Rroxscaffold_92G00446530

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000092
OG0000295
Physical Location & Seq
Reverse (-)
60349 .. 61593
1245 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_92G00446530.1

Sequence Viewer

Length: 309 bp
ATGTACGACCGCTGTGCTCGTTGCAGGTCTCCCCTACGCGGTGCCAGCGTTGTCAAAGGAATGCTACCTGCATTTGCCAAGGATGTTTTCATTAATCAAGAACGAAAGTTGGGGGCTCGAAGACGATCAGATACCGTCCTAGTCTCAACCATAAACGATGCCGACCAGGGATCGGCGGATGTTACTTTTAGGACTCCGCCGCACCTTATGAGAAATCAAAGTTTTTGGGTTCCGGGGAGTATGGTCGCAAGGCTGAAACTTAAAGGAATTGACGGAAGGGCACCACCAGGAGTGGAGCCTGCGGCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

102

Amino Acids

11.18

Weight (kDa)

10.54

Isoelectric Point (pI)

47.94

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000295)

Species Orthologous Gene IDs
pyrus_communis pycom2132g00010
rosa_roxburghii Rroxscaffold_101G00451080 Rroxscaffold_103G00450520 Rroxscaffold_105G00447130 Rroxscaffold_105G00447170 Rroxscaffold_107G00442620 Rroxscaffold_107G00442680 Rroxscaffold_107G00442720 Rroxscaffold_109G00451490 Rroxscaffold_111G00451540 Rroxscaffold_117G00451730 Rroxscaffold_119G00451820 Rroxscaffold_124G00451940 Rroxscaffold_129G00452080 Rroxscaffold_130G00452090 Rroxscaffold_133G00452140 Rroxscaffold_137G00452170 Rroxscaffold_139G00452220 Rroxscaffold_13G00448650 Rroxscaffold_13G00448660 Rroxscaffold_144G00452230 Rroxscaffold_147G00452260 Rroxscaffold_15G00447540 Rroxscaffold_15G00447550 Rroxscaffold_15G00447560 Rroxscaffold_16G00446230 Rroxscaffold_17G00435400 Rroxscaffold_17G00435490 Rroxscaffold_17G00435550 Rroxscaffold_17G00435630 Rroxscaffold_17G00435670 Rroxscaffold_17G00435740 Rroxscaffold_17G00435750 Rroxscaffold_17G00435820 Rroxscaffold_17G00435830 Rroxscaffold_17G00435890 Rroxscaffold_17G00435900 Rroxscaffold_1G00000120 Rroxscaffold_1G00000140 Rroxscaffold_1G00000170 Rroxscaffold_20G00445080 Rroxscaffold_21G00439530 Rroxscaffold_21G00439610 Rroxscaffold_22G00439860 Rroxscaffold_22G00439960 Rroxscaffold_24G00445010 Rroxscaffold_26G00447780 Rroxscaffold_27G00446620 Rroxscaffold_27G00446630 Rroxscaffold_28G00446940 Rroxscaffold_28G00446950 Rroxscaffold_28G00446960 Rroxscaffold_29G00441540 Rroxscaffold_29G00441550 Rroxscaffold_32G00442730 Rroxscaffold_32G00442850 Rroxscaffold_33G00439730 Rroxscaffold_36G00440150 Rroxscaffold_37G00445150 Rroxscaffold_38G00444610 Rroxscaffold_38G00444640 Rroxscaffold_39G00448190 Rroxscaffold_39G00448240 Rroxscaffold_39G00448250 Rroxscaffold_40G00447690 Rroxscaffold_42G00450450 Rroxscaffold_44G00440620 Rroxscaffold_44G00440650 Rroxscaffold_45G00438830 Rroxscaffold_45G00438970 Rroxscaffold_46G00448710 Rroxscaffold_46G00448750 Rroxscaffold_47G00444030 Rroxscaffold_51G00447880 Rroxscaffold_52G00439410 Rroxscaffold_55G00450110 Rroxscaffold_56G00450960 Rroxscaffold_57G00443090 Rroxscaffold_57G00443100 Rroxscaffold_58G00448990 Rroxscaffold_58G00449030 Rroxscaffold_58G00449040 Rroxscaffold_59G00442100 Rroxscaffold_59G00442110 Rroxscaffold_59G00442120 Rroxscaffold_59G00442130 Rroxscaffold_60G00448420 Rroxscaffold_61G00449960 Rroxscaffold_61G00449980 Rroxscaffold_62G00437950 Rroxscaffold_65G00445320 Rroxscaffold_65G00445330 Rroxscaffold_67G00448110 Rroxscaffold_67G00448180 Rroxscaffold_6G00387750 Rroxscaffold_70G00446410 Rroxscaffold_73G00439300 Rroxscaffold_74G00442880 Rroxscaffold_74G00442940 Rroxscaffold_75G00447420 Rroxscaffold_76G00448560 Rroxscaffold_77G00449170 Rroxscaffold_77G00449180 Rroxscaffold_77G00449190 Rroxscaffold_77G00449200 Rroxscaffold_81G00450460 Rroxscaffold_81G00450470 Rroxscaffold_82G00450790 Rroxscaffold_82G00450800 Rroxscaffold_84G00451000 Rroxscaffold_84G00451010 Rroxscaffold_90G00448800 Rroxscaffold_91G00442990 Rroxscaffold_91G00443020 Rroxscaffold_91G00443030 Rroxscaffold_91G00443050 Rroxscaffold_92G00446530 Rroxscaffold_93G00440920 Rroxscaffold_95G00449220 Rroxscaffold_96G00449120 Rroxscaffold_96G00449130 Rroxscaffold_96G00449140 Rroxscaffold_98G00451330

