Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000430.1

Orthogroup ID

OG0005640

Physical Location & Seq

Genomic Coordinates Reverse (-)

22074 .. 24083

Gene Structure 2010 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 585 bp

atggccgatgaatcaaataagagattggtctacgaagaagctaagaaggctgttgagagagatagatcgatggttaaagtctctgaactgtctaggcatggactcatggaaataacgagaaagagagtacgacctagtgtgacatttatgattagtgaaccatgtacttgttgtcatgccactgggagagtagaagccttagagacctcgttctccaaaattgaacaagaaatttctcgattgctggcaatgatggaacggaaaccagacccagagaacccaaaatcttggccaaagttcattctgagagttgaccatcacatgtgtgactacttaacttctgggaaaaggacaagacttgcattgttgagtagttccctcaaagcttggattctactaaaggtggctagaggtttcactaggggtgcatttgaggtaaaaccatttacagatgaaaaggcacacaaagatctgcagcaagtcaccatttcaatgattcgacctacagaagccagaagaactaacaatcctggaaaaagggtgaccctatttccggtaaagaaatggaagggtggtgggaaatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004518 GO:0004519 GO:0004521 GO:0004540 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006364 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0009507 GO:0009536 GO:0009657 GO:0009658 GO:0009987 GO:0010239 GO:0010467 GO:0016043 GO:0016070 GO:0016071 GO:0016072 GO:0016787 GO:0016788 GO:0022613 GO:0031425 GO:0034470 GO:0034641 GO:0034660 GO:0042254 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044085 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0071704 GO:0071840 GO:0090304 GO:0090305 GO:0090501 GO:0090502 GO:0140098 GO:1901259 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CBM_20 RNase_E_G

Protein Analysis

194

Amino Acids

22.29

Weight (kDa)

10.01

Isoelectric Point (pI)

