Rroxscaffold_105G00447170

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000105
OG0000295
Physical Location & Seq
Reverse (-)
54588 .. 55374
787 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_105G00447170.1

Sequence Viewer

Length: 240 bp
ATGGTGGTGACGGGTGACGGAGAATTAGGGTTCGATTCCGGAGAGGGAGCCCGAGAAACGGCTACCACATCCAAGGAAGGCAGCAGGCGCGCAAATTACCCAATCCCGACACGGGGAGTCTCAACCATAAACGATGCCGACCAGGGATCGGCGGATGTTACTTTTAGGACTCCGCCGCACCTTATGAGAAATCAAAGTTTTTGGGTTCCGGGGGAGTATGGTCGCAAGGCTGAAACTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

79

Amino Acids

8.53

Weight (kDa)

5.24

Isoelectric Point (pI)

23.88

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000295)

Species Orthologous Gene IDs
pyrus_communis pycom2132g00010
rosa_roxburghii Rroxscaffold_101G00451080 Rroxscaffold_103G00450520 Rroxscaffold_105G00447130 Rroxscaffold_105G00447170 Rroxscaffold_107G00442620 Rroxscaffold_107G00442680 Rroxscaffold_107G00442720 Rroxscaffold_109G00451490 Rroxscaffold_111G00451540 Rroxscaffold_117G00451730 Rroxscaffold_119G00451820 Rroxscaffold_124G00451940 Rroxscaffold_129G00452080 Rroxscaffold_130G00452090 Rroxscaffold_133G00452140 Rroxscaffold_137G00452170 Rroxscaffold_139G00452220 Rroxscaffold_13G00448650 Rroxscaffold_13G00448660 Rroxscaffold_144G00452230 Rroxscaffold_147G00452260 Rroxscaffold_15G00447540 Rroxscaffold_15G00447550 Rroxscaffold_15G00447560 Rroxscaffold_16G00446230 Rroxscaffold_17G00435400 Rroxscaffold_17G00435490 Rroxscaffold_17G00435550 Rroxscaffold_17G00435630 Rroxscaffold_17G00435670 Rroxscaffold_17G00435740 Rroxscaffold_17G00435750 Rroxscaffold_17G00435820 Rroxscaffold_17G00435830 Rroxscaffold_17G00435890 Rroxscaffold_17G00435900 Rroxscaffold_1G00000120 Rroxscaffold_1G00000140 Rroxscaffold_1G00000170 Rroxscaffold_20G00445080 Rroxscaffold_21G00439530 Rroxscaffold_21G00439610 Rroxscaffold_22G00439860 Rroxscaffold_22G00439960 Rroxscaffold_24G00445010 Rroxscaffold_26G00447780 Rroxscaffold_27G00446620 Rroxscaffold_27G00446630 Rroxscaffold_28G00446940 Rroxscaffold_28G00446950 Rroxscaffold_28G00446960 Rroxscaffold_29G00441540 Rroxscaffold_29G00441550 Rroxscaffold_32G00442730 Rroxscaffold_32G00442850 Rroxscaffold_33G00439730 Rroxscaffold_36G00440150 Rroxscaffold_37G00445150 Rroxscaffold_38G00444610 Rroxscaffold_38G00444640 Rroxscaffold_39G00448190 Rroxscaffold_39G00448240 Rroxscaffold_39G00448250 Rroxscaffold_40G00447690 Rroxscaffold_42G00450450 Rroxscaffold_44G00440620 Rroxscaffold_44G00440650 Rroxscaffold_45G00438830 Rroxscaffold_45G00438970 Rroxscaffold_46G00448710 Rroxscaffold_46G00448750 Rroxscaffold_47G00444030 Rroxscaffold_51G00447880 Rroxscaffold_52G00439410 Rroxscaffold_55G00450110 Rroxscaffold_56G00450960 Rroxscaffold_57G00443090 Rroxscaffold_57G00443100 Rroxscaffold_58G00448990 Rroxscaffold_58G00449030 Rroxscaffold_58G00449040 Rroxscaffold_59G00442100 Rroxscaffold_59G00442110 Rroxscaffold_59G00442120 Rroxscaffold_59G00442130 Rroxscaffold_60G00448420 Rroxscaffold_61G00449960 Rroxscaffold_61G00449980 Rroxscaffold_62G00437950 Rroxscaffold_65G00445320 Rroxscaffold_65G00445330 Rroxscaffold_67G00448110 Rroxscaffold_67G00448180 Rroxscaffold_6G00387750 Rroxscaffold_70G00446410 Rroxscaffold_73G00439300 Rroxscaffold_74G00442880 Rroxscaffold_74G00442940 Rroxscaffold_75G00447420 Rroxscaffold_76G00448560 Rroxscaffold_77G00449170 Rroxscaffold_77G00449180 Rroxscaffold_77G00449190 Rroxscaffold_77G00449200 Rroxscaffold_81G00450460 Rroxscaffold_81G00450470 Rroxscaffold_82G00450790 Rroxscaffold_82G00450800 Rroxscaffold_84G00451000 Rroxscaffold_84G00451010 Rroxscaffold_90G00448800 Rroxscaffold_91G00442990 Rroxscaffold_91G00443020 Rroxscaffold_91G00443030 Rroxscaffold_91G00443050 Rroxscaffold_92G00446530 Rroxscaffold_93G00440920 Rroxscaffold_95G00449220 Rroxscaffold_96G00449120 Rroxscaffold_96G00449130 Rroxscaffold_96G00449140 Rroxscaffold_98G00451330

