Rmu_ssc0000238.1_g000003

Programmed cell death protein 2-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_ssc0000238.1
OG0006140
Physical Location & Seq
Reverse (-)
9503 .. 12390
2888 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1113 bp
atgccgggaccatgggctgatgattttcgtgaatcatctgatcattatacaacgaaaattggtggactacctgattggccccttactgaggaatctgtgccaccgaatctgcttcaatgtagtgcttgtggaagtaaactatgtcttgtagcgcaggtttatgctccagtttcaagtgaaaacttaagagttgaagagcgtgttctttttgtttttggttgtctgatggcaaactgtgggagcactcctcttagctggcgagctcttcgtcttcaaaaattagacgatgcggagaaatcaaataccacttctcaggaagtggtgccagtgacttcaccatttgtatcagtttcaaacaaaagctggtgggaggatttggatgatgaagatgcagatatcgatttggaggagttgggtaaagcacttaatagtgctgcgagtttcgcttctcataccaagaaaccacatgtgaatgaacgtagtaagcctgttgcaaaaccattgccttcaagtcagttggaaaaagtggcagacgctaatacacctgtgctgccttgtttttatttatacactcaagaagaggcatcttcaaaggacaaccttacttctatgtgttcgaactactcatcgctttccatcaaaaataactcaaatgatgaggatgatgcacaaagtgaaacatgggcagaggaagcttatgaatatgataaagctttgactgcagacaggacataccttaagtttaagaaacgattggatgtgaacccagaacaatgtttcagatattcatatggtggaaatccactcctagctacacaagctgaaggcgaccctgggagatgtacattgtgtggtggatcaaggcattatgaaatgcagctaatgcctccactattatattttctacaaggagctgctgatgattgccaaagacagtcactggagaactggaactggatgacacttatggtatatacttgttcccagagctgttctcaacattttgatcaaggaaattcaaacattgggaagtggcttgtgacagaggaagctattcttgtacaactagagaaatcctttcccggggtagccgaacatagctattcatcataa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PDCD2_C

Protein Analysis

370

Amino Acids

41.31

Weight (kDa)

4.64

Isoelectric Point (pI)

50.41

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PDCD2_C PF04194 242 - 355 6.4e-29 Programmed cell death protein 2, C-terminal putative domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 145
AccB1I GGYRCC 1 cut(s) 322
AciI CCGC 1 cut(s) 290
AclWI GGATC 1 cut(s) 865
AcsI RAATTY 1 cut(s) 1015
AcuI CTGAAG 1 cut(s) 843
AdeI CACNNNGTG 1 cut(s) 674
AfaI GTAC 2 cut(s) 844, 1062
AfiI CCNNNNNNNGG 2 cut(s) 88, 1083
AflII CTTAAG 2 cut(s) 184, 737
AflIII ACRYGT 1 cut(s) 466
AgsI TTSAA 8 cut(s) 116, 174, 194, 275, 354, 510, 591, 1020
AjnI CCWGG 1 cut(s) 832
Alw21I GWGCWC 2 cut(s) 245, 265
AlwI GGATC 1 cut(s) 865
AlwNI CAGNNNCTG 1 cut(s) 940
Ama87I CYCGRG 1 cut(s) 1082
AoxI GGCC 1 cut(s) 77
ApeKI GCWGC 4 cut(s) 434, 550, 877, 914
ApoI RAATTY 1 cut(s) 1015
Asp700I GAANNNNTTC 1 cut(s) 1053
AspLEI GCGC 1 cut(s) 154
AspS9I GGNCC 2 cut(s) 8, 78
AsuC2I CCSGG 3 cut(s) 6, 1083, 1084
AsuHPI GGTGA 1 cut(s) 327
AsuII TTCGAA 1 cut(s) 617
AvaI CYCGRG 1 cut(s) 1082
AvaII GGWCC 1 cut(s) 8
BanI GGYRCC 1 cut(s) 322
BanII GRGCYC 1 cut(s) 265
BbsI GAAGAC 1 cut(s) 263
Bbv12I GWGCWC 2 cut(s) 245, 265
BbvI GCAGC 4 cut(s) 421, 537, 889, 901
BccI CCATC 2 cut(s) 220, 644
BciT130I CCWGG 1 cut(s) 834
BclI TGATCA 2 cut(s) 40, 1006
BcnI CCSGG 3 cut(s) 6, 1083, 1084
BfaI CTAG 2 cut(s) 809, 1067
BfmI CTRYAG 1 cut(s) 720
BfrI CTTAAG 2 cut(s) 184, 737
BfuAI ACCTGC 1 cut(s) 145
BisI GCNGC 4 cut(s) 435, 551, 878, 915
BlsI GCNGC 4 cut(s) 436, 552, 879, 916
Bme1390I CCNGG 4 cut(s) 6, 834, 1083, 1084
Bme18I GGWCC 1 cut(s) 8
BmeT110I CYCGRG 1 cut(s) 1082
BmgT120I GGNCC 2 cut(s) 8, 78
BmiI GGNNCC 3 cut(s) 9, 80, 324
BmrFI CCNGG 4 cut(s) 6, 834, 1083, 1084
BmsI GCATC 4 cut(s) 277, 379, 593, 655
BpiI GAAGAC 1 cut(s) 263
BplI GAGNNNNNCTC 4 cut(s) 232, 264, 979, 1011
BpmI CTGGAG 2 cut(s) 150, 962
Bpu14I TTCGAA 1 cut(s) 617
BpuEI CTTGAG 1 cut(s) 558
BpuMI CCSGG 3 cut(s) 6, 1083, 1084
Bsa29I ATCGAT 1 cut(s) 399
BsaJI CCNNGG 5 cut(s) 11, 832, 833, 1082, 1083
Bsc4I CCNNNNNNNGG 2 cut(s) 88, 1083
Bse1I ACTGG 5 cut(s) 167, 326, 945, 953, 959
Bse3DI GCAATG 1 cut(s) 500
BseBI CCWGG 1 cut(s) 834
BseCI ATCGAT 1 cut(s) 399
BseDI CCNNGG 5 cut(s) 11, 832, 833, 1082, 1083
BseGI GGATG 4 cut(s) 385, 667, 763, 963
BseLI CCNNNNNNNGG 2 cut(s) 88, 1083
BseMI GCAATG 1 cut(s) 500
BseMII CTCAG 2 cut(s) 78, 326
BseNI ACTGG 5 cut(s) 167, 326, 945, 953, 959
BseRI GAGGAG 2 cut(s) 237, 422
