Rmu_ssc0000465.1_g000023

Sin3 binding region of histone deacetylase complex subunit SAP30

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_ssc0000465.1
OG0010563
Physical Location & Seq
Reverse (-)
93912 .. 98202
4291 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1122 bp
atgctagagcctgagctgtgtgcttctagggtgctgtcaccttctcatgacgaaagtggggatgatgagctttcagttcttcccaggcacactaaggtaattgttactgggaacaacagaacaaagtctgtgttggtgggtctacagggagtggtcaagaaagcggttgggcttggtggttggcactggctggttctgaaaaatggcgttgaagtcaagctgcaaaggaacgcattgagtgtgctggaacatcctacagggaatgaggaagatttcgacaatgattatgataactctagcagtagctctgaactgggtgtgaaggagaatgatttcactaggagtcttcagttccacagacatgataaaccaagatttcggtatccaaaatcatatgttccatccaccaagtcgatttatcgtggcagttatcaagaatttcagtccatccacaaacctcagctgagagtaaacatggcaaaactaggaacaagcactttgcggaggtactgcaggcacttcaaccttgtgggcatggatgatcagagagtaaacatggcaaaactaggaacaagcactttgcggaggtactgcaggcacttcaaccttgtaagcagctatcctaatccaacgagggagcaactgattaacgttgtgcaacgacattttacgtcacagctgatgcgattggatgaggtatcagtgatcactgaatttgtcaatgctgcaaggaggcgcaaatctgccgagttggctaggaaacgtacagaacgagaaataaacaagtccaccttcctccttttccccgattccgattccgatttcgattccgatcgacgcctctccgccgtcaccaggtactcactctcgctaactctccatctcgagaaaaaccgccgcttaatttgtcccggtgacgattcattcccccgatttcgattccgatcgacgcctctcctccgtcaccaggtactcactctcgctaactctccatctcgagaaaaaccgccgcttaatttgtcccgtttcgttggaaattttaagaagctgggggtgttggaacgtggaaatcgtgtgttaggtttgaagcgcaaggggatatgtggtgccgagtacctatag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
SAP30_Sin3_bdg

Protein Analysis

373

Amino Acids

42.83

Weight (kDa)

10.0

Isoelectric Point (pI)