47.61

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RNase_E_G	PF10150	1 - 43	9.8e-08	Ribonuclease E/G family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005640)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G04270 AT2G04270 AT2G04270 AT2G04270 AT2G04270 AT2G04270 AT2G04270 AT2G04270 AT2G04270
fragaria_vesca	FvH4_6g40410
malus_domestica	MD09G1130200.v1.1 MD17G1105400.v1.1
prunus_persica	Prupe.3G194900_v2.0.a1 Prupe.3G194900_v2.0.a1
pyrus_communis	pycom09g05330 pycom17g10950 pycom17g10970
rosa_chinensis	RchiOBHm_Chr2g0155641
rosa_laevigata	RLG00000020850
rosa_multiflora	Rmu_ssc0000430.1_g000006
rosa_roxburghii	Rroxscaffold_2G00093600
rosa_rugosa	Rorug02G0448700 Rorug02G0448700
rosa_samantha	Rh2AG514800 Rh2BG525700 Rh2CG499700 Rh2DG534600
rosa_wichuraiana	Rw2G042300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	30
AcoI	YGGCCR	2 cut(s)	3, 290
AcsI	RAATTY	1 cut(s)	231
AfaI	GTAC	2 cut(s)	129, 166
AfiI	CCNNNNNNNGG	1 cut(s)	553
AflIII	ACRYGT	1 cut(s)	321
AgsI	TTSAA	2 cut(s)	224, 492
AjnI	CCWGG	1 cut(s)	529
AleI	CACNNNNGTG	1 cut(s)	324
AloI	GAACNNNNNNTCC	2 cut(s)	511, 543
AluBI	AGCT	2 cut(s)	41, 386
AluI	AGCT	2 cut(s)	41, 386
Alw26I	GTCTC	2 cut(s)	85, 197
AoxI	GGCC	2 cut(s)	3, 290
ApeKI	GCWGC	1 cut(s)	475
ApoI	RAATTY	1 cut(s)	231
AsuHPI	GGTGA	2 cut(s)	475, 553
BalI	TGGCCA	1 cut(s)	292
BbvI	GCAGC	1 cut(s)	487
BccI	CCATC	3 cut(s)	64, 247, 324
BciT130I	CCWGG	1 cut(s)	531
BcoDI	GTCTC	2 cut(s)	85, 197
BfaI	CTAG	4 cut(s)	93, 135, 408, 420
BfmI	CTRYAG	2 cut(s)	473, 504
BglII	AGATCT	1 cut(s)	469
BisI	GCNGC	1 cut(s)	476
BlsI	GCNGC	1 cut(s)	477
Bme1390I	CCNGG	1 cut(s)	531
BmrFI	CCNGG	1 cut(s)	531
BmrI	ACTGGG	1 cut(s)	192
BmuI	ACTGGG	1 cut(s)	192
Bsa29I	ATCGAT	1 cut(s)	68
BsaI	GGTCTC	1 cut(s)	197
BsaWI	WCCGGW	1 cut(s)	553
Bsc4I	CCNNNNNNNGG	1 cut(s)	553
Bse1I	ACTGG	1 cut(s)	187
Bse3DI	GCAATG	1 cut(s)	255
BseBI	CCWGG	1 cut(s)	531
BseCI	ATCGAT	1 cut(s)	68
BseLI	CCNNNNNNNGG	1 cut(s)	553
BseMI	GCAATG	1 cut(s)	255
BseMII	CTCAG	1 cut(s)	296
BseNI	ACTGG	1 cut(s)	187
BseXI	GCAGC	1 cut(s)	487
BshFI	GGCC	2 cut(s)	5, 292
BshVI	ATCGAT	1 cut(s)	68
BsiSI	CCGG	1 cut(s)	554
BslI	CCNNNNNNNGG	1 cut(s)	553
BsmAI	GTCTC	2 cut(s)	85, 197
BsnI	GGCC	2 cut(s)	5, 292
Bso31I	GGTCTC	1 cut(s)	197
Bsp143I	GATC	2 cut(s)	65, 469
BspANI	GGCC	2 cut(s)	5, 292
BspCNI	CTCAG	1 cut(s)	297
BspDI	ATCGAT	1 cut(s)	68
BspMAI	CTGCAG	1 cut(s)	477
BspTNI	GGTCTC	1 cut(s)	197
BsrDI	GCAATG	1 cut(s)	255
BsrI	ACTGG	1 cut(s)	187
BssMI	GATC	2 cut(s)	65, 469
Bst2UI	CCWGG	1 cut(s)	531
Bst4CI	ACNGT	1 cut(s)	90
BstC8I	GCNNGC	1 cut(s)	246
BstDEI	CTNAG	3 cut(s)	42, 199, 305
BstEII	GGTNACC	1 cut(s)	541
BstKTI	GATC	2 cut(s)	68, 472
BstMAI	GTCTC	2 cut(s)	85, 197
BstMBI	GATC	2 cut(s)	65, 469
BstMWI	GCNNNNNNNGC	1 cut(s)	47
BstNI	CCWGG	1 cut(s)	531
BstNSI	RCATGY	1 cut(s)	325
BstPI	GGTNACC	1 cut(s)	541
BstSCI	CCNGG	1 cut(s)	529
BstSFI	CTRYAG	2 cut(s)	473, 504
BstV1I	GCAGC	1 cut(s)	487
BstX2I	RGATCY	1 cut(s)	469
BstXI	CCANNNNNNTGG	1 cut(s)	288
BstYI	RGATCY	1 cut(s)	469
Bsu15I	ATCGAT	1 cut(s)	68
BsuRI	GGCC	2 cut(s)	5, 292
BsuTUI	ATCGAT	1 cut(s)	68
BtsIMutI	CAGTG	1 cut(s)	180
Cac8I	GCNNGC	1 cut(s)	246
ClaI	ATCGAT	1 cut(s)	68
Csp6I	GTAC	2 cut(s)	128, 165
CviAII	CATG	5 cut(s)	98, 106, 162, 176, 322
CviJI	RGCY	8 cut(s)	5, 41, 50, 197, 292, 386, 407, 512
CviKI_1	RGCY	8 cut(s)	5, 41, 50, 197, 292, 386, 407, 512