BseXI GCAGC 4 cut(s) 421, 537, 889, 901
BshFI GGCC 1 cut(s) 79
BshNI GGYRCC 1 cut(s) 322
BshVI ATCGAT 1 cut(s) 399
BsiHKAI GWGCWC 2 cut(s) 245, 265
BsiHKCI CYCGRG 1 cut(s) 1082
BsiSI CCGG 2 cut(s) 5, 1083
BslFI GGGAC 1 cut(s) 21
BslI CCNNNNNNNGG 2 cut(s) 88, 1083
BsmFI GGGAC 1 cut(s) 21
BsnI GGCC 1 cut(s) 79
BsoBI CYCGRG 1 cut(s) 1082
Bsp119I TTCGAA 1 cut(s) 617
Bsp1286I GDGCHC 2 cut(s) 245, 265
Bsp1407I TGTACA 2 cut(s) 842, 1060
Bsp143I GATC 3 cut(s) 40, 857, 1006
Bsp19I CCATGG 1 cut(s) 11
BspACI CCGC 1 cut(s) 290
BspANI GGCC 1 cut(s) 79
BspCNI CTCAG 2 cut(s) 79, 325
BspDI ATCGAT 1 cut(s) 399
BspLI GGNNCC 3 cut(s) 9, 80, 324
BspMAI CTGCAG 1 cut(s) 724
BspMI ACCTGC 1 cut(s) 145
BspPI GGATC 1 cut(s) 865
BspQI GCTCTTC 2 cut(s) 189, 270
BspT104I TTCGAA 1 cut(s) 617
BspT107I GGYRCC 1 cut(s) 322
BspTI CTTAAG 2 cut(s) 184, 737
BsrDI GCAATG 1 cut(s) 500
BsrGI TGTACA 2 cut(s) 842, 1060
BsrI ACTGG 5 cut(s) 167, 326, 945, 953, 959
BssECI CCNNGG 5 cut(s) 11, 832, 833, 1082, 1083
BssMI GATC 3 cut(s) 40, 857, 1006
BssT1I CCWWGG 1 cut(s) 11
Bst2UI CCWGG 1 cut(s) 834
Bst4CI ACNGT 2 cut(s) 236, 936
Bst6I CTCTTC 3 cut(s) 189, 270, 573
BstAFI CTTAAG 2 cut(s) 184, 737
BstAPI GCANNNNNTGC 1 cut(s) 883
BstAUI TGTACA 2 cut(s) 842, 1060
BstBI TTCGAA 1 cut(s) 617
BstC8I GCNNGC 2 cut(s) 257, 261
BstDEI CTNAG 3 cut(s) 87, 251, 312
BstDSI CCRYGG 1 cut(s) 11
BstENI CCTNNNNNAGG 1 cut(s) 86
BstF5I GGATG 4 cut(s) 385, 667, 763, 963
BstHHI GCGC 1 cut(s) 154
BstKTI GATC 3 cut(s) 43, 860, 1009
BstMBI GATC 3 cut(s) 40, 857, 1006
BstMWI GCNNNNNNNGC 5 cut(s) 443, 692, 719, 818, 883
BstNI CCWGG 1 cut(s) 834
BstNSI RCATGY 1 cut(s) 470
BstSCI CCNGG 4 cut(s) 4, 832, 1081, 1082
BstSFI CTRYAG 1 cut(s) 720
BstV1I GCAGC 4 cut(s) 421, 537, 889, 901
BstV2I GAAGAC 1 cut(s) 263
Bsu15I ATCGAT 1 cut(s) 399
BsuRI GGCC 1 cut(s) 79
BsuTUI ATCGAT 1 cut(s) 399
BtgI CCRYGG 1 cut(s) 11
BtgZI GCGATG 1 cut(s) 612
BtsCI GGATG 4 cut(s) 385, 667, 763, 963
BtsIMutI CAGTG 2 cut(s) 333, 938
BveI ACCTGC 1 cut(s) 145
Cac8I GCNNGC 2 cut(s) 257, 261
CaiI CAGNNNCTG 1 cut(s) 940
CfoI GCGC 1 cut(s) 154
Cfr13I GGNCC 2 cut(s) 8, 78
Cfr9I CCCGGG 1 cut(s) 1082
ClaI ATCGAT 1 cut(s) 399
CseI GACGC 1 cut(s) 542
Csp6I GTAC 2 cut(s) 843, 1061
CviAII CATG 3 cut(s) 12, 467, 681
CviQI GTAC 2 cut(s) 843, 1061
DdeI CTNAG 3 cut(s) 87, 251, 312
DpnI GATC 3 cut(s) 42, 859, 1008
DpnII GATC 3 cut(s) 40, 857, 1006
DraIII CACNNNGTG 1 cut(s) 674