45.61

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SAP30_Sin3_bdg PF13867 189 - 244 2.2e-18 Sin3 binding region of histone deacetylase complex subunit SAP30
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 1106
AccI GTMKAC 1 cut(s) 142
AciI CCGC 8 cut(s) 164, 502, 583, 846, 895, 898, 1007, 1010
AclI AACGTT 1 cut(s) 651
AcsI RAATTY 3 cut(s) 437, 713, 1036
AcuI CTGAAG 1 cut(s) 332
AcyI GRCGYC 2 cut(s) 838, 950
AfaI GTAC 6 cut(s) 509, 590, 766, 860, 972, 1115
AfiI CCNNNNNNNGG 2 cut(s) 855, 967
AgsI TTSAA 4 cut(s) 212, 523, 604, 1087
AjnI CCWGG 3 cut(s) 83, 854, 966
AluBI AGCT 8 cut(s) 16, 70, 220, 306, 463, 618, 679, 1048
AluI AGCT 8 cut(s) 16, 70, 220, 306, 463, 618, 679, 1048
Ama87I CYCGRG 2 cut(s) 884, 996
ApeKI GCWGC 3 cut(s) 220, 615, 725
ApoI RAATTY 3 cut(s) 437, 713, 1036
Asp700I GAANNNNTTC 1 cut(s) 332
AspLEI GCGC 2 cut(s) 738, 1092
AsuC2I CCSGG 1 cut(s) 912
AsuHPI GGTGA 4 cut(s) 30, 844, 926, 956
AvaI CYCGRG 2 cut(s) 884, 996
BanI GGYRCC 1 cut(s) 1106
BbsI GAAGAC 1 cut(s) 338
BbvCI CCTCAGC 1 cut(s) 459
BbvI GCAGC 3 cut(s) 207, 627, 712
BccI CCATC 4 cut(s) 409, 455, 888, 1000
BceAI ACGGC 1 cut(s) 833
BciT130I CCWGG 3 cut(s) 85, 856, 968
BciVI GTATCC 1 cut(s) 393
BclI TGATCA 2 cut(s) 541, 705
BcnI CCSGG 1 cut(s) 912
BfaI CTAG 7 cut(s) 5, 27, 297, 339, 485, 566, 756
BfmI CTRYAG 5 cut(s) 143, 255, 511, 592, 1118
BfuI GTATCC 1 cut(s) 393
BglI GCCNNNNNGGC 1 cut(s) 752
BisI GCNGC 5 cut(s) 221, 616, 726, 898, 1010
BlsI GCNGC 5 cut(s) 222, 617, 727, 899, 1011
Bme1390I CCNGG 4 cut(s) 85, 856, 912, 968
BmeT110I CYCGRG 2 cut(s) 884, 996
BmiI GGNNCC 1 cut(s) 1108
BmrFI CCNGG 4 cut(s) 85, 856, 912, 968
BmrI ACTGGG 2 cut(s) 117, 323
BmsI GCATC 1 cut(s) 672
BmuI ACTGGG 2 cut(s) 117, 323
BpiI GAAGAC 1 cut(s) 338
Bpu10I CCTNAGC 2 cut(s) 12, 459
BpuMI CCSGG 1 cut(s) 912
BsaBI GATNNNNATC 2 cut(s) 831, 943
BsaHI GRCGYC 2 cut(s) 838, 950
BsaJI CCNNGG 1 cut(s) 83
Bsc4I CCNNNNNNNGG 2 cut(s) 855, 967
Bse1I ACTGG 3 cut(s) 112, 191, 318
Bse8I GATNNNNATC 2 cut(s) 831, 943
BseBI CCWGG 3 cut(s) 85, 856, 968
BseDI CCNNGG 1 cut(s) 83
BseGI GGATG 6 cut(s) 67, 250, 401, 447, 544, 697
BseJI GATNNNNATC 2 cut(s) 831, 943
BseLI CCNNNNNNNGG 2 cut(s) 855, 967
BseMII CTCAG 2 cut(s) 455, 473
BseNI ACTGG 3 cut(s) 112, 191, 318
BseRI GAGGAG 1 cut(s) 947
BseXI GCAGC 3 cut(s) 207, 627, 712
BseYI CCCAGC 1 cut(s) 1048
Bsh1285I CGRYCG 2 cut(s) 835, 947
BshNI GGYRCC 1 cut(s) 1106
BsiEI CGRYCG 2 cut(s) 835, 947
BsiHKCI CYCGRG 2 cut(s) 884, 996
BsiSI CCGG 1 cut(s) 912
BslFI GGGAC 2 cut(s) 894, 1006
BslI CCNNNNNNNGG 2 cut(s) 855, 967
BsmFI GGGAC 2 cut(s) 894, 1006
BsoBI CYCGRG 2 cut(s) 884, 996
Bsp143I GATC 4 cut(s) 541, 705, 832, 944
BspACI CCGC 8 cut(s) 164, 502, 583, 846, 895, 898, 1007, 1010
BspCNI CTCAG 3 cut(s) 4, 456, 472
BspHI TCATGA 1 cut(s) 46
BspLI GGNNCC 1 cut(s) 1108
BspMAI CTGCAG 2 cut(s) 515, 596
BspT107I GGYRCC 1 cut(s) 1106
BsrI ACTGG 3 cut(s) 112, 191, 318
