Rmu_ssc0000308.1_g000036

ABC transporter F family member

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_ssc0000308.1
OG0002371
Physical Location & Seq
Forward (+)
150204 .. 152456
2253 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1008 bp
atgggaaaaaagaagacagatgaagctggtgccgccatgaagggtaagtcaaccggaaaagatgcttctaaagatggaaagaaagtgaaagcaccaacagtctccgccatgttggccaacatggaccagaaacctgagaagcccaagaaggcatcttcctctagtgcaaaggcaaaagtcgctccaaaactttcatcctacactgatggtattgatctccctccctctgatgatgaggtggaagaggaacaacaatccaatcagcaaaggaggtcagaggctaagacgattgatatatccattacagagaaagagttaaaaaaacgtgaaaagaaggaccttcttgctgcccatgctgctgagctgtcaaagaaggaggccctgagagatgatcatgatgctttcactgttgttattggaagcagggcttcagtacttgagggtgaagatgcagatgctaatatcaaggacatatcaatagatagtttttctgtggcggctcgaggaaaggaactactaaagaatacatcagtgaagatatctcatgggaagagatatggtctggttggtccaaatgggatggggaagtctaccctcctgaagcttcttgcttggaggaagattccagtaccaaaaaacatcgatgttcttttagttgaacaggaggtagttggtgatgatagaagtgctctggaagcagttgtttcagctaatgaagaacttgtcaagctccgggaagaggttgcagcattgcagaattcagattctgctcccggtggtgaggaagaggatagtcatgatgatgatgcaggagagaagcttgctgagttgtacgatcaattgcagctgatgggatcggatgctgctgaagcccaggcttcaaagattcttgccggtttgggatttacaaaggatatgcaaggccgccccactaagtcattcagtggtggtagaggcaccagtggtgccacactgatggtgaaaattctcgactttggtgatgaatga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0005215
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
ABC_tran

Protein Analysis

335

Amino Acids

35.81

Weight (kDa)

5.45

Isoelectric Point (pI)

