049
BspT107I	GGYRCC	1 cut(s)	4192
BspTI	CTTAAG	3 cut(s)	760, 1732, 2188
BspTNI	GGTCTC	1 cut(s)	4234
BsrBI	CCGCTC	1 cut(s)	4686
BsrI	ACTGG	8 cut(s)	743, 1715, 3794, 3875, 4321, 4514, 4828, 4874
BssNAI	GTATAC	1 cut(s)	3415
BssSI	CACGAG	3 cut(s)	2590, 4293, 4530
Bst1107I	GTATAC	1 cut(s)	3415
Bst2BI	CACGAG	3 cut(s)	2590, 4293, 4530
Bst6I	CTCTTC	4 cut(s)	165, 792, 1137, 1764
BstAFI	CTTAAG	3 cut(s)	760, 1732, 2188
BstAPI	GCANNNNNTGC	3 cut(s)	875, 1847, 2846
BstBAI	YACGTR	2 cut(s)	2117, 2353
BstBI	TTCGAA	1 cut(s)	2049
BstC8I	GCNNGC	8 cut(s)	30, 145, 1002, 1117, 2010, 2641, 4108, 4543
BstDSI	CCRYGG	5 cut(s)	613, 1585, 4041, 4489, 4625
BstENI	CCTNNNNNAGG	2 cut(s)	512, 1484
BstF5I	GGATG	8 cut(s)	2693, 2749, 2808, 3280, 4086, 4234, 4932, 5007
BstH2I	RGCGCY	3 cut(s)	609, 1581, 3303
BstHHI	GCGC	8 cut(s)	177, 608, 869, 1149, 1580, 1841, 3302, 4315
BstMAI	GTCTC	1 cut(s)	4234
BstMCI	CGRYCG	1 cut(s)	4979
BstNSI	RCATGY	2 cut(s)	2423, 4732
BstSFI	CTRYAG	2 cut(s)	2286, 2847
BstV1I	GCAGC	8 cut(s)	214, 1186, 2861, 3289, 3544, 4297, 4569, 4610
BstX2I	RGATCY	3 cut(s)	2038, 2821, 3188
BstXI	CCANNNNNNTGG	3 cut(s)	2162, 2596, 4717
BstYI	RGATCY	3 cut(s)	2038, 2821, 3188
BstZ17I	GTATAC	1 cut(s)	3415
Bsu36I	CCTNAGG	1 cut(s)	4416
BsuI	GTATCC	2 cut(s)	1968, 4743
BtgI	CCRYGG	5 cut(s)	613, 1585, 4041, 4489, 4625
BtgZI	GCGATG	2 cut(s)	118, 1090
BtsCI	GGATG	8 cut(s)	2693, 2749, 2808, 3280, 4086, 4234, 4932, 5007
BtsI	GCAGTG	4 cut(s)	876, 1848, 1987, 4393
BtsIMutI	CAGTG	7 cut(s)	876, 1848, 1987, 2314, 4102, 4393, 4881
BveI	ACCTGC	2 cut(s)	4348, 4849
Cac8I	GCNNGC	8 cut(s)	30, 145, 1002, 1117, 2010, 2641, 4108, 4543
CciI	TCATGA	1 cut(s)	3208
CfoI	GCGC	8 cut(s)	177, 608, 869, 1149, 1580, 1841, 3302, 4315
CsiI	ACCWGGT	1 cut(s)	3109
Csp6I	GTAC	3 cut(s)	2760, 4449, 4692
CviQI	GTAC	3 cut(s)	2760, 4449, 4692
DraIII	CACNNNGTG	2 cut(s)	2258, 4703
EaeI	YGGCCR	2 cut(s)	2010, 3450
Eam1104I	CTCTTC	4 cut(s)	165, 792, 1137, 1764
EarI	CTCTTC	4 cut(s)	165, 792, 1137, 1764
EciI	GGCGGA	4 cut(s)	131, 872, 1103, 1844
Ecl136II	GAGCTC	1 cut(s)	4632
Eco147I	AGGCCT	2 cut(s)	575, 1547
Eco24I	GRGCYC	4 cut(s)	337, 1309, 2560, 4634
Eco31I	GGTCTC	1 cut(s)	4234
Eco53kI	GAGCTC	1 cut(s)	4632
Eco72I	CACGTG	1 cut(s)	2353
Eco81I	CCTNAGG	1 cut(s)	4416
Eco88I	CYCGRG	1 cut(s)	3233
EcoICRI	GAGCTC	1 cut(s)	4632
EcoNI	CCTNNNNNAGG	2 cut(s)	512, 1484
EcoO109I	RGGNCCY	8 cut(s)	767, 1739, 2373, 2556, 2557, 3806, 3869, 4398
EcoT22I	ATGCAT	2 cut(s)	3024, 3856
EcoT38I	GRGCYC	4 cut(s)	337, 1309, 2560, 4634
FalI	AAGNNNNNCTT	4 cut(s)	837, 869, 1809, 1841
FaqI	GGGAC	6 cut(s)	2806, 3319, 3882, 4405, 4411, 4445
FauNDI	CATATG	1 cut(s)	3586
