Rmu_ssc0000330.1_g000014

Belongs to the group II decarboxylase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_ssc0000330.1
OG0014350
Physical Location & Seq
Forward (+)
54771 .. 64883
10113 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 3771 bp
atgttgtgttgcagcggcagcttccgaattcctcctcagcttaccaaaaacaaagccctcctcattttcccttctcgccctgctgcactcactctcacccaacccaataacaaacacaaacacaaagcctttcagattcactcactaatggaagtgaacacttcacactcaaactcagggctggggctggggctggacttcctctcaaagaagccatactcacctccttcttgggcatcccacatcagccccatcccctctcacaccttctctctcggtcaccttcccactccaatccacaaatggaatcttcctaatttgcccaacaacaccgaggtctggttgaagcgcgatgatctctcggggatgcagctcagcggcaacaaagtccggaaattggaattcctgatggcagatgccgtccaaaagggtgctgattgtatcattaccatagggggcatccaaagcaaccactgtcgtgcaactgctgtggctgcaaactatctcaatctcgactcttatctcattttacgtacctctaaggttcttgtggatcaagatcccggacttaccggaaaccttttggttgagcgtttagttggagctcatattgaattgatttcaaaagaagagtatgcaagaattgggagtgtggctcttactaataccttaaaggaaagactgataaaagaaggaagaaggccatatgtcattcctgttggtggatcagactccctcggaacttggggatatattcaagcaattcgagagattgagcagcagcttcacagtggggctggcaaagtaaagtttgatgatattgttgtagcatgtggaagtgggggtacaattgctggtttgtcattggggtctcggctgagttcattgaaggcaaaagttcatgcattctctgtctgcgatgaccctgattacttctacgactttgttcaaggcctacttgatggacttaaagcaggcgttgattcacgtaatattgttaacattcaaaatgccaagggtttaggctatgcaattaacaccgctgaggagcttacttttgtgaaggagattgccgctaccactgggaatcgctgtgtgaatatgatcgccaaccttttcaatgctcccatcggagcagctgaaactgctgttggcgtggggacggtaggatcttcagaggcaattatgctggctggcctagcttttaaaagaaaatggcagcacaggaggaaattagaaggcaaaccctacgacaagcccaacattgtcaccggagctaatgtgcaggtttgctgggaaaagtttgctaggtattttgaggttgaactgaaggaggtaaagctatcagagggatactatgtgatggaccctgtcaaagcagttgagatggttgatgagaacactatctgtgttgcagctattctaggttcaaccctgacgggagagtttgaggatgtgaagctcctgaatgatcttcttattaagaagaataaggagacaggatgggaaactcccattcatgttgatgctgccagtggaggctttatagcgccgttcctttatcctgaacttgagtgggacttccgtttgccattagtcaagagtatcaatgtaagtggccacaagtatggccttgtatatgctggtgttggatgggttgtgtggaggagtaaagaggacttgcccgacgagcttgtgtttcacatcaattatcttggatctgatcaaccaactttcaccctcaacttttccaaagggtctagccaaataattgctcagtattatcagtttatacgactgggatttgagggttacaaaaatgtaatggaaaactgcatggacaatacaagagcactgaaagaaggactagagaaaacagggcggtttgaaattctgtccaaagacataggagtgcccctggtggctttcaaactaaaagacagcagcaagcacactgtgtttgagatagctgatagtttgagaaagtttggatggatagttccagcctacactatgccagccaatgcagaacatattgctgttcttcgtgtggttgttagggaggattttagccggagcttggcggagagactcctctcagacatcgacaaggttttgaacgaaattgacacactgccaagccgtgtgtctatgaaagctgcaaatgtcacagctactgtcgatgaagtagtcaatgccagtgaagggatggtaaagcctggtaagaaaagtgtagaggaaattcaaagagaggtagcaacatattggaggaaccttgtggaaagaaagagaacagtgggtcaaagtcttgaatgtgttgggagtggtaatgctttagaaggtgatgtcgataagcttttcgagattattatggataatgcccagccacattgtgatatggagaaagctctcaacctagctggtgtaccattgactactgatttggttgttcaggtgcttcataggtttcgtttcgaggagaaactagcttttaggtttttcatgtgggcgggccaaaaggaaaactatgatcatgaagctcaggcgtataatgagatgattgatatattgtcgagtaccaagtacaaggtgaagcagttccgaattgtttgtgatttgctggattatatgaagaggcataacaagagtaaggttcctgttgaggttctcataacaattttgaagcagtacacggagaagcatctgacctatctgcagaaatttgccaagaagaagaagataagggtgaagacgcagccggagatcaatgccttgaactttctattggatgccctgtgcaagtgcagtcttgtacaggatgccgaactgatgttaaagagggtgaagaaaaatatcaagcctgatgcgaatacatacaacattttgtttttcggttggtgtagggttaggaatccgagtagaggaatgaggttactggaagagatgattgaagtgggtcacacgcctgataatttcacttacactactgccattgatgccttttgcaaagcagggatggttaccgaggcagctgaactttttgagttcatgagaacaaaaggttgtacaatttcttctcctactgcaaaaacttatgcaatcatgattgtggcgcttgtggagaatgacagaatggaggagtgcttcaaacttctgggacatatgataagtagtggctgccttcctgatgtttctacatacaaggaactactcgaagggatgtgtttggctggaaaggtcgaggaggcctacaagttcttgcaggagatgggaaacaaaggttaccctcccgatatagttacttataattgttttctaaaggtgctatgtgagaataaaaagggtgatgaagcactgaagctttacgggagaatgatagatataggttgtatgcctagtgtgcagacttataatatgttgatttcaatgtactttgagatgggtgatcctgatggggcatttgagacttggcatgagatggataagaggggctgtgcacaggacactgatactcattgcatgatgattgaagggcttttcggttgcaataaagtggaagatgcgtgttgtctcttggaggatgtggtgaacaagggaatgaaattgccatataccaagtttgactcctttctaatgcagctttctgtgattggtgatcttcaagccatccacagactttcggagcatatgagaaggttctataatccttctatggcaagacgctttgcattgaaccagaagcggaggagcatttgtatgagggagcactaa

Protein Analysis

1256

Amino Acids

140.94

Weight (kDa)

7.8

Isoelectric Point (pI)

38.14

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PALP PF00291 91 - 362 7.3e-27 Pyridoxal-phosphate dependent enzyme
Pyridoxal_deC PF00282 362 - 646 9.9e-86 Pyridoxal-dependent decarboxylase conserved domain
PPR_2 PF13041 922 - 968 4.2e-07 PPR repeat family
PPR_long PF17177 948 - 1090 1.2e-06 Pentacotripeptide-repeat region of PRORP
PPR_2 PF13041 958 - 1003 2.7e-10 PPR repeat family