34.62

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ABC_tran PF00005 173 - 318 6.6e-13 ABC transporter
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 3 cut(s) 29, 956, 965
AccI GTMKAC 1 cut(s) 590
AciI CCGC 4 cut(s) 33, 105, 497, 925
AclWI GGATC 1 cut(s) 862
AcoI YGGCCR 1 cut(s) 114
AcsI RAATTY 2 cut(s) 757, 984
AcuI CTGAAG 3 cut(s) 414, 620, 888
AfaI GTAC 3 cut(s) 435, 630, 833
AfiI CCNNNNNNNGG 1 cut(s) 739
AgsI TTSAA 2 cut(s) 659, 882
AjnI CCWGG 1 cut(s) 873
AluBI AGCT 7 cut(s) 26, 364, 604, 710, 730, 820, 847
AluI AGCT 7 cut(s) 26, 364, 604, 710, 730, 820, 847
Alw21I GWGCWC 1 cut(s) 691
Alw26I GTCTC 1 cut(s) 106
AlwI GGATC 1 cut(s) 862
AlwNI CAGNNNCTG 1 cut(s) 767
Ama87I CYCGRG 1 cut(s) 501
AoxI GGCC 3 cut(s) 114, 378, 922
ApeKI GCWGC 5 cut(s) 347, 356, 746, 844, 863
ApoI RAATTY 2 cut(s) 757, 984
AspS9I GGNCC 4 cut(s) 124, 337, 379, 569
AsuC2I CCSGG 2 cut(s) 734, 774
AsuHPI GGTGA 4 cut(s) 455, 686, 791, 991
AvaI CYCGRG 1 cut(s) 501
AvaII GGWCC 3 cut(s) 124, 337, 569
BalI TGGCCA 1 cut(s) 116
BanI GGYRCC 3 cut(s) 29, 956, 965
BbsI GAAGAC 1 cut(s) 20
Bbv12I GWGCWC 1 cut(s) 691
BbvI GCAGC 5 cut(s) 334, 343, 758, 850, 856
BccI CCATC 5 cut(s) 68, 200, 574, 844, 970
BciT130I CCWGG 1 cut(s) 875
BclI TGATCA 1 cut(s) 391
BcnI CCSGG 2 cut(s) 734, 774
BcoDI GTCTC 1 cut(s) 106
BfaI CTAG 1 cut(s) 162
BglI GCCNNNNNGGC 1 cut(s) 113
BisI GCNGC 8 cut(s) 33, 348, 357, 498, 747, 845, 864, 925
BlpI GCTNAGC 1 cut(s) 360
BlsI GCNGC 8 cut(s) 34, 349, 358, 499, 748, 846, 865, 926
BmcAI AGTACT 1 cut(s) 435
Bme1390I CCNGG 3 cut(s) 734, 774, 875
Bme18I GGWCC 3 cut(s) 124, 337, 569
BmeT110I CYCGRG 1 cut(s) 501
BmgT120I GGNCC 4 cut(s) 124, 337, 379, 569
BmiI GGNNCC 3 cut(s) 31, 958, 967
BmrFI CCNGG 3 cut(s) 734, 774, 875
BmsI GCATC 7 cut(s) 52, 161, 388, 439, 445, 796, 850
BpiI GAAGAC 1 cut(s) 20
Bpu1102I GCTNAGC 1 cut(s) 360
BpuEI CTTGAG 1 cut(s) 458
BpuMI CCSGG 2 cut(s) 734, 774
Bsa29I ATCGAT 1 cut(s) 642
BsaJI CCNNGG 1 cut(s) 873
BsaWI WCCGGW 1 cut(s) 53
Bsc4I CCNNNNNNNGG 1 cut(s) 739
Bse118I RCCGGY 1 cut(s) 893
Bse1I ACTGG 2 cut(s) 626, 960
Bse3DI GCAATG 1 cut(s) 749
BseBI CCWGG 1 cut(s) 875
BseCI ATCGAT 1 cut(s) 642
BseDI CCNNGG 1 cut(s) 873
BseGI GGATG 3 cut(s) 194, 585, 865
BseLI CCNNNNNNNGG 1 cut(s) 739
BseMI GCAATG 1 cut(s) 749
BseMII CTCAG 4 cut(s) 126, 351, 374, 816
BseNI ACTGG 2 cut(s) 626, 960
BseXI GCAGC 5 cut(s) 334, 343, 758, 850, 856
BshFI GGCC 3 cut(s) 116, 380, 924
BshNI GGYRCC 3 cut(s) 29, 956, 965
BshVI ATCGAT 1 cut(s) 642
BsiHKAI GWGCWC 1 cut(s) 691
BsiHKCI CYCGRG 1 cut(s) 501
BsiSI CCGG 4 cut(s) 54, 733, 774, 894
BslI CCNNNNNNNGG 1 cut(s) 739
BsmAI GTCTC 1 cut(s) 106
BsnI GGCC 3 cut(s) 116, 380, 924
BsoBI CYCGRG 1 cut(s) 501
Bsp1286I GDGCHC 1 cut(s) 691
Bsp143I GATC 4 cut(s) 214, 391, 835, 854
Bsp1720I GCTNAGC 1 cut(s) 360
BspACI CCGC 4 cut(s) 33, 105, 497, 925
BspANI GGCC 3 cut(s) 116, 380, 924
BspCNI CTCAG 4 cut(s) 127, 352, 375, 817
BspDI ATCGAT 1 cut(s) 642