FbaI	TGATCA	5 cut(s)	2380, 3205, 4012, 4813, 4987
FblI	GTMKAC	4 cut(s)	462, 1434, 3414, 4587
FokI	GGATG	8 cut(s)	2680, 2756, 2815, 3267, 4073, 4241, 4939, 4994
FriOI	GRGCYC	4 cut(s)	337, 1309, 2560, 4634
GlaI	GCGC	8 cut(s)	176, 607, 868, 1148, 1579, 1840, 3301, 4314
GsaI	CCCAGC	3 cut(s)	485, 1457, 3917
GsuI	CTGGAG	5 cut(s)	377, 1349, 3858, 4304, 4874
HaeII	RGCGCY	3 cut(s)	609, 1581, 3303
HapII	CCGG	4 cut(s)	2444, 2898, 3743, 4755
HhaI	GCGC	8 cut(s)	177, 608, 869, 1149, 1580, 1841, 3302, 4315
Hin6I	GCGC	8 cut(s)	175, 606, 867, 1147, 1578, 1839, 3300, 4313
HinP1I	GCGC	8 cut(s)	175, 606, 867, 1147, 1578, 1839, 3300, 4313
HincII	GTYRAC	5 cut(s)	2830, 3081, 3258, 3531, 3567
HindII	GTYRAC	5 cut(s)	2830, 3081, 3258, 3531, 3567
HindIII	AAGCTT	2 cut(s)	912, 1884
HpaI	GTTAAC	1 cut(s)	2830
HpaII	CCGG	4 cut(s)	2444, 2898, 3743, 4755
HphI	GGTGA	8 cut(s)	602, 1574, 2246, 3039, 4173, 4505, 4974, 4992
HpyCH4IV	ACGT	4 cut(s)	973, 1945, 2116, 2352
HpySE526I	ACGT	4 cut(s)	973, 1945, 2116, 2352
HspAI	GCGC	8 cut(s)	175, 606, 867, 1147, 1578, 1839, 3300, 4313
Ksp22I	TGATCA	5 cut(s)	2380, 3205, 4012, 4813, 4987
KspAI	GTTAAC	1 cut(s)	2830
LguI	GCTCTTC	2 cut(s)	165, 1137
LmnI	GCTCC	6 cut(s)	133, 1105, 2815, 3577, 4060, 4629
Lsp1109I	GCAGC	8 cut(s)	214, 1186, 2861, 3289, 3544, 4297, 4569, 4610
LweI	GCATC	9 cut(s)	72, 847, 1044, 1819, 2098, 2793, 2849, 2979, 3774
MabI	ACCWGGT	1 cut(s)	3109
MaeII	ACGT	4 cut(s)	973, 1945, 2116, 2352
MbiI	CCGCTC	1 cut(s)	4686
MflI	RGATCY	3 cut(s)	2038, 2821, 3188
MlsI	TGGCCA	1 cut(s)	2012
MluNI	TGGCCA	1 cut(s)	2012
MlyI	GAGTC	5 cut(s)	304, 320, 1276, 1292, 3010
MmeI	TCCRAC	2 cut(s)	2577, 4904
Mox20I	TGGCCA	1 cut(s)	2012
Mph1103I	ATGCAT	2 cut(s)	3024, 3856
MroXI	GAANNNNTTC	5 cut(s)	221, 849, 1193, 1821, 2775
MscI	TGGCCA	1 cut(s)	2012
MslI	CAYNNNNRTG	9 cut(s)	933, 1905, 2091, 2160, 3213, 3375, 4491, 4641, 4715
Msp20I	TGGCCA	1 cut(s)	2012
MspA1I	CMGCKG	8 cut(s)	205, 481, 1177, 1453, 2663, 3266, 4001, 4852
MspCI	CTTAAG	3 cut(s)	760, 1732, 2188
MspI	CCGG	4 cut(s)	2444, 2898, 3743, 4755
Mva1269I	GAATGC	6 cut(s)	147, 385, 1119, 1357, 4156, 4519
NciI	CCSGG	2 cut(s)	3744, 4755
NcoI	CCATGG	5 cut(s)	613, 1585, 4041, 4489, 4625
NdeI	CATATG	1 cut(s)	3586
NmeAIII	GCCGAG	3 cut(s)	1554, 3374, 4132
NmuCI	GTSAC	4 cut(s)	3045, 4097, 4527, 4980
NsiI	ATGCAT	2 cut(s)	3024, 3856
NspI	RCATGY	2 cut(s)	2423, 4732
NspV	TTCGAA	1 cut(s)	2049
OliI	CACNNNNGTG	2 cut(s)	4491, 4715
PaeR7I	CTCGAG	1 cut(s)	3233
PagI	TCATGA	1 cut(s)	3208
PaqCI	CACCTGC	1 cut(s)	4849
PceI	AGGCCT	2 cut(s)	575, 1547
PciI	ACATGT	1 cut(s)	2419
PciSI	GCTCTTC	2 cut(s)	165, 1137