PPR_1 PF12854 986 - 1018 1.2e-10 PPR repeat
PPR PF01535 992 - 1022 1.5e-07 PPR repeat
PPR_2 PF13041 994 - 1039 9.7e-08 PPR repeat family
PPR_2 PF13041 1027 - 1075 6.9e-09 PPR repeat family
TPR_24 PF23276 1032 - 1124 2.2e-06 Fungal tetratrico peptide repeats
PPR_3 PF13812 1051 - 1110 4.7e-07 Pentatricopeptide repeat domain
PPR_1 PF12854 1059 - 1090 3.3e-09 PPR repeat
PPR_2 PF13041 1062 - 1110 1.8e-12 PPR repeat family
PPR_3 PF13812 1087 - 1144 1.5e-10 Pentatricopeptide repeat domain
PPR_1 PF12854 1093 - 1125 7.7e-06 PPR repeat
PPR_2 PF13041 1097 - 1142 4.4e-13 PPR repeat family
PPR_1 PF12854 1129 - 1160 5.1e-06 PPR repeat
PPR_2 PF13041 1132 - 1179 7.6e-12 PPR repeat family
PPR PF01535 1136 - 1165 9.2e-06 PPR repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014350)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G73400
fragaria_vesca FvH4_5g17981
malus_domestica MD14G1242500.v1.1
prunus_persica Prupe.5G240200_v2.0.a1
pyrus_communis pycom06g21040 pycom06g21050
rosa_chinensis RchiOBHm_Chr7g0177611 RchiOBHm_Chr7g0224181
rosa_laevigata RLG00000005521
rosa_multiflora Rmu_ssc0000330.1_g000014
rosa_rugosa Rorug06G0407800
rosa_samantha Rh7AG007100 Rh7BG007100 Rh7CG007600 Rh7DG007200 Rh7DG007300
rosa_wichuraiana Rw7G000610

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 3306, 3411
Acc36I ACCTGC 1 cut(s) 1276
AccII CGCG 1 cut(s) 351
AccIII TCCGGA 1 cut(s) 390
AciI CCGC 8 cut(s) 15, 378, 1041, 1074, 1882, 2084, 2510, 3742
AclWI GGATC 6 cut(s) 554, 561, 733, 1177, 1726, 3440
AcoI YGGCCR 1 cut(s) 1618
AcsI RAATTY 5 cut(s) 27, 401, 1890, 2241, 2720
AcuI CTGAAG 3 cut(s) 1158, 1349, 3377
AdeI CACNNNGTG 2 cut(s) 1957, 2393
AfaI GTAC 9 cut(s) 535, 847, 2427, 2578, 2585, 2690, 2814, 3067, 3431
AfiI CCNNNNNNNGG 6 cut(s) 339, 397, 722, 2080, 2205, 2921
AjnI CCWGG 2 cut(s) 1917, 2218
AjuI GAANNNNNNNTTGG 4 cut(s) 1134, 1166, 2768, 2800
AleI CACNNNNGTG 1 cut(s) 477
AloI GAACNNNNNNTCC 2 cut(s) 1983, 2015
Alw21I GWGCWC 4 cut(s) 607, 1855, 3499, 3768
Alw26I GTCTC 5 cut(s) 876, 1490, 2083, 3458, 3575
Alw44I GTGCAC 1 cut(s) 3495
AlwI GGATC 6 cut(s) 554, 561, 733, 1177, 1726, 3440
AlwNI CAGNNNCTG 1 cut(s) 2177
Ama87I CYCGRG 1 cut(s) 361
Aor13HI TCCGGA 1 cut(s) 390
AoxI GGCC 7 cut(s) 701, 952, 1195, 1618, 1630, 2512, 3246