Eam1104I CTCTTC 3 cut(s) 189, 270, 573
EarI CTCTTC 3 cut(s) 189, 270, 573
Ecl136II GAGCTC 1 cut(s) 263
Eco130I CCWWGG 1 cut(s) 11
Eco24I GRGCYC 1 cut(s) 265
Eco32I GATATC 1 cut(s) 397
Eco47I GGWCC 1 cut(s) 8
Eco53kI GAGCTC 1 cut(s) 263
Eco57I CTGAAG 1 cut(s) 843
Eco88I CYCGRG 1 cut(s) 1082
EcoICRI GAGCTC 1 cut(s) 263
EcoNI CCTNNNNNAGG 1 cut(s) 86
EcoRII CCWGG 1 cut(s) 832
EcoRV GATATC 1 cut(s) 397
EcoT14I CCWWGG 1 cut(s) 11
EcoT38I GRGCYC 1 cut(s) 265
ErhI CCWWGG 1 cut(s) 11
FaeI CATG 3 cut(s) 15, 470, 684
FalI AAGNNNNNCTT 2 cut(s) 1041, 1073
FaqI GGGAC 1 cut(s) 21
FatI CATG 3 cut(s) 11, 466, 680
FauNDI CATATG 1 cut(s) 790
FbaI TGATCA 2 cut(s) 40, 1006
Fnu4HI GCNGC 4 cut(s) 435, 551, 878, 915
FokI GGATG 4 cut(s) 392, 674, 770, 970
FriOI GRGCYC 1 cut(s) 265
Fsp4HI GCNGC 4 cut(s) 435, 551, 878, 915
FspBI CTAG 2 cut(s) 809, 1067
GlaI GCGC 1 cut(s) 153
GluI GCNGC 4 cut(s) 435, 551, 878, 915
GsuI CTGGAG 2 cut(s) 150, 962
HaeIII GGCC 1 cut(s) 79
HapII CCGG 2 cut(s) 5, 1083
HgaI GACGC 1 cut(s) 542
HhaI GCGC 1 cut(s) 154
Hin1II CATG 3 cut(s) 15, 470, 684
Hin6I GCGC 1 cut(s) 152
HinP1I GCGC 1 cut(s) 152
HindIII AAGCTT 2 cut(s) 693, 711
HinfI GANTC 3 cut(s) 32, 92, 106
HpaII CCGG 2 cut(s) 5, 1083
HphI GGTGA 1 cut(s) 327
Hpy166II GTNNAC 3 cut(s) 65, 137, 763
Hpy188I TCNGA 3 cut(s) 40, 225, 782
Hpy188III TCNNGA 3 cut(s) 29, 314, 575
Hpy8I GTNNAC 3 cut(s) 65, 137, 763
HpyAV CCTTC 2 cut(s) 516, 818
HpyCH4III ACNGT 2 cut(s) 236, 936
HpyCH4IV ACGT 1 cut(s) 478
HpyCH4V TGCA 5 cut(s) 392, 494, 668, 722, 877
HpyF10VI GCNNNNNNNGC 5 cut(s) 443, 692, 719, 818, 883
HpyF3I CTNAG 3 cut(s) 87, 251, 312
HpySE526I ACGT 1 cut(s) 478
Hsp92II CATG 3 cut(s) 15, 470, 684
HspAI GCGC 1 cut(s) 152
Ksp22I TGATCA 2 cut(s) 40, 1006
Kzo9I GATC 3 cut(s) 40, 857, 1006
LguI GCTCTTC 2 cut(s) 189, 270
LmnI GCTCC 3 cut(s) 169, 240, 911
Lsp1109I GCAGC 4 cut(s) 421, 537, 889, 901
LweI GCATC 4 cut(s) 277, 379, 593, 655
MaeI CTAG 2 cut(s) 809, 1067
MaeII ACGT 1 cut(s) 478
MaeIII GTNAC 3 cut(s) 328, 936, 1039
MalI GATC 3 cut(s) 42, 859, 1008
MboI GATC 3 cut(s) 40, 857, 1006
MboII GAAGA 6 cut(s) 206, 257, 263, 398, 579, 590
MhlI GDGCHC 2 cut(s) 245, 265
MluCI AATT 3 cut(s) 57, 278, 1015
MmeI TCCRAC 1 cut(s) 498
MnlI CCTC 9 cut(s) 82, 258, 364, 400, 574, 652, 682, 897, 1039
MroXI GAANNNNTTC 1 cut(s) 1053
MseI TTAA 4 cut(s) 185, 426, 738, 744
MslI CAYNNNNRTG 1 cut(s) 471
MspCI CTTAAG 2 cut(s) 184, 737