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 2 cut(s) 15, 76
AccB1I GGYRCC 2 cut(s) 41, 280
AccII CGCG 1 cut(s) 39
AciI CCGC 6 cut(s) 10, 39, 176, 197, 200, 302
AclWI GGATC 1 cut(s) 178
AfaI GTAC 1 cut(s) 5
AfiI CCNNNNNNNGG 2 cut(s) 38, 172
AjnI CCWGG 2 cut(s) 165, 286
AjuI GAANNNNNNNTTGG 2 cut(s) 71, 103
Alw21I GWGCWC 1 cut(s) 19
Alw26I GTCTC 2 cut(s) 33, 148
AlwI GGATC 1 cut(s) 178
AseI ATTAAT 1 cut(s) 93
AsuC2I CCSGG 1 cut(s) 234
BaeGI GKGCMC 1 cut(s) 283
BanI GGYRCC 2 cut(s) 41, 280
BanII GRGCYC 1 cut(s) 118
BbsI GAAGAC 1 cut(s) 127
Bbv12I GWGCWC 1 cut(s) 19
BcgI CGANNNNNNTGC 1 cut(s) 30
BciT130I CCWGG 2 cut(s) 167, 288
BcnI CCSGG 1 cut(s) 234
BcoDI GTCTC 2 cut(s) 33, 148
BfaI CTAG 1 cut(s) 140
BfuAI ACCTGC 2 cut(s) 15, 76
BisI GCNGC 2 cut(s) 200, 303
BlsI GCNGC 2 cut(s) 201, 304
Bme1390I CCNGG 3 cut(s) 167, 234, 288
BmiI GGNNCC 4 cut(s) 43, 231, 282, 297
BmrFI CCNGG 3 cut(s) 167, 234, 288
BmsI GCATC 1 cut(s) 148
BpiI GAAGAC 1 cut(s) 127
BpuMI CCSGG 1 cut(s) 234
BsaI GGTCTC 1 cut(s) 33
BsaJI CCNNGG 3 cut(s) 78, 166, 233
Bsc4I CCNNNNNNNGG 2 cut(s) 38, 172
BseBI CCWGG 2 cut(s) 167, 288
BseDI CCNNGG 3 cut(s) 78, 166, 233
BseGI GGATG 2 cut(s) 88, 184
BseLI CCNNNNNNNGG 2 cut(s) 38, 172
BseSI GKGCMC 1 cut(s) 283
Bsh1236I CGCG 1 cut(s) 39
Bsh1285I CGRYCG 1 cut(s) 10
BshNI GGYRCC 2 cut(s) 41, 280
BsiEI CGRYCG 1 cut(s) 10
BsiHKAI GWGCWC 1 cut(s) 19
BsiSI CCGG 1 cut(s) 233
BslI CCNNNNNNNGG 2 cut(s) 38, 172
BsmAI GTCTC 2 cut(s) 33, 148
BsmI GAATGC 1 cut(s) 66
Bso31I GGTCTC 1 cut(s) 33
Bsp1286I GDGCHC 3 cut(s) 19, 118, 283
Bsp143I GATC 2 cut(s) 125, 170
BspACI CCGC 6 cut(s) 10, 39, 176, 197, 200, 302
BspFNI CGCG 1 cut(s) 39
BspLI GGNNCC 4 cut(s) 43, 231, 282, 297
BspMI ACCTGC 2 cut(s) 15, 76
BspPI GGATC 1 cut(s) 178
BspT107I GGYRCC 2 cut(s) 41, 280
BspTNI GGTCTC 1 cut(s) 33
BssECI CCNNGG 3 cut(s) 78, 166, 233
BssMI GATC 2 cut(s) 125, 170
BssT1I CCWWGG 1 cut(s) 78
Bst2UI CCWGG 2 cut(s) 167, 288
Bst4CI ACNGT 1 cut(s) 136
BstC8I GCNNGC 2 cut(s) 46, 300
BstF5I GGATG 2 cut(s) 88, 184
BstFNI CGCG 1 cut(s) 39
BstKTI GATC 2 cut(s) 128, 173
BstMAI GTCTC 2 cut(s) 33, 148
BstMBI GATC 2 cut(s) 125, 170
BstMCI CGRYCG 1 cut(s) 10
BstMWI GCNNNNNNNGC 1 cut(s) 45
BstNI CCWGG 2 cut(s) 167, 288
BstSCI CCNGG 3 cut(s) 165, 232, 286
BstSLI GKGCMC 1 cut(s) 283
BstUI CGCG 1 cut(s) 39
BstV2I GAAGAC 1 cut(s) 127
BtsCI GGATG 2 cut(s) 88, 184
BveI ACCTGC 2 cut(s) 15, 76
Cac8I GCNNGC 2 cut(s) 46, 300
Csp6I GTAC 1 cut(s) 4