ApaLI GTGCAC 1 cut(s) 3495
ApoI RAATTY 5 cut(s) 27, 401, 1890, 2241, 2720
ArsI GACNNNNNNTTYG 2 cut(s) 2425, 2457
Asp700I GAANNNNTTC 1 cut(s) 2597
AspLEI GCGC 3 cut(s) 351, 1552, 3115
AspS9I GGNCC 2 cut(s) 1366, 2512
AsuC2I CCSGG 1 cut(s) 564
AvaI CYCGRG 1 cut(s) 361
AvaII GGWCC 1 cut(s) 1366
BaeGI GKGCMC 2 cut(s) 1917, 3499
BalI TGGCCA 1 cut(s) 1620
BanII GRGCYC 1 cut(s) 607
BarI GAAGNNNNNNTAC 4 cut(s) 829, 861, 3058, 3090
BbsI GAAGAC 1 cut(s) 2756
Bbv12I GWGCWC 4 cut(s) 607, 1855, 3499, 3768
BbvCI CCTCAGC 2 cut(s) 36, 1044
BceAI ACGGC 3 cut(s) 404, 1537, 2127
BciT130I CCWGG 2 cut(s) 1919, 2220
BciVI GTATCC 1 cut(s) 1346
BclI TGATCA 2 cut(s) 1723, 2530
BcnI CCSGG 1 cut(s) 564
BcoDI GTCTC 5 cut(s) 876, 1490, 2083, 3458, 3575
BfaI CTAG 8 cut(s) 1199, 1308, 1424, 1761, 1868, 2417, 2486, 3396
BfmI CTRYAG 1 cut(s) 2714
BfoI RGCGCY 2 cut(s) 1553, 3116
BfuAI ACCTGC 1 cut(s) 1276
BfuI GTATCC 1 cut(s) 1346
BlpI GCTNAGC 1 cut(s) 374
Bme1390I CCNGG 3 cut(s) 564, 1919, 2220
Bme18I GGWCC 1 cut(s) 1366
BmeT110I CYCGRG 1 cut(s) 361
BmgT120I GGNCC 2 cut(s) 1366, 2512
BmiI GGNNCC 3 cut(s) 1368, 2273, 2655
BmrFI CCNGG 3 cut(s) 564, 1919, 2220
BmrI ACTGGG 2 cut(s) 1092, 1808
BmuI ACTGGG 2 cut(s) 1092, 1808
BpiI GAAGAC 1 cut(s) 2756
BplI GAGNNNNNCTC 2 cut(s) 640, 672
Bpu10I CCTNAGC 3 cut(s) 36, 1044, 2541
Bpu1102I GCTNAGC 1 cut(s) 374
BpuEI CTTGAG 1 cut(s) 1592
BpuMI CCSGG 1 cut(s) 564
BsaAI YACGTR 2 cut(s) 533, 989
BsaBI GATNNNNATC 1 cut(s) 558
BsaI GGTCTC 1 cut(s) 876
BsaJI CCNNGG 5 cut(s) 333, 736, 1014, 1917, 3024
BsaWI WCCGGW 3 cut(s) 390, 572, 1271
BsaXI ACNNNNNCTCC 4 cut(s) 1266, 1296, 3739, 3769
Bsc4I CCNNNNNNNGG 6 cut(s) 339, 397, 722, 2080, 2205, 2921
Bse1I ACTGG 5 cut(s) 1087, 1533, 1803, 2199, 2940
Bse3DI GCAATG 1 cut(s) 3514
Bse8I GATNNNNATC 1 cut(s) 558
BseAI TCCGGA 1 cut(s) 390
BseBI CCWGG 2 cut(s) 1919, 2220
BseDI CCNNGG 5 cut(s) 333, 736, 1014, 1917, 3024
BseJI GATNNNNATC 1 cut(s) 558
BseLI CCNNNNNNNGG 6 cut(s) 339, 397, 722, 2080, 2205, 2921
BseMI GCAATG 1 cut(s) 3514
BseMII CTCAG 8 cut(s) 50, 189, 388, 869, 1035, 1790, 2112, 2555
BseNI ACTGG 5 cut(s) 1087, 1533, 1803, 2199, 2940
BseRI GAGGAG 9 cut(s) 24, 50, 1061, 1681, 2084, 2492, 3152, 3257, 3760
BseSI GKGCMC 2 cut(s) 1917, 3499