BssECI CCNNGG 1 cut(s) 83
BssMI GATC 4 cut(s) 541, 705, 832, 944
BssNI GRCGYC 2 cut(s) 838, 950
Bst2UI CCWGG 3 cut(s) 85, 856, 968
BstACI GRCGYC 2 cut(s) 838, 950
BstC8I GCNNGC 2 cut(s) 515, 596
BstDEI CTNAG 4 cut(s) 12, 93, 459, 464
BstF5I GGATG 6 cut(s) 67, 250, 401, 447, 544, 697
BstHHI GCGC 2 cut(s) 738, 1092
BstKTI GATC 4 cut(s) 544, 708, 835, 947
BstMBI GATC 4 cut(s) 541, 705, 832, 944
BstMCI CGRYCG 2 cut(s) 835, 947
BstMWI GCNNNNNNNGC 1 cut(s) 752
BstNI CCWGG 3 cut(s) 85, 856, 968
BstSCI CCNGG 4 cut(s) 83, 854, 910, 966
BstSFI CTRYAG 5 cut(s) 143, 255, 511, 592, 1118
BstV1I GCAGC 3 cut(s) 207, 627, 712
BstV2I GAAGAC 1 cut(s) 338
BsuI GTATCC 1 cut(s) 393
BtsCI GGATG 6 cut(s) 67, 250, 401, 447, 544, 697
BtsIMutI CAGTG 3 cut(s) 184, 708, 708
Cac8I GCNNGC 2 cut(s) 515, 596
CciI TCATGA 1 cut(s) 46
CfoI GCGC 2 cut(s) 738, 1092
CseI GACGC 2 cut(s) 846, 958
CsiI ACCWGGT 2 cut(s) 854, 966
Csp6I GTAC 6 cut(s) 508, 589, 765, 859, 971, 1114
CviAII CATG 5 cut(s) 47, 362, 475, 535, 556
CviQI GTAC 6 cut(s) 508, 589, 765, 859, 971, 1114
DdeI CTNAG 4 cut(s) 12, 93, 459, 464
DpnI GATC 4 cut(s) 543, 707, 834, 946
DpnII GATC 4 cut(s) 541, 705, 832, 944
EciI GGCGGA 1 cut(s) 835
Eco57I CTGAAG 1 cut(s) 332
Eco88I CYCGRG 2 cut(s) 884, 996
EcoRII CCWGG 3 cut(s) 83, 854, 966
FaeI CATG 5 cut(s) 50, 365, 478, 538, 559
FalI AAGNNNNNCTT 2 cut(s) 776, 808
FaqI GGGAC 2 cut(s) 894, 1006
FatI CATG 5 cut(s) 46, 361, 474, 534, 555
FauNDI CATATG 1 cut(s) 394
FbaI TGATCA 2 cut(s) 541, 705
FblI GTMKAC 1 cut(s) 142
Fnu4HI GCNGC 5 cut(s) 221, 616, 726, 898, 1010
FokI GGATG 6 cut(s) 74, 237, 388, 434, 551, 704
Fsp4HI GCNGC 5 cut(s) 221, 616, 726, 898, 1010
FspBI CTAG 7 cut(s) 5, 27, 297, 339, 485, 566, 756
GlaI GCGC 2 cut(s) 737, 1091
GluI GCNGC 5 cut(s) 221, 616, 726, 898, 1010
GsaI CCCAGC 1 cut(s) 1052
HapII CCGG 1 cut(s) 912
HgaI GACGC 2 cut(s) 846, 958
HhaI GCGC 2 cut(s) 738, 1092
Hin1I GRCGYC 2 cut(s) 838, 950
Hin1II CATG 5 cut(s) 50, 365, 478, 538, 559
Hin6I GCGC 2 cut(s) 736, 1090
HinP1I GCGC 2 cut(s) 736, 1090
HinfI GANTC 6 cut(s) 343, 809, 815, 827, 920, 939
HpaII CCGG 1 cut(s) 912
HphI GGTGA 4 cut(s) 30, 844, 926, 956
Hpy166II GTNNAC 4 cut(s) 143, 472, 553, 789
Hpy188I TCNGA 7 cut(s) 198, 310, 546, 814, 820, 832, 944
Hpy188III TCNNGA 7 cut(s) 47, 157, 434, 884, 886, 996, 998
Hpy8I GTNNAC 4 cut(s) 143, 472, 553, 789
Hpy99I CGWCG 2 cut(s) 840, 952
HpyAV CCTTC 3 cut(s) 51, 316, 802
HpyCH4IV ACGT 4 cut(s) 651, 671, 763, 1063
HpyCH4V TGCA 5 cut(s) 223, 513, 594, 658, 728
HpyF10VI GCNNNNNNNGC 1 cut(s) 752
HpyF3I CTNAG 4 cut(s) 12, 93, 459, 464
HpySE526I ACGT 4 cut(s) 651, 671, 763, 1063
Hsp92I GRCGYC 2 cut(s) 838, 950
Hsp92II CATG 5 cut(s) 50, 365, 478, 538, 559
HspAI GCGC 2 cut(s) 736, 1090
Ksp22I TGATCA 2 cut(s) 541, 705
Kzo9I GATC 4 cut(s) 541, 705, 832, 944
LmnI GCTCC 1 cut(s) 637
Lsp1109I GCAGC 3 cut(s) 207, 627, 712
LweI GCATC 1 cut(s) 672
MabI ACCWGGT 2 cut(s) 854, 966
