Rroxscaffold_58G00449030

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000058
OG0000295
Physical Location & Seq
Reverse (-)
32514 .. 33717
1204 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_58G00449030.1

Sequence Viewer

Length: 306 bp
ATGTACGACCGCTGTGCTCGTTGCAGGGTCTCCCTACGCGGTGCCAGCCGTTGTCAAAGGAATGCTACCTGGTTGATCCCGCCAGTAGTCATATGCTTGTCTCAAAGATTAAGCCATGCATGTGATGTTTTCATTAATCAAGAACGAAAGTTGGGGGCTCGAAGACGATCAGATACCGTCCTAGTCTCAACCATAAACGATGCCGACCAGGGATCGGCGGATGTTACTTTTAGGACTCCGCCGCACCTTATGAGAAATCAAAGTTTTTGGGTTCCGGGGGAGTATGGTCGCAAGGCTGAAACTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

101

Amino Acids

11.51

Weight (kDa)

9.81

Isoelectric Point (pI)

47.63

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000295)

Species Orthologous Gene IDs
pyrus_communis pycom2132g00010
rosa_roxburghii Rroxscaffold_101G00451080 Rroxscaffold_103G00450520 Rroxscaffold_105G00447130 Rroxscaffold_105G00447170 Rroxscaffold_107G00442620 Rroxscaffold_107G00442680 Rroxscaffold_107G00442720 Rroxscaffold_109G00451490 Rroxscaffold_111G00451540 Rroxscaffold_117G00451730 Rroxscaffold_119G00451820 Rroxscaffold_124G00451940 Rroxscaffold_129G00452080 Rroxscaffold_130G00452090 Rroxscaffold_133G00452140 Rroxscaffold_137G00452170 Rroxscaffold_139G00452220 Rroxscaffold_13G00448650 Rroxscaffold_13G00448660 Rroxscaffold_144G00452230 Rroxscaffold_147G00452260 Rroxscaffold_15G00447540 Rroxscaffold_15G00447550 Rroxscaffold_15G00447560 Rroxscaffold_16G00446230 Rroxscaffold_17G00435400 Rroxscaffold_17G00435490 Rroxscaffold_17G00435550 Rroxscaffold_17G00435630 Rroxscaffold_17G00435670 Rroxscaffold_17G00435740 Rroxscaffold_17G00435750 Rroxscaffold_17G00435820 Rroxscaffold_17G00435830 Rroxscaffold_17G00435890 Rroxscaffold_17G00435900 Rroxscaffold_1G00000120 Rroxscaffold_1G00000140 Rroxscaffold_1G00000170 Rroxscaffold_20G00445080 Rroxscaffold_21G00439530 Rroxscaffold_21G00439610 Rroxscaffold_22G00439860 Rroxscaffold_22G00439960 Rroxscaffold_24G00445010 Rroxscaffold_26G00447780 Rroxscaffold_27G00446620 Rroxscaffold_27G00446630 Rroxscaffold_28G00446940 Rroxscaffold_28G00446950 Rroxscaffold_28G00446960 Rroxscaffold_29G00441540 Rroxscaffold_29G00441550 Rroxscaffold_32G00442730 Rroxscaffold_32G00442850 Rroxscaffold_33G00439730 Rroxscaffold_36G00440150 Rroxscaffold_37G00445150 Rroxscaffold_38G00444610 Rroxscaffold_38G00444640 Rroxscaffold_39G00448190 Rroxscaffold_39G00448240 Rroxscaffold_39G00448250 Rroxscaffold_40G00447690 Rroxscaffold_42G00450450 Rroxscaffold_44G00440620 Rroxscaffold_44G00440650 Rroxscaffold_45G00438830 Rroxscaffold_45G00438970 Rroxscaffold_46G00448710 Rroxscaffold_46G00448750 Rroxscaffold_47G00444030 Rroxscaffold_51G00447880 Rroxscaffold_52G00439410 Rroxscaffold_55G00450110 Rroxscaffold_56G00450960 Rroxscaffold_57G00443090 Rroxscaffold_57G00443100 Rroxscaffold_58G00448990 Rroxscaffold_58G00449030 Rroxscaffold_58G00449040 Rroxscaffold_59G00442100 Rroxscaffold_59G00442110 Rroxscaffold_59G00442120 Rroxscaffold_59G00442130 Rroxscaffold_60G00448420 Rroxscaffold_61G00449960 Rroxscaffold_61G00449980 Rroxscaffold_62G00437950 Rroxscaffold_65G00445320 Rroxscaffold_65G00445330 Rroxscaffold_67G00448110 Rroxscaffold_67G00448180 Rroxscaffold_6G00387750 Rroxscaffold_70G00446410 Rroxscaffold_73G00439300 Rroxscaffold_74G00442880 Rroxscaffold_74G00442940 Rroxscaffold_75G00447420 Rroxscaffold_76G00448560 Rroxscaffold_77G00449170 Rroxscaffold_77G00449180 Rroxscaffold_77G00449190 Rroxscaffold_77G00449200 Rroxscaffold_81G00450460 Rroxscaffold_81G00450470 Rroxscaffold_82G00450790 Rroxscaffold_82G00450800 Rroxscaffold_84G00451000 Rroxscaffold_84G00451010 Rroxscaffold_90G00448800 Rroxscaffold_91G00442990 Rroxscaffold_91G00443020 Rroxscaffold_91G00443030 Rroxscaffold_91G00443050 Rroxscaffold_92G00446530 Rroxscaffold_93G00440920 Rroxscaffold_95G00449220 Rroxscaffold_96G00449120 Rroxscaffold_96G00449130 Rroxscaffold_96G00449140 Rroxscaffold_98G00451330