BspHI TCATGA 2 cut(s) 394, 796
BspLI GGNNCC 3 cut(s) 31, 958, 967
BspPI GGATC 1 cut(s) 862
BspT107I GGYRCC 3 cut(s) 29, 956, 965
BsrDI GCAATG 1 cut(s) 749
BsrFI RCCGGY 1 cut(s) 893
BsrI ACTGG 2 cut(s) 626, 960
BssAI RCCGGY 1 cut(s) 893
BssECI CCNNGG 1 cut(s) 873
BssMI GATC 4 cut(s) 214, 391, 835, 854
Bst2UI CCWGG 1 cut(s) 875
Bst4CI ACNGT 2 cut(s) 100, 409
Bst6I CTCTTC 4 cut(s) 237, 545, 732, 780
BstC8I GCNNGC 1 cut(s) 822
BstDEI CTNAG 6 cut(s) 135, 282, 360, 383, 825, 933
BstF5I GGATG 3 cut(s) 194, 585, 865
BstKTI GATC 4 cut(s) 217, 394, 838, 857
BstMAI GTCTC 1 cut(s) 106
BstMBI GATC 4 cut(s) 214, 391, 835, 854
BstMWI GCNNNNNNNGC 7 cut(s) 32, 113, 179, 353, 356, 695, 869
BstNI CCWGG 1 cut(s) 875
BstSCI CCNGG 3 cut(s) 732, 772, 873
BstV1I GCAGC 5 cut(s) 334, 343, 758, 850, 856
BstV2I GAAGAC 1 cut(s) 20
BstXI CCANNNNNNTGG 1 cut(s) 976
Bsu15I ATCGAT 1 cut(s) 642
BsuRI GGCC 3 cut(s) 116, 380, 924
BsuTUI ATCGAT 1 cut(s) 642
BtsCI GGATG 3 cut(s) 194, 585, 865
BtsIMutI CAGTG 6 cut(s) 201, 405, 537, 949, 967, 971
Cac8I GCNNGC 1 cut(s) 822
CaiI CAGNNNCTG 1 cut(s) 767
CciI TCATGA 2 cut(s) 394, 796
Cfr10I RCCGGY 1 cut(s) 893
Cfr13I GGNCC 4 cut(s) 124, 337, 379, 569
ClaI ATCGAT 1 cut(s) 642
Csp6I GTAC 3 cut(s) 434, 629, 832
CviAII CATG 7 cut(s) 37, 109, 121, 353, 395, 545, 797
CviQI GTAC 3 cut(s) 434, 629, 832
DdeI CTNAG 6 cut(s) 135, 282, 360, 383, 825, 933
DpnI GATC 4 cut(s) 216, 393, 837, 856
DpnII GATC 4 cut(s) 214, 391, 835, 854
EaeI YGGCCR 1 cut(s) 114
Eam1104I CTCTTC 4 cut(s) 237, 545, 732, 780
EarI CTCTTC 4 cut(s) 237, 545, 732, 780
EciI GGCGGA 1 cut(s) 94
Eco32I GATATC 1 cut(s) 540
Eco47I GGWCC 3 cut(s) 124, 337, 569
Eco57I CTGAAG 3 cut(s) 414, 620, 888
Eco88I CYCGRG 1 cut(s) 501
EcoO109I RGGNCCY 2 cut(s) 337, 379
EcoRI GAATTC 1 cut(s) 757
EcoRII CCWGG 1 cut(s) 873
EcoRV GATATC 1 cut(s) 540
FaeI CATG 7 cut(s) 40, 112, 124, 356, 398, 548, 800
FalI AAGNNNNNCTT 2 cut(s) 412, 444
FatI CATG 7 cut(s) 36, 108, 120, 352, 394, 544, 796
FbaI TGATCA 1 cut(s) 391
FblI GTMKAC 1 cut(s) 590
Fnu4HI GCNGC 8 cut(s) 33, 348, 357, 498, 747, 845, 864, 925
FokI GGATG 3 cut(s) 181, 592, 872
Fsp4HI GCNGC 8 cut(s) 33, 348, 357, 498, 747, 845, 864, 925
FspBI CTAG 1 cut(s) 162
GluI GCNGC 8 cut(s) 33, 348, 357, 498, 747, 845, 864, 925
HaeIII GGCC 3 cut(s) 116, 380, 924
HapII CCGG 4 cut(s) 54, 733, 774, 894
Hin1II CATG 7 cut(s) 40, 112, 124, 356, 398, 548, 800
HincII GTYRAC 1 cut(s) 51
HindII GTYRAC 1 cut(s) 51
HindIII AAGCTT 2 cut(s) 602, 818
HinfI GANTC 3 cut(s) 622, 764, 886
HpaII CCGG 4 cut(s) 54, 733, 774, 894
HphI GGTGA 4 cut(s) 455, 686, 791, 991
Hpy166II GTNNAC 2 cut(s) 51, 591
Hpy188I TCNGA 4 cut(s) 229, 277, 763, 859
Hpy188III TCNNGA 5 cut(s) 395, 598, 692, 797, 989
Hpy8I GTNNAC 2 cut(s) 51, 591
HpyAV CCTTC 5 cut(s) 34, 142, 328, 350, 367
HpyCH4III ACNGT 2 cut(s) 100, 409
HpyCH4IV ACGT 1 cut(s) 325
HpyCH4V TGCA 7 cut(s) 167, 452, 746, 754, 809, 844, 919
HpyF10VI GCNNNNNNNGC 7 cut(s) 32, 113, 179, 353, 356, 695, 869