MspI CCGG 2 cut(s) 5, 1083
MspR9I CCNGG 4 cut(s) 6, 834, 1083, 1084
MvaI CCWGG 1 cut(s) 834
MwoI GCNNNNNNNGC 5 cut(s) 443, 692, 719, 818, 883
NciI CCSGG 3 cut(s) 6, 1083, 1084
NcoI CCATGG 1 cut(s) 11
NdeI CATATG 1 cut(s) 790
NdeII GATC 3 cut(s) 40, 857, 1006
NlaIII CATG 3 cut(s) 15, 470, 684
NlaIV GGNNCC 3 cut(s) 9, 80, 324
NmuCI GTSAC 3 cut(s) 328, 936, 1039
NspI RCATGY 1 cut(s) 470
NspV TTCGAA 1 cut(s) 617
PasI CCCWGGG 1 cut(s) 833
PciI ACATGT 1 cut(s) 466
PciSI GCTCTTC 2 cut(s) 189, 270
PdmI GAANNNNTTC 1 cut(s) 1053
PfeI GAWTC 3 cut(s) 32, 92, 106
PkrI GCNGC 4 cut(s) 436, 552, 879, 916
PscI ACATGT 1 cut(s) 466
Psp124BI GAGCTC 1 cut(s) 265
Psp6I CCWGG 1 cut(s) 832
PspGI CCWGG 1 cut(s) 832
PspN4I GGNNCC 3 cut(s) 9, 80, 324
PspPI GGNCC 2 cut(s) 8, 78
PstI CTGCAG 1 cut(s) 724
PstNI CAGNNNCTG 1 cut(s) 940
RsaI GTAC 2 cut(s) 844, 1062
RsaNI GTAC 2 cut(s) 843, 1061
RseI CAYNNNNRTG 1 cut(s) 471
SacI GAGCTC 1 cut(s) 265
SapI GCTCTTC 2 cut(s) 189, 270
SaqAI TTAA 4 cut(s) 185, 426, 738, 744
SatI GCNGC 4 cut(s) 435, 551, 878, 915
Sau3AI GATC 3 cut(s) 40, 857, 1006
Sau96I GGNCC 2 cut(s) 8, 78
ScrFI CCNGG 4 cut(s) 6, 834, 1083, 1084
SduI GDGCHC 2 cut(s) 245, 265
SfaNI GCATC 4 cut(s) 277, 379, 593, 655
SfcI CTRYAG 1 cut(s) 720
SfuI TTCGAA 1 cut(s) 617
SinI GGWCC 1 cut(s) 8
SmaI CCCGGG 1 cut(s) 1084
SmiMI CAYNNNNRTG 1 cut(s) 471
SmlI CTYRAG 3 cut(s) 184, 573, 737
SmoI CTYRAG 3 cut(s) 184, 573, 737
Sse9I AATT 3 cut(s) 57, 278, 1015
SsiI CCGC 1 cut(s) 290
SspMI CTAG 2 cut(s) 809, 1067
SstI GAGCTC 1 cut(s) 265
StyD4I CCNGG 4 cut(s) 4, 832, 1081, 1082
StyI CCWWGG 1 cut(s) 11
TaaI ACNGT 2 cut(s) 236, 936
TaiI ACGT 1 cut(s) 481
TaqI TCGA 2 cut(s) 399, 617
TasI AATT 3 cut(s) 57, 278, 1015
TatI WGTACW 2 cut(s) 842, 1060
TfiI GAWTC 3 cut(s) 32, 92, 106
Tru1I TTAA 4 cut(s) 185, 426, 738, 744
Tru9I TTAA 4 cut(s) 185, 426, 738, 744
TscAI CASTG 2 cut(s) 333, 945
TseFI GTSAC 3 cut(s) 328, 936, 1039
TseI GCWGC 4 cut(s) 434, 550, 877, 914
Tsp45I GTSAC 3 cut(s) 328, 936, 1039
TspDTI ATGAA 6 cut(s) 399, 489, 714, 777, 885, 1095
TspMI CCCGGG 1 cut(s) 1082
TspRI CASTG 2 cut(s) 333, 945
Vha464I CTTAAG 2 cut(s) 184, 737
VpaK11BI GGWCC 1 cut(s) 8
XagI CCTNNNNNAGG 1 cut(s) 86
XapI RAATTY 1 cut(s) 1015
XceI RCATGY 1 cut(s) 470
XmaI CCCGGG 1 cut(s) 1082
XmnI GAANNNNTTC 1 cut(s) 1053
XspI CTAG 2 cut(s) 809, 1067
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.