CviQI	GTAC	2 cut(s)	128, 165
DdeI	CTNAG	3 cut(s)	42, 199, 305
DpnI	GATC	2 cut(s)	67, 471
DpnII	GATC	2 cut(s)	65, 469
EaeI	YGGCCR	2 cut(s)	3, 290
Eco31I	GGTCTC	1 cut(s)	197
Eco91I	GGTNACC	1 cut(s)	541
EcoO65I	GGTNACC	1 cut(s)	541
EcoRII	CCWGG	1 cut(s)	529
FaeI	CATG	5 cut(s)	101, 109, 165, 179, 325
FaiI	YATR	6 cut(s)	99, 107, 149, 163, 177, 323
FatI	CATG	5 cut(s)	97, 105, 161, 175, 321
FblI	GTMKAC	1 cut(s)	30
Fnu4HI	GCNGC	1 cut(s)	476
Fsp4HI	GCNGC	1 cut(s)	476
FspBI	CTAG	4 cut(s)	93, 135, 408, 420
GluI	GCNGC	1 cut(s)	476
HaeIII	GGCC	2 cut(s)	5, 292
HapII	CCGG	1 cut(s)	554
Hin1II	CATG	5 cut(s)	101, 109, 165, 179, 325
HincII	GTYRAC	1 cut(s)	313
HindII	GTYRAC	1 cut(s)	313
HindIII	AAGCTT	1 cut(s)	384
HinfI	GANTC	4 cut(s)	11, 102, 391, 496
HpaII	CCGG	1 cut(s)	554
HphI	GGTGA	2 cut(s)	475, 553
Hpy166II	GTNNAC	3 cut(s)	31, 158, 313
Hpy188I	TCNGA	2 cut(s)	85, 306
Hpy188III	TCNNGA	1 cut(s)	237
Hpy8I	GTNNAC	3 cut(s)	31, 158, 313
HpyAV	CCTTC	2 cut(s)	40, 562
HpyCH4III	ACNGT	1 cut(s)	90
HpyCH4V	TGCA	3 cut(s)	362, 428, 475
HpyF10VI	GCNNNNNNNGC	1 cut(s)	47
HpyF3I	CTNAG	3 cut(s)	42, 199, 305
Hsp92II	CATG	5 cut(s)	101, 109, 165, 179, 325
Kzo9I	GATC	2 cut(s)	65, 469
LpnPI	CCDG	9 cut(s)	168, 230, 279, 285, 327, 516, 526, 543, 567
Lsp1109I	GCAGC	1 cut(s)	487
MaeI	CTAG	4 cut(s)	93, 135, 408, 420
MaeIII	GTNAC	4 cut(s)	139, 326, 481, 541
MalI	GATC	2 cut(s)	67, 471
MboI	GATC	2 cut(s)	65, 469
MboII	GAAGA	2 cut(s)	47, 528
MflI	RGATCY	1 cut(s)	469
MlsI	TGGCCA	1 cut(s)	292
MluCI	AATT	2 cut(s)	219, 231
MluNI	TGGCCA	1 cut(s)	292
MlyI	GAGTC	1 cut(s)	96
MnlI	CCTC	4 cut(s)	217, 389, 404, 427
Mox20I	TGGCCA	1 cut(s)	292
MscI	TGGCCA	1 cut(s)	292
MseI	TTAA	2 cut(s)	75, 335
MslI	CAYNNNNRTG	2 cut(s)	324, 491
Msp20I	TGGCCA	1 cut(s)	292
MspI	CCGG	1 cut(s)	554
MspR9I	CCNGG	1 cut(s)	531
MvaI	CCWGG	1 cut(s)	531
MwoI	GCNNNNNNNGC	1 cut(s)	47
NdeII	GATC	2 cut(s)	65, 469
NlaIII	CATG	5 cut(s)	101, 109, 165, 179, 325
NmuCI	GTSAC	4 cut(s)	139, 326, 481, 541
NspI	RCATGY	1 cut(s)	325
OliI	CACNNNNGTG	1 cut(s)	324
PciI	ACATGT	1 cut(s)	321
PfeI	GAWTC	3 cut(s)	11, 391, 496
PfoI	TCCNGGA	1 cut(s)	529
PkrI	GCNGC	1 cut(s)	477
PleI	GAGTC	1 cut(s)	96
PpsI	GAGTC	1 cut(s)	96
PscI	ACATGT	1 cut(s)	321
Psp6I	CCWGG	1 cut(s)	529
PspEI	GGTNACC	1 cut(s)	541
PspGI	CCWGG	1 cut(s)	529
PstI	CTGCAG	1 cut(s)	477
PsuI	RGATCY	1 cut(s)	469
RsaI	GTAC	2 cut(s)	129, 166
RsaNI	GTAC	2 cut(s)	128, 165
RseI	CAYNNNNRTG	2 cut(s)	324, 491
SaqAI	TTAA	2 cut(s)	75, 335
SatI	GCNGC	1 cut(s)	476
Sau3AI	GATC	2 cut(s)	65, 469
SchI	GAGTC	1 cut(s)	96
ScrFI	CCNGG	1 cut(s)	531
SetI	ASST	8 cut(s)	43, 136, 209, 388, 405, 415, 438, 505
SfcI	CTRYAG	2 cut(s)	473, 504
SmiMI	CAYNNNNRTG	2 cut(s)	324, 491
Sse9I	AATT	2 cut(s)	219, 231
SspMI	CTAG	4 cut(s)	93, 135, 408, 420
StyD4I	CCNGG	1 cut(s)	529
TaaI	ACNGT	1 cut(s)	90
TaqI	TCGA	3 cut(s)	68, 238, 499
TasI	AATT	2 cut(s)	219, 231
TatI	WGTACW	1 cut(s)	164
TfiI	GAWTC	3 cut(s)	11, 391, 496
Tru1I	TTAA	2 cut(s)	75, 335
Tru9I	TTAA	2 cut(s)	75, 335
TscAI	CASTG	1 cut(s)	187
TseFI	GTSAC	4 cut(s)	139, 326, 481, 541
TseI	GCWGC	1 cut(s)	475
Tsp45I	GTSAC	4 cut(s)	139, 326, 481, 541
TspDTI	ATGAA	3 cut(s)	24, 289, 468
TspGWI	ACGGA	1 cut(s)	274
TspRI	CASTG	1 cut(s)	187
XapI	RAATTY	1 cut(s)	231
XceI	RCATGY	1 cut(s)	325
XmiI	GTMKAC	1 cut(s)	30
XspI	CTAG	4 cut(s)	93, 135, 408, 420

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.