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 41
AccII CGCG 1 cut(s) 39
AciI CCGC 6 cut(s) 10, 39, 80, 218, 239, 242
AclWI GGATC 2 cut(s) 70, 220
AfaI GTAC 1 cut(s) 5
AfiI CCNNNNNNNGG 1 cut(s) 214
AjnI CCWGG 2 cut(s) 68, 207
Alw21I GWGCWC 1 cut(s) 19
Alw26I GTCTC 3 cut(s) 34, 105, 190
AlwI GGATC 2 cut(s) 70, 220
AseI ATTAAT 1 cut(s) 135
AsuC2I CCSGG 1 cut(s) 276
BanI GGYRCC 1 cut(s) 41
BanII GRGCYC 1 cut(s) 160
BbsI GAAGAC 1 cut(s) 169
Bbv12I GWGCWC 1 cut(s) 19
BceAI ACGGC 1 cut(s) 33
BcgI CGANNNNNNTGC 1 cut(s) 30
BciT130I CCWGG 2 cut(s) 70, 209
BcnI CCSGG 1 cut(s) 276
BcoDI GTCTC 3 cut(s) 34, 105, 190
BfaI CTAG 1 cut(s) 182
BisI GCNGC 1 cut(s) 242
BlsI GCNGC 1 cut(s) 243
Bme1390I CCNGG 3 cut(s) 70, 209, 276
BmiI GGNNCC 2 cut(s) 43, 273
BmrFI CCNGG 3 cut(s) 70, 209, 276
BmsI GCATC 1 cut(s) 190
BpiI GAAGAC 1 cut(s) 169
BpuMI CCSGG 1 cut(s) 276
BsaI GGTCTC 1 cut(s) 34
BsaJI CCNNGG 2 cut(s) 208, 275
Bsc4I CCNNNNNNNGG 1 cut(s) 214
Bse1I ACTGG 1 cut(s) 83
BseBI CCWGG 2 cut(s) 70, 209
BseDI CCNNGG 2 cut(s) 208, 275
BseGI GGATG 1 cut(s) 226
BseLI CCNNNNNNNGG 1 cut(s) 214
BseNI ACTGG 1 cut(s) 83
Bsh1236I CGCG 1 cut(s) 39
Bsh1285I CGRYCG 1 cut(s) 10
BshNI GGYRCC 1 cut(s) 41
BsiEI CGRYCG 1 cut(s) 10
BsiHKAI GWGCWC 1 cut(s) 19
BsiSI CCGG 1 cut(s) 275
BslI CCNNNNNNNGG 1 cut(s) 214
BsmAI GTCTC 3 cut(s) 34, 105, 190
BsmI GAATGC 1 cut(s) 67
Bso31I GGTCTC 1 cut(s) 34
Bsp1286I GDGCHC 2 cut(s) 19, 160
Bsp143I GATC 3 cut(s) 75, 167, 212
BspACI CCGC 6 cut(s) 10, 39, 80, 218, 239, 242
BspFNI CGCG 1 cut(s) 39
BspLI GGNNCC 2 cut(s) 43, 273
BspPI GGATC 2 cut(s) 70, 220
BspT107I GGYRCC 1 cut(s) 41
BspTNI GGTCTC 1 cut(s) 34
BsrI ACTGG 1 cut(s) 83
BssECI CCNNGG 2 cut(s) 208, 275
BssMI GATC 3 cut(s) 75, 167, 212
Bst2UI CCWGG 2 cut(s) 70, 209
Bst4CI ACNGT 1 cut(s) 178
BstC8I GCNNGC 1 cut(s) 46
BstF5I GGATG 1 cut(s) 226
BstFNI CGCG 1 cut(s) 39
BstKTI GATC 3 cut(s) 78, 170, 215
BstMAI GTCTC 3 cut(s) 34, 105, 190
BstMBI GATC 3 cut(s) 75, 167, 212
BstMCI CGRYCG 1 cut(s) 10
BstMWI GCNNNNNNNGC 1 cut(s) 45
BstNI CCWGG 2 cut(s) 70, 209
BstNSI RCATGY 1 cut(s) 123
BstSCI CCNGG 3 cut(s) 68, 207, 274
BstUI CGCG 1 cut(s) 39
BstV2I GAAGAC 1 cut(s) 169
BtsCI GGATG 1 cut(s) 226
Cac8I GCNNGC 1 cut(s) 46
CsiI ACCWGGT 1 cut(s) 68
Csp6I GTAC 1 cut(s) 4
CviAII CATG 2 cut(s) 116, 120
CviJI RGCY 4 cut(s) 48, 114, 158, 296
CviKI_1 RGCY 4 cut(s) 48, 114, 158, 296
CviQI GTAC 1 cut(s) 4
DpnI GATC 3 cut(s) 77, 169, 214