HpyF3I CTNAG 6 cut(s) 135, 282, 360, 383, 825, 933
HpySE526I ACGT 1 cut(s) 325
Hsp92II CATG 7 cut(s) 40, 112, 124, 356, 398, 548, 800
Ksp22I TGATCA 1 cut(s) 391
Kzo9I GATC 4 cut(s) 214, 391, 835, 854
LmnI GCTCC 3 cut(s) 187, 735, 775
Lsp1109I GCAGC 5 cut(s) 334, 343, 758, 850, 856
LweI GCATC 7 cut(s) 52, 161, 388, 439, 445, 796, 850
MaeI CTAG 1 cut(s) 162
MaeII ACGT 1 cut(s) 325
MalI GATC 4 cut(s) 216, 393, 837, 856
MboI GATC 4 cut(s) 214, 391, 835, 854
MfeI CAATTG 1 cut(s) 839
MhlI GDGCHC 1 cut(s) 691
MlsI TGGCCA 1 cut(s) 116
MluCI AATT 3 cut(s) 757, 839, 984
MluNI TGGCCA 1 cut(s) 116
Mox20I TGGCCA 1 cut(s) 116
MscI TGGCCA 1 cut(s) 116
MseI TTAA 1 cut(s) 317
MslI CAYNNNNRTG 2 cut(s) 801, 974
Msp20I TGGCCA 1 cut(s) 116
MspA1I CMGCKG 1 cut(s) 847
MspI CCGG 4 cut(s) 54, 733, 774, 894
MspR9I CCNGG 3 cut(s) 734, 774, 875
MunI CAATTG 1 cut(s) 839
MvaI CCWGG 1 cut(s) 875
MwoI GCNNNNNNNGC 7 cut(s) 32, 113, 179, 353, 356, 695, 869
NciI CCSGG 2 cut(s) 734, 774
NdeII GATC 4 cut(s) 214, 391, 835, 854
NlaIII CATG 7 cut(s) 40, 112, 124, 356, 398, 548, 800
NlaIV GGNNCC 3 cut(s) 31, 958, 967
PaeR7I CTCGAG 1 cut(s) 501
PagI TCATGA 2 cut(s) 394, 796
PfeI GAWTC 3 cut(s) 622, 764, 886
PfoI TCCNGGA 1 cut(s) 732
PkrI GCNGC 8 cut(s) 34, 349, 358, 499, 748, 846, 865, 926
PpuMI RGGWCCY 1 cut(s) 337
Psp5II RGGWCCY 1 cut(s) 337
Psp6I CCWGG 1 cut(s) 873
PspGI CCWGG 1 cut(s) 873
PspN4I GGNNCC 3 cut(s) 31, 958, 967
PspPI GGNCC 4 cut(s) 124, 337, 379, 569
PspPPI RGGWCCY 1 cut(s) 337
PspXI VCTCGAGB 1 cut(s) 501
PstNI CAGNNNCTG 1 cut(s) 767
PvuII CAGCTG 1 cut(s) 847
RsaI GTAC 3 cut(s) 435, 630, 833
RsaNI GTAC 3 cut(s) 434, 629, 832
RseI CAYNNNNRTG 2 cut(s) 801, 974
SaqAI TTAA 1 cut(s) 317
SatI GCNGC 8 cut(s) 33, 348, 357, 498, 747, 845, 864, 925
Sau3AI GATC 4 cut(s) 214, 391, 835, 854
Sau96I GGNCC 4 cut(s) 124, 337, 379, 569
ScaI AGTACT 1 cut(s) 435
ScrFI CCNGG 3 cut(s) 734, 774, 875
SduI GDGCHC 1 cut(s) 691
SfaNI GCATC 7 cut(s) 52, 161, 388, 439, 445, 796, 850
Sfr274I CTCGAG 1 cut(s) 501
SinI GGWCC 3 cut(s) 124, 337, 569
SlaI CTCGAG 1 cut(s) 501
SmiMI CAYNNNNRTG 2 cut(s) 801, 974
SmlI CTYRAG 2 cut(s) 437, 501
SmoI CTYRAG 2 cut(s) 437, 501
Sse9I AATT 3 cut(s) 757, 839, 984
SsiI CCGC 4 cut(s) 33, 105, 497, 925
SspMI CTAG 1 cut(s) 162
StyD4I CCNGG 3 cut(s) 732, 772, 873
TaaI ACNGT 2 cut(s) 100, 409
TaiI ACGT 1 cut(s) 328
TaqI TCGA 3 cut(s) 502, 642, 990
TasI AATT 3 cut(s) 757, 839, 984
TatI WGTACW 1 cut(s) 433
TauI GCSGC 3 cut(s) 35, 500, 927
TfiI GAWTC 3 cut(s) 622, 764, 886
Tru1I TTAA 1 cut(s) 317
Tru9I TTAA 1 cut(s) 317
TscAI CASTG 6 cut(s) 208, 412, 537, 949, 967, 978
TseI GCWGC 5 cut(s) 347, 356, 746, 844, 863
TspDTI ATGAA 4 cut(s) 36, 53, 183, 729
TspRI CASTG 6 cut(s) 208, 412, 537, 949, 967, 978
VpaK11BI GGWCC 3 cut(s) 124, 337, 569
XapI RAATTY 2 cut(s) 757, 984
XhoI CTCGAG 1 cut(s) 501
XmiI GTMKAC 1 cut(s) 590
XspI CTAG 1 cut(s) 162
ZrmI AGTACT 1 cut(s) 435
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.