BseYI CCCAGC 4 cut(s) 181, 187, 1293, 2382
BsgI GTGCAG 4 cut(s) 69, 1304, 2824, 3422
Bsh1236I CGCG 1 cut(s) 351
BshFI GGCC 7 cut(s) 703, 954, 1197, 1620, 1632, 2514, 3248
BsiHKAI GWGCWC 4 cut(s) 607, 1855, 3499, 3768
BsiHKCI CYCGRG 1 cut(s) 361
BsiSI CCGG 6 cut(s) 391, 564, 573, 1272, 2074, 2759
BslFI GGGAC 3 cut(s) 1174, 1592, 3171
BslI CCNNNNNNNGG 6 cut(s) 339, 397, 722, 2080, 2205, 2921
BsmAI GTCTC 5 cut(s) 876, 1490, 2083, 3458, 3575
BsmFI GGGAC 3 cut(s) 1174, 1592, 3171
BsmI GAATGC 1 cut(s) 905
BsnI GGCC 7 cut(s) 703, 954, 1197, 1620, 1632, 2514, 3248
Bso31I GGTCTC 1 cut(s) 876
BsoBI CYCGRG 1 cut(s) 361
Bsp1286I GDGCHC 5 cut(s) 607, 1855, 1917, 3499, 3768
Bsp13I TCCGGA 1 cut(s) 390
Bsp1407I TGTACA 2 cut(s) 2812, 3065
Bsp1720I GCTNAGC 1 cut(s) 374
BspACI CCGC 8 cut(s) 15, 378, 1041, 1074, 1882, 2084, 2510, 3742
BspANI GGCC 7 cut(s) 703, 954, 1197, 1620, 1632, 2514, 3248
BspCNI CTCAG 8 cut(s) 49, 188, 387, 870, 1036, 1789, 2111, 2554
BspEI TCCGGA 1 cut(s) 390
BspFNI CGCG 1 cut(s) 351
BspHI TCATGA 3 cut(s) 2533, 3048, 3102
BspLI GGNNCC 3 cut(s) 1368, 2273, 2655
BspMAI CTGCAG 1 cut(s) 2718
BspMI ACCTGC 1 cut(s) 1276
BspPI GGATC 6 cut(s) 554, 561, 733, 1177, 1726, 3440
BspTNI GGTCTC 1 cut(s) 876
BsrDI GCAATG 1 cut(s) 3514
BsrGI TGTACA 2 cut(s) 2812, 3065
BsrI ACTGG 5 cut(s) 1087, 1533, 1803, 2199, 2940
BssECI CCNNGG 5 cut(s) 333, 736, 1014, 1917, 3024
BssT1I CCWWGG 1 cut(s) 1014
Bst2UI CCWGG 2 cut(s) 1919, 2220
Bst4CI ACNGT 6 cut(s) 476, 791, 1165, 1957, 2179, 2296
Bst6I CTCTTC 3 cut(s) 624, 2627, 2934
BstAUI TGTACA 2 cut(s) 2812, 3065
BstBAI YACGTR 2 cut(s) 533, 989
BstC8I GCNNGC 7 cut(s) 799, 976, 1191, 1195, 1949, 2019, 2512
BstDEI CTNAG 9 cut(s) 36, 175, 374, 540, 878, 1044, 1776, 2098, 2541
BstEII GGTNACC 3 cut(s) 278, 3019, 3281
BstFNI CGCG 1 cut(s) 351
BstH2I RGCGCY 2 cut(s) 1553, 3116
BstHHI GCGC 3 cut(s) 351, 1552, 3115
BstMAI GTCTC 5 cut(s) 876, 1490, 2083, 3458, 3575
BstMWI GCNNNNNNNGC 8 cut(s) 18, 465, 494, 1145, 1199, 1690, 2996, 3400
BstNI CCWGG 2 cut(s) 1919, 2220
BstNSI RCATGY 1 cut(s) 834
BstPI GGTNACC 3 cut(s) 278, 3019, 3281
BstSCI CCNGG 3 cut(s) 562, 1917, 2218
BstSFI CTRYAG 1 cut(s) 2714
BstSLI GKGCMC 2 cut(s) 1917, 3499
BstSNI TACGTA 1 cut(s) 533
BstUI CGCG 1 cut(s) 351
BstV2I GAAGAC 1 cut(s) 2756