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 90
AccIII TCCGGA 1 cut(s) 38
AciI CCGC 3 cut(s) 152, 173, 176
AclWI GGATC 1 cut(s) 154
AfiI CCNNNNNNNGG 4 cut(s) 58, 112, 113, 148
AjnI CCWGG 1 cut(s) 141
Alw26I GTCTC 1 cut(s) 124
AlwI GGATC 1 cut(s) 154
Ama87I CYCGRG 1 cut(s) 51
Aor13HI TCCGGA 1 cut(s) 38
ApeKI GCWGC 1 cut(s) 81
AspLEI GCGC 2 cut(s) 90, 92
AsuC2I CCSGG 1 cut(s) 210
AsuHPI GGTGA 2 cut(s) 19, 26
AvaI CYCGRG 1 cut(s) 51
BanII GRGCYC 1 cut(s) 52
BbvI GCAGC 1 cut(s) 93
BceAI ACGGC 1 cut(s) 75
BciT130I CCWGG 1 cut(s) 143
BcnI CCSGG 1 cut(s) 210
BcoDI GTCTC 1 cut(s) 124
BisI GCNGC 2 cut(s) 82, 176
BlsI GCNGC 2 cut(s) 83, 177
Bme1390I CCNGG 2 cut(s) 143, 210
BmeT110I CYCGRG 1 cut(s) 51
BmiI GGNNCC 2 cut(s) 49, 207
BmrFI CCNGG 2 cut(s) 143, 210
BmsI GCATC 1 cut(s) 124
BpuMI CCSGG 1 cut(s) 210
BsaJI CCNNGG 3 cut(s) 72, 142, 209
BsaWI WCCGGW 1 cut(s) 38
Bsc4I CCNNNNNNNGG 4 cut(s) 58, 112, 113, 148
BseAI TCCGGA 1 cut(s) 38
BseBI CCWGG 1 cut(s) 143
BseDI CCNNGG 3 cut(s) 72, 142, 209
BseGI GGATG 2 cut(s) 68, 160
BseLI CCNNNNNNNGG 4 cut(s) 58, 112, 113, 148
BsePI GCGCGC 1 cut(s) 88
BseXI GCAGC 1 cut(s) 93
Bsh1236I CGCG 1 cut(s) 90
BsiHKCI CYCGRG 1 cut(s) 51
BsiSI CCGG 2 cut(s) 39, 209
BslI CCNNNNNNNGG 4 cut(s) 58, 112, 113, 148
BsmAI GTCTC 1 cut(s) 124
BsoBI CYCGRG 1 cut(s) 51
Bsp1286I GDGCHC 1 cut(s) 52
Bsp13I TCCGGA 1 cut(s) 38
Bsp143I GATC 1 cut(s) 146
BspACI CCGC 3 cut(s) 152, 173, 176
BspEI TCCGGA 1 cut(s) 38
BspFNI CGCG 1 cut(s) 90
BspLI GGNNCC 2 cut(s) 49, 207
BspPI GGATC 1 cut(s) 154
BssECI CCNNGG 3 cut(s) 72, 142, 209
BssHII GCGCGC 1 cut(s) 88
BssMI GATC 1 cut(s) 146
BssT1I CCWWGG 1 cut(s) 72
Bst2UI CCWGG 1 cut(s) 143
BstC8I GCNNGC 2 cut(s) 86, 90
BstF5I GGATG 2 cut(s) 68, 160
BstFNI CGCG 1 cut(s) 90
BstHHI GCGC 2 cut(s) 90, 92
BstKTI GATC 1 cut(s) 149
BstMAI GTCTC 1 cut(s) 124
BstMBI GATC 1 cut(s) 146
BstMWI GCNNNNNNNGC 1 cut(s) 87
BstNI CCWGG 1 cut(s) 143
BstSCI CCNGG 2 cut(s) 141, 208
BstUI CGCG 1 cut(s) 90
BstV1I GCAGC 1 cut(s) 93
BtsCI GGATG 2 cut(s) 68, 160
Cac8I GCNNGC 2 cut(s) 86, 90
CfoI GCGC 2 cut(s) 90, 92
CviJI RGCY 3 cut(s) 50, 62, 230
CviKI_1 RGCY 3 cut(s) 50, 62, 230
DpnI GATC 1 cut(s) 148
DpnII GATC 1 cut(s) 146
EciI GGCGGA 2 cut(s) 162, 167