MaeI CTAG 7 cut(s) 5, 27, 297, 339, 485, 566, 756
MaeII ACGT 4 cut(s) 651, 671, 763, 1063
MaeIII GTNAC 6 cut(s) 36, 103, 672, 850, 914, 962
MalI GATC 4 cut(s) 543, 707, 834, 946
MboI GATC 4 cut(s) 541, 705, 832, 944
MboII GAAGA 3 cut(s) 71, 281, 338
MluCI AATT 6 cut(s) 99, 437, 713, 903, 1015, 1036
MlyI GAGTC 1 cut(s) 352
MmeI TCCRAC 3 cut(s) 653, 1012, 1038
MroXI GAANNNNTTC 1 cut(s) 332
MseI TTAA 4 cut(s) 648, 902, 1014, 1041
MslI CAYNNNNRTG 1 cut(s) 360
MspA1I CMGCKG 2 cut(s) 463, 679
MspI CCGG 1 cut(s) 912
MspR9I CCNGG 4 cut(s) 85, 856, 912, 968
MvaI CCWGG 3 cut(s) 85, 856, 968
MwoI GCNNNNNNNGC 1 cut(s) 752
NciI CCSGG 1 cut(s) 912
NdeI CATATG 1 cut(s) 394
NdeII GATC 4 cut(s) 541, 705, 832, 944
NlaIII CATG 5 cut(s) 50, 365, 478, 538, 559
NlaIV GGNNCC 1 cut(s) 1108
NmeAIII GCCGAG 1 cut(s) 772
NmuCI GTSAC 5 cut(s) 36, 672, 850, 914, 962
PaeR7I CTCGAG 2 cut(s) 884, 996
PagI TCATGA 1 cut(s) 46
PcsI WCGNNNNNNNCGW 2 cut(s) 769, 1069
PdmI GAANNNNTTC 1 cut(s) 332
PfeI GAWTC 5 cut(s) 809, 815, 827, 920, 939
PkrI GCNGC 5 cut(s) 222, 617, 727, 899, 1011
Ple19I CGATCG 2 cut(s) 835, 947
PleI GAGTC 1 cut(s) 351
PpsI GAGTC 1 cut(s) 351
Psp1406I AACGTT 1 cut(s) 651
Psp6I CCWGG 3 cut(s) 83, 854, 966
PspFI CCCAGC 1 cut(s) 1048
PspGI CCWGG 3 cut(s) 83, 854, 966
PspN4I GGNNCC 1 cut(s) 1108
PstI CTGCAG 2 cut(s) 515, 596
PvuI CGATCG 2 cut(s) 835, 947
PvuII CAGCTG 2 cut(s) 463, 679
RsaI GTAC 6 cut(s) 509, 590, 766, 860, 972, 1115
RsaNI GTAC 6 cut(s) 508, 589, 765, 859, 971, 1114
RseI CAYNNNNRTG 1 cut(s) 360
SaqAI TTAA 4 cut(s) 648, 902, 1014, 1041
SatI GCNGC 5 cut(s) 221, 616, 726, 898, 1010
Sau3AI GATC 4 cut(s) 541, 705, 832, 944
SchI GAGTC 1 cut(s) 352
ScrFI CCNGG 4 cut(s) 85, 856, 912, 968
SexAI ACCWGGT 2 cut(s) 854, 966
SfaNI GCATC 1 cut(s) 672
SfcI CTRYAG 5 cut(s) 143, 255, 511, 592, 1118
Sfr274I CTCGAG 2 cut(s) 884, 996
SlaI CTCGAG 2 cut(s) 884, 996
SmiMI CAYNNNNRTG 1 cut(s) 360
SmlI CTYRAG 2 cut(s) 884, 996
SmoI CTYRAG 2 cut(s) 884, 996
Sse9I AATT 6 cut(s) 99, 437, 713, 903, 1015, 1036
SsiI CCGC 8 cut(s) 164, 502, 583, 846, 895, 898, 1007, 1010
SspMI CTAG 7 cut(s) 5, 27, 297, 339, 485, 566, 756
StyD4I CCNGG 4 cut(s) 83, 854, 910, 966
TaiI ACGT 4 cut(s) 654, 674, 766, 1066
TaqI TCGA 8 cut(s) 276, 413, 825, 835, 885, 937, 947, 997
TasI AATT 6 cut(s) 99, 437, 713, 903, 1015, 1036
TauI GCSGC 2 cut(s) 900, 1012
TfiI GAWTC 5 cut(s) 809, 815, 827, 920, 939
Tru1I TTAA 4 cut(s) 648, 902, 1014, 1041
Tru9I TTAA 4 cut(s) 648, 902, 1014, 1041
TscAI CASTG 3 cut(s) 191, 708, 715
TseFI GTSAC 5 cut(s) 36, 672, 850, 914, 962
TseI GCWGC 3 cut(s) 220, 615, 725
Tsp45I GTSAC 5 cut(s) 36, 672, 850, 914, 962
TspDTI ATGAA 1 cut(s) 912
TspGWI ACGGA 1 cut(s) 950
TspRI CASTG 3 cut(s) 191, 708, 715
XapI RAATTY 3 cut(s) 437, 713, 1036
XhoI CTCGAG 2 cut(s) 884, 996
XmiI GTMKAC 1 cut(s) 142
XmnI GAANNNNTTC 1 cut(s) 332
XspI CTAG 7 cut(s) 5, 27, 297, 339, 485, 566, 756
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.