BstX2I RGATCY 3 cut(s) 559, 1169, 1718
BstXI CCANNNNNNTGG 1 cut(s) 1628
BstYI RGATCY 3 cut(s) 559, 1169, 1718
BsuI GTATCC 1 cut(s) 1346
BsuRI GGCC 7 cut(s) 703, 954, 1197, 1620, 1632, 2514, 3248
BtgZI GCGATG 2 cut(s) 366, 933
BtsI GCAGTG 1 cut(s) 2132
BveI ACCTGC 1 cut(s) 1276
Cac8I GCNNGC 7 cut(s) 799, 976, 1191, 1195, 1949, 2019, 2512
CaiI CAGNNNCTG 1 cut(s) 2177
CciI TCATGA 3 cut(s) 2533, 3048, 3102
CfoI GCGC 3 cut(s) 351, 1552, 3115
Cfr13I GGNCC 2 cut(s) 1366, 2512
CseI GACGC 2 cut(s) 2761, 3729
Csp6I GTAC 9 cut(s) 534, 846, 2426, 2577, 2584, 2689, 2813, 3066, 3430
CspCI CAANNNNNGTGG 4 cut(s) 471, 506, 1597, 1632
CviQI GTAC 9 cut(s) 534, 846, 2426, 2577, 2584, 2689, 2813, 3066, 3430
DdeI CTNAG 9 cut(s) 36, 175, 374, 540, 878, 1044, 1776, 2098, 2541
DraI TTTAAA 1 cut(s) 1207
DraIII CACNNNGTG 2 cut(s) 1957, 2393
EaeI YGGCCR 1 cut(s) 1618
Eam1104I CTCTTC 3 cut(s) 624, 2627, 2934
EarI CTCTTC 3 cut(s) 624, 2627, 2934
EciI GGCGGA 1 cut(s) 2099
Ecl136II GAGCTC 1 cut(s) 605
Eco105I TACGTA 1 cut(s) 533
Eco130I CCWWGG 1 cut(s) 1014
Eco147I AGGCCT 2 cut(s) 954, 3248
Eco24I GRGCYC 1 cut(s) 607
Eco31I GGTCTC 1 cut(s) 876
Eco47I GGWCC 1 cut(s) 1366
Eco53kI GAGCTC 1 cut(s) 605
Eco57I CTGAAG 3 cut(s) 1158, 1349, 3377
Eco88I CYCGRG 1 cut(s) 361
Eco91I GGTNACC 3 cut(s) 278, 3019, 3281
EcoICRI GAGCTC 1 cut(s) 605
EcoO65I GGTNACC 3 cut(s) 278, 3019, 3281
EcoRI GAATTC 2 cut(s) 27, 401
EcoRII CCWGG 2 cut(s) 1917, 2218
EcoT14I CCWWGG 1 cut(s) 1014
EcoT22I ATGCAT 1 cut(s) 907
EcoT38I GRGCYC 1 cut(s) 607
ErhI CCWWGG 1 cut(s) 1014
FalI AAGNNNNNCTT 2 cut(s) 942, 974
FaqI GGGAC 3 cut(s) 1174, 1592, 3171
FauI CCCGC 1 cut(s) 2503
FauNDI CATATG 3 cut(s) 706, 3162, 3687
FbaI TGATCA 2 cut(s) 1723, 2530
FriOI GRGCYC 1 cut(s) 607
FspBI CTAG 8 cut(s) 1199, 1308, 1424, 1761, 1868, 2417, 2486, 3396
GlaI GCGC 3 cut(s) 350, 1551, 3114
GsaI CCCAGC 4 cut(s) 185, 191, 1297, 2386
HaeII RGCGCY 2 cut(s) 1553, 3116
HaeIII GGCC 7 cut(s) 703, 954, 1197, 1620, 1632, 2514, 3248
HapII CCGG 6 cut(s) 391, 564, 573, 1272, 2074, 2759
HgaI GACGC 2 cut(s) 2761, 3729
HhaI GCGC 3 cut(s) 351, 1552, 3115
Hin6I GCGC 3 cut(s) 349, 1550, 3113
HinP1I GCGC 3 cut(s) 349, 1550, 3113
HincII GTYRAC 1 cut(s) 1000
HindII GTYRAC 1 cut(s) 1000
HindIII AAGCTT 2 cut(s) 2354, 3359