CviJI RGCY 4 cut(s) 116, 253, 298, 305
CviKI_1 RGCY 4 cut(s) 116, 253, 298, 305
CviQI GTAC 1 cut(s) 4
DpnI GATC 2 cut(s) 127, 172
DpnII GATC 2 cut(s) 125, 170
EciI GGCGGA 2 cut(s) 186, 191
Eco130I CCWWGG 1 cut(s) 78
Eco24I GRGCYC 1 cut(s) 118
Eco31I GGTCTC 1 cut(s) 33
EcoRII CCWGG 2 cut(s) 165, 286
EcoT14I CCWWGG 1 cut(s) 78
EcoT38I GRGCYC 1 cut(s) 118
ErhI CCWWGG 1 cut(s) 78
FaiI YATR 3 cut(s) 152, 209, 242
Fnu4HI GCNGC 2 cut(s) 200, 303
FokI GGATG 2 cut(s) 95, 191
FriOI GRGCYC 1 cut(s) 118
Fsp4HI GCNGC 2 cut(s) 200, 303
FspBI CTAG 1 cut(s) 140
GluI GCNGC 2 cut(s) 200, 303
HapII CCGG 1 cut(s) 233
HinfI GANTC 1 cut(s) 193
HpaII CCGG 1 cut(s) 233
Hpy188I TCNGA 1 cut(s) 130
Hpy188III TCNNGA 1 cut(s) 98
HpyAV CCTTC 1 cut(s) 270
HpyCH4III ACNGT 1 cut(s) 136
HpyCH4V TGCA 2 cut(s) 24, 71
HpyF10VI GCNNNNNNNGC 1 cut(s) 45
Kzo9I GATC 2 cut(s) 125, 170
LmnI GCTCC 1 cut(s) 295
LpnPI CCDG 8 cut(s) 10, 58, 81, 152, 179, 246, 273, 300
LweI GCATC 1 cut(s) 148
MaeI CTAG 1 cut(s) 140
MaeIII GTNAC 1 cut(s) 181
MalI GATC 2 cut(s) 127, 172
MboI GATC 2 cut(s) 125, 170
MboII GAAGA 1 cut(s) 132
MhlI GDGCHC 3 cut(s) 19, 118, 283
MluCI AATT 1 cut(s) 267
MlyI GAGTC 1 cut(s) 187
MseI TTAA 3 cut(s) 93, 261, 307
MspA1I CMGCKG 1 cut(s) 12
MspI CCGG 1 cut(s) 233
MspR9I CCNGG 3 cut(s) 167, 234, 288
Mva1269I GAATGC 1 cut(s) 66
MvaI CCWGG 2 cut(s) 167, 288
MvnI CGCG 1 cut(s) 39
MwoI GCNNNNNNNGC 1 cut(s) 45
NciI CCSGG 1 cut(s) 234
NdeII GATC 2 cut(s) 125, 170
NlaIV GGNNCC 4 cut(s) 43, 231, 282, 297
PctI GAATGC 1 cut(s) 66
PkrI GCNGC 2 cut(s) 201, 304
PleI GAGTC 1 cut(s) 187
PpsI GAGTC 1 cut(s) 187
PshBI ATTAAT 1 cut(s) 93
Psp6I CCWGG 2 cut(s) 165, 286
PspGI CCWGG 2 cut(s) 165, 286
PspN4I GGNNCC 4 cut(s) 43, 231, 282, 297
RsaI GTAC 1 cut(s) 5
RsaNI GTAC 1 cut(s) 4
SaqAI TTAA 3 cut(s) 93, 261, 307
SatI GCNGC 2 cut(s) 200, 303
Sau3AI GATC 2 cut(s) 125, 170
SchI GAGTC 1 cut(s) 187
ScrFI CCNGG 3 cut(s) 167, 234, 288
SduI GDGCHC 3 cut(s) 19, 118, 283
SetI ASST 3 cut(s) 29, 70, 207
SfaNI GCATC 1 cut(s) 148
Sse9I AATT 1 cut(s) 267
SsiI CCGC 6 cut(s) 10, 39, 176, 197, 200, 302
SspMI CTAG 1 cut(s) 140
StyD4I CCNGG 3 cut(s) 165, 232, 286
StyI CCWWGG 1 cut(s) 78
TaaI ACNGT 1 cut(s) 136
TaqI TCGA 1 cut(s) 118
TasI AATT 1 cut(s) 267
TauI GCSGC 2 cut(s) 202, 305
Tru1I TTAA 3 cut(s) 93, 261, 307
Tru9I TTAA 3 cut(s) 93, 261, 307
TspDTI ATGAA 1 cut(s) 79
TspGWI ACGGA 1 cut(s) 288
VspI ATTAAT 1 cut(s) 93
XspI CTAG 1 cut(s) 140
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.