Eco130I CCWWGG 1 cut(s) 72
Eco24I GRGCYC 1 cut(s) 52
Eco88I CYCGRG 1 cut(s) 51
EcoRII CCWGG 1 cut(s) 141
EcoT14I CCWWGG 1 cut(s) 72
EcoT38I GRGCYC 1 cut(s) 52
ErhI CCWWGG 1 cut(s) 72
FaiI YATR 3 cut(s) 128, 185, 219
Fnu4HI GCNGC 2 cut(s) 82, 176
FokI GGATG 2 cut(s) 55, 167
FriOI GRGCYC 1 cut(s) 52
Fsp4HI GCNGC 2 cut(s) 82, 176
GlaI GCGC 2 cut(s) 89, 91
GluI GCNGC 2 cut(s) 82, 176
HapII CCGG 2 cut(s) 39, 209
HhaI GCGC 2 cut(s) 90, 92
Hin6I GCGC 2 cut(s) 88, 90
HinP1I GCGC 2 cut(s) 88, 90
HinfI GANTC 3 cut(s) 35, 117, 169
HpaII CCGG 2 cut(s) 39, 209
HphI GGTGA 2 cut(s) 19, 26
Hpy188III TCNNGA 2 cut(s) 39, 106
HpyAV CCTTC 1 cut(s) 71
HpyF10VI GCNNNNNNNGC 1 cut(s) 87
HspAI GCGC 2 cut(s) 88, 90
Kpn2I TCCGGA 1 cut(s) 38
Kzo9I GATC 1 cut(s) 146
LmnI GCTCC 1 cut(s) 47
LpnPI CCDG 5 cut(s) 52, 70, 128, 155, 222
Lsp1109I GCAGC 1 cut(s) 93
LweI GCATC 1 cut(s) 124
MaeIII GTNAC 3 cut(s) 7, 14, 157
MalI GATC 1 cut(s) 148
MboI GATC 1 cut(s) 146
MhlI GDGCHC 1 cut(s) 52
MluCI AATT 2 cut(s) 23, 94
MlyI GAGTC 2 cut(s) 126, 163
MnlI CCTC 1 cut(s) 37
MroI TCCGGA 1 cut(s) 38
MseI TTAA 1 cut(s) 238
MspI CCGG 2 cut(s) 39, 209
MspR9I CCNGG 2 cut(s) 143, 210
MvaI CCWGG 1 cut(s) 143
MvnI CGCG 1 cut(s) 90
MwoI GCNNNNNNNGC 1 cut(s) 87
NciI CCSGG 1 cut(s) 210
NdeII GATC 1 cut(s) 146
NlaIV GGNNCC 2 cut(s) 49, 207
NmuCI GTSAC 2 cut(s) 7, 14
PauI GCGCGC 1 cut(s) 88
PfeI GAWTC 1 cut(s) 35
PkrI GCNGC 2 cut(s) 83, 177
PleI GAGTC 2 cut(s) 125, 163
PpsI GAGTC 2 cut(s) 125, 163
Psp6I CCWGG 1 cut(s) 141
PspGI CCWGG 1 cut(s) 141
PspN4I GGNNCC 2 cut(s) 49, 207
PteI GCGCGC 1 cut(s) 88
SaqAI TTAA 1 cut(s) 238
SatI GCNGC 2 cut(s) 82, 176
Sau3AI GATC 1 cut(s) 146
SchI GAGTC 2 cut(s) 126, 163
ScrFI CCNGG 2 cut(s) 143, 210
SduI GDGCHC 1 cut(s) 52
SetI ASST 1 cut(s) 183
SfaNI GCATC 1 cut(s) 124
Sse9I AATT 2 cut(s) 23, 94
SsiI CCGC 3 cut(s) 152, 173, 176
StyD4I CCNGG 2 cut(s) 141, 208
StyI CCWWGG 1 cut(s) 72
TaqI TCGA 1 cut(s) 33
TasI AATT 2 cut(s) 23, 94
TauI GCSGC 1 cut(s) 178
TfiI GAWTC 1 cut(s) 35
Tru1I TTAA 1 cut(s) 238
Tru9I TTAA 1 cut(s) 238
TseFI GTSAC 2 cut(s) 7, 14
TseI GCWGC 1 cut(s) 81
Tsp45I GTSAC 2 cut(s) 7, 14
TspGWI ACGGA 1 cut(s) 33
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.