HinfI GANTC 9 cut(s) 136, 307, 515, 731, 983, 1087, 2091, 2911, 3623
HpaI GTTAAC 1 cut(s) 1000
HpaII CCGG 6 cut(s) 391, 564, 573, 1272, 2074, 2759
Hpy166II GTNNAC 6 cut(s) 157, 1000, 2426, 2691, 3497, 3589
Hpy8I GTNNAC 6 cut(s) 157, 1000, 2426, 2691, 3497, 3589
Hpy99I CGWCG 1 cut(s) 1691
HpyCH4III ACNGT 6 cut(s) 476, 791, 1165, 1957, 2179, 2296
HpyCH4IV ACGT 2 cut(s) 532, 988
HpyF10VI GCNNNNNNNGC 8 cut(s) 18, 465, 494, 1145, 1199, 1690, 2996, 3400
HpyF3I CTNAG 9 cut(s) 36, 175, 374, 540, 878, 1044, 1776, 2098, 2541
HpySE526I ACGT 2 cut(s) 532, 988
HspAI GCGC 3 cut(s) 349, 1550, 3113
Kpn2I TCCGGA 1 cut(s) 390
Ksp22I TGATCA 2 cut(s) 1723, 2530
KspAI GTTAAC 1 cut(s) 1000
MaeI CTAG 8 cut(s) 1199, 1308, 1424, 1761, 1868, 2417, 2486, 3396
MaeII ACGT 2 cut(s) 532, 988
MaeIII GTNAC 9 cut(s) 278, 1267, 1811, 2167, 2931, 2957, 3019, 3281, 3298
MfeI CAATTG 1 cut(s) 849
MflI RGATCY 3 cut(s) 559, 1169, 1718
MhlI GDGCHC 5 cut(s) 607, 1855, 1917, 3499, 3768
MlsI TGGCCA 1 cut(s) 1620
MluNI TGGCCA 1 cut(s) 1620
MlyI GAGTC 4 cut(s) 509, 725, 2085, 3617
MmeI TCCRAC 2 cut(s) 580, 1630
Mox20I TGGCCA 1 cut(s) 1620
Mph1103I ATGCAT 1 cut(s) 907
MroI TCCGGA 1 cut(s) 390
MroXI GAANNNNTTC 1 cut(s) 2597
MscI TGGCCA 1 cut(s) 1620
MseI TTAA 7 cut(s) 671, 969, 999, 1035, 1206, 1482, 2834
MslI CAYNNNNRTG 6 cut(s) 477, 1524, 1626, 1910, 3107, 3755
Msp20I TGGCCA 1 cut(s) 1620
MspA1I CMGCKG 5 cut(s) 15, 378, 1043, 1139, 3032
MspI CCGG 6 cut(s) 391, 564, 573, 1272, 2074, 2759
MspR9I CCNGG 3 cut(s) 564, 1919, 2220
MunI CAATTG 1 cut(s) 849
Mva1269I GAATGC 1 cut(s) 905
MvaI CCWGG 2 cut(s) 1919, 2220
MvnI CGCG 1 cut(s) 351
MwoI GCNNNNNNNGC 8 cut(s) 18, 465, 494, 1145, 1199, 1690, 2996, 3400
NciI CCSGG 1 cut(s) 564
NdeI CATATG 3 cut(s) 706, 3162, 3687
NlaIV GGNNCC 3 cut(s) 1368, 2273, 2655
NmeAIII GCCGAG 1 cut(s) 853
NmuCI GTSAC 4 cut(s) 278, 1267, 2167, 2957
NsiI ATGCAT 1 cut(s) 907
NspI RCATGY 1 cut(s) 834
OliI CACNNNNGTG 1 cut(s) 477
PagI TCATGA 3 cut(s) 2533, 3048, 3102
PceI AGGCCT 2 cut(s) 954, 3248
PctI GAATGC 1 cut(s) 905
PdmI GAANNNNTTC 1 cut(s) 2597
PfeI GAWTC 5 cut(s) 136, 307, 983, 1087, 2911
PflFI GACNNNGTC 1 cut(s) 1370
PfoI TCCNGGA 1 cut(s) 562
PleI GAGTC 4 cut(s) 509, 725, 2085, 3617
PpsI GAGTC 4 cut(s) 509, 725, 2085, 3617