PctI	GAATGC	6 cut(s)	147, 385, 1119, 1357, 4156, 4519
PdmI	GAANNNNTTC	5 cut(s)	221, 849, 1193, 1821, 2775
PflMI	CCANNNNNTGG	3 cut(s)	35, 1007, 2567
Ple19I	CGATCG	1 cut(s)	4979
PleI	GAGTC	5 cut(s)	304, 320, 1276, 1292, 3009
PmaCI	CACGTG	1 cut(s)	2353
PmlI	CACGTG	1 cut(s)	2353
PpsI	GAGTC	5 cut(s)	304, 320, 1276, 1292, 3009
Ppu21I	YACGTR	2 cut(s)	2117, 2353
PpuMI	RGGWCCY	4 cut(s)	767, 1739, 3869, 4398
PscI	ACATGT	1 cut(s)	2419
PsiI	TTATAA	1 cut(s)	3273
Psp124BI	GAGCTC	1 cut(s)	4634
Psp5II	RGGWCCY	4 cut(s)	767, 1739, 3869, 4398
PspCI	CACGTG	1 cut(s)	2353
PspFI	CCCAGC	3 cut(s)	481, 1453, 3913
PspOMI	GGGCCC	3 cut(s)	333, 1305, 2556
PspPPI	RGGWCCY	4 cut(s)	767, 1739, 3869, 4398
PspXI	VCTCGAGB	1 cut(s)	3233
PstI	CTGCAG	1 cut(s)	2851
PsuI	RGATCY	3 cut(s)	2038, 2821, 3188
PvuI	CGATCG	1 cut(s)	4979
PvuII	CAGCTG	5 cut(s)	481, 1453, 2663, 3266, 4852
RsaI	GTAC	3 cut(s)	2761, 4450, 4693
RsaNI	GTAC	3 cut(s)	2760, 4449, 4692
RseI	CAYNNNNRTG	9 cut(s)	933, 1905, 2091, 2160, 3213, 3375, 4491, 4641, 4715
SacI	GAGCTC	1 cut(s)	4634
SapI	GCTCTTC	2 cut(s)	165, 1137
ScaI	AGTACT	2 cut(s)	2761, 4693
SchI	GAGTC	5 cut(s)	304, 320, 1276, 1292, 3010
SexAI	ACCWGGT	1 cut(s)	3109
SfaNI	GCATC	9 cut(s)	72, 847, 1044, 1819, 2098, 2793, 2849, 2979, 3774
SfcI	CTRYAG	2 cut(s)	2286, 2847
Sfr274I	CTCGAG	1 cut(s)	3233
SfuI	TTCGAA	1 cut(s)	2049
SlaI	CTCGAG	1 cut(s)	3233
SmiMI	CAYNNNNRTG	9 cut(s)	933, 1905, 2091, 2160, 3213, 3375, 4491, 4641, 4715
SpeI	ACTAGT	2 cut(s)	3194, 3461
SseBI	AGGCCT	2 cut(s)	575, 1547
SstI	GAGCTC	1 cut(s)	4634
StuI	AGGCCT	2 cut(s)	575, 1547
TaiI	ACGT	4 cut(s)	976, 1948, 2119, 2355
TaqII	GACCGA	1 cut(s)	3441
TatI	WGTACW	3 cut(s)	2759, 4448, 4691
TauI	GCSGC	5 cut(s)	74, 208, 1046, 1180, 2196
TscAI	CASTG	7 cut(s)	876, 1848, 1987, 2314, 4102, 4393, 4881
TseFI	GTSAC	4 cut(s)	3045, 4097, 4527, 4980
TseI	GCWGC	8 cut(s)	202, 1174, 2849, 3302, 3557, 4310, 4557, 4598
Tsp45I	GTSAC	4 cut(s)	3045, 4097, 4527, 4980
TspGWI	ACGGA	5 cut(s)	67, 1039, 2317, 2769, 3033
TspRI	CASTG	7 cut(s)	876, 1848, 1987, 2314, 4102, 4393, 4881
Van91I	CCANNNNNTGG	3 cut(s)	35, 1007, 2567
Vha464I	CTTAAG	3 cut(s)	760, 1732, 2188
VneI	GTGCAC	3 cut(s)	493, 1465, 2415
XagI	CCTNNNNNAGG	2 cut(s)	512, 1484
XapI	RAATTY	7 cut(s)	386, 1358, 2887, 2983, 4029, 4120, 4576
XbaI	TCTAGA	2 cut(s)	715, 1687
XceI	RCATGY	2 cut(s)	2423, 4732
XcmI	CCANNNNNNNNNTGG	3 cut(s)	634, 1606, 2747
XhoI	CTCGAG	1 cut(s)	3233
XmiI	GTMKAC	4 cut(s)	462, 1434, 3414, 4587
XmnI	GAANNNNTTC	5 cut(s)	221, 849, 1193, 1821, 2775
ZrmI	AGTACT	2 cut(s)	2761, 4693
Zsp2I	ATGCAT	2 cut(s)	3024, 3856

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.