Ppu21I YACGTR 2 cut(s) 533, 989
PsiI TTATAA 2 cut(s) 3306, 3411
Psp124BI GAGCTC 1 cut(s) 607
Psp6I CCWGG 2 cut(s) 1917, 2218
PspEI GGTNACC 3 cut(s) 278, 3019, 3281
PspFI CCCAGC 4 cut(s) 181, 187, 1293, 2382
PspGI CCWGG 2 cut(s) 1917, 2218
PspN4I GGNNCC 3 cut(s) 1368, 2273, 2655
PspPI GGNCC 2 cut(s) 1366, 2512
PstI CTGCAG 1 cut(s) 2718
PstNI CAGNNNCTG 1 cut(s) 2177
PsuI RGATCY 3 cut(s) 559, 1169, 1718
PsyI GACNNNGTC 1 cut(s) 1370
PvuII CAGCTG 2 cut(s) 1139, 3032
RsaI GTAC 9 cut(s) 535, 847, 2427, 2578, 2585, 2690, 2814, 3067, 3431
RsaNI GTAC 9 cut(s) 534, 846, 2426, 2577, 2584, 2689, 2813, 3066, 3430
RseI CAYNNNNRTG 6 cut(s) 477, 1524, 1626, 1910, 3107, 3755
SacI GAGCTC 1 cut(s) 607
SaqAI TTAA 7 cut(s) 671, 969, 999, 1035, 1206, 1482, 2834
Sau96I GGNCC 2 cut(s) 1366, 2512
SchI GAGTC 4 cut(s) 509, 725, 2085, 3617
ScrFI CCNGG 3 cut(s) 564, 1919, 2220
SduI GDGCHC 5 cut(s) 607, 1855, 1917, 3499, 3768
SfcI CTRYAG 1 cut(s) 2714
SinI GGWCC 1 cut(s) 1366
SmiMI CAYNNNNRTG 6 cut(s) 477, 1524, 1626, 1910, 3107, 3755
SmlI CTYRAG 1 cut(s) 1571
SmoI CTYRAG 1 cut(s) 1571
SnaBI TACGTA 1 cut(s) 533
SseBI AGGCCT 2 cut(s) 954, 3248
SsiI CCGC 8 cut(s) 15, 378, 1041, 1074, 1882, 2084, 2510, 3742
SspI AATATT 1 cut(s) 994
SspMI CTAG 8 cut(s) 1199, 1308, 1424, 1761, 1868, 2417, 2486, 3396
SstI GAGCTC 1 cut(s) 607
StuI AGGCCT 2 cut(s) 954, 3248
StyD4I CCNGG 3 cut(s) 562, 1917, 2218
StyI CCWWGG 1 cut(s) 1014
TaaI ACNGT 6 cut(s) 476, 791, 1165, 1957, 2179, 2296
TaiI ACGT 2 cut(s) 535, 991
TaqII GACCGA 1 cut(s) 266
TatI WGTACW 5 cut(s) 2583, 2688, 2812, 3065, 3429
TauI GCSGC 3 cut(s) 18, 381, 1076
TfiI GAWTC 5 cut(s) 136, 307, 983, 1087, 2911
Tru1I TTAA 7 cut(s) 671, 969, 999, 1035, 1206, 1482, 2834
Tru9I TTAA 7 cut(s) 671, 969, 999, 1035, 1206, 1482, 2834
TseFI GTSAC 4 cut(s) 278, 1267, 2167, 2957
Tsp45I GTSAC 4 cut(s) 278, 1267, 2167, 2957
TspGWI ACGGA 2 cut(s) 1574, 2708
Tth111I GACNNNGTC 1 cut(s) 1370
VneI GTGCAC 1 cut(s) 3495
VpaK11BI GGWCC 1 cut(s) 1366
XapI RAATTY 5 cut(s) 27, 401, 1890, 2241, 2720
XceI RCATGY 1 cut(s) 834
XcmI CCANNNNNNNNNTGG 2 cut(s) 300, 2206
XmnI GAANNNNTTC 1 cut(s) 2597
XspI CTAG 8 cut(s) 1199, 1308, 1424, 1761, 1868, 2417, 2486, 3396
Zsp2I ATGCAT 1 cut(s) 907
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.