DpnII GATC 3 cut(s) 75, 167, 212
EciI GGCGGA 2 cut(s) 228, 233
Eco24I GRGCYC 1 cut(s) 160
Eco31I GGTCTC 1 cut(s) 34
EcoRII CCWGG 2 cut(s) 68, 207
EcoT22I ATGCAT 1 cut(s) 121
EcoT38I GRGCYC 1 cut(s) 160
FaeI CATG 2 cut(s) 119, 123
FaiI YATR 7 cut(s) 92, 94, 117, 121, 194, 251, 285
FatI CATG 2 cut(s) 115, 119
FauI CCCGC 1 cut(s) 87
FauNDI CATATG 1 cut(s) 92
Fnu4HI GCNGC 1 cut(s) 242
FokI GGATG 1 cut(s) 233
FriOI GRGCYC 1 cut(s) 160
Fsp4HI GCNGC 1 cut(s) 242
FspBI CTAG 1 cut(s) 182
GluI GCNGC 1 cut(s) 242
HapII CCGG 1 cut(s) 275
Hin1II CATG 2 cut(s) 119, 123
HinfI GANTC 1 cut(s) 235
HpaII CCGG 1 cut(s) 275
Hpy188I TCNGA 1 cut(s) 172
Hpy188III TCNNGA 1 cut(s) 140
HpyCH4III ACNGT 1 cut(s) 178
HpyCH4V TGCA 2 cut(s) 24, 119
HpyF10VI GCNNNNNNNGC 1 cut(s) 45
Hsp92II CATG 2 cut(s) 119, 123
Kzo9I GATC 3 cut(s) 75, 167, 212
LpnPI CCDG 8 cut(s) 10, 55, 58, 82, 96, 194, 221, 288
LweI GCATC 1 cut(s) 190
MabI ACCWGGT 1 cut(s) 68
MaeI CTAG 1 cut(s) 182
MaeIII GTNAC 1 cut(s) 223
MalI GATC 3 cut(s) 77, 169, 214
MboI GATC 3 cut(s) 75, 167, 212
MboII GAAGA 1 cut(s) 174
MhlI GDGCHC 2 cut(s) 19, 160
MlyI GAGTC 1 cut(s) 229
Mph1103I ATGCAT 1 cut(s) 121
MseI TTAA 3 cut(s) 110, 135, 304
MslI CAYNNNNRTG 1 cut(s) 120
MspA1I CMGCKG 1 cut(s) 12
MspI CCGG 1 cut(s) 275
MspR9I CCNGG 3 cut(s) 70, 209, 276
Mva1269I GAATGC 1 cut(s) 67
MvaI CCWGG 2 cut(s) 70, 209
MvnI CGCG 1 cut(s) 39
MwoI GCNNNNNNNGC 1 cut(s) 45
NciI CCSGG 1 cut(s) 276
NdeI CATATG 1 cut(s) 92
NdeII GATC 3 cut(s) 75, 167, 212
NlaIII CATG 2 cut(s) 119, 123
NlaIV GGNNCC 2 cut(s) 43, 273
NsiI ATGCAT 1 cut(s) 121
NspI RCATGY 1 cut(s) 123
PctI GAATGC 1 cut(s) 67
PkrI GCNGC 1 cut(s) 243
PleI GAGTC 1 cut(s) 229
PpsI GAGTC 1 cut(s) 229
PshBI ATTAAT 1 cut(s) 135
Psp6I CCWGG 2 cut(s) 68, 207
PspGI CCWGG 2 cut(s) 68, 207
PspN4I GGNNCC 2 cut(s) 43, 273
RsaI GTAC 1 cut(s) 5
RsaNI GTAC 1 cut(s) 4
RseI CAYNNNNRTG 1 cut(s) 120
SaqAI TTAA 3 cut(s) 110, 135, 304
SatI GCNGC 1 cut(s) 242
Sau3AI GATC 3 cut(s) 75, 167, 212
SchI GAGTC 1 cut(s) 229
ScrFI CCNGG 3 cut(s) 70, 209, 276
SduI GDGCHC 2 cut(s) 19, 160
SetI ASST 2 cut(s) 71, 249
SexAI ACCWGGT 1 cut(s) 68
SfaNI GCATC 1 cut(s) 190
SmiMI CAYNNNNRTG 1 cut(s) 120
SsiI CCGC 6 cut(s) 10, 39, 80, 218, 239, 242
SspMI CTAG 1 cut(s) 182
StyD4I CCNGG 3 cut(s) 68, 207, 274
TaaI ACNGT 1 cut(s) 178
TaqI TCGA 1 cut(s) 160
TauI GCSGC 1 cut(s) 244
Tru1I TTAA 3 cut(s) 110, 135, 304
Tru9I TTAA 3 cut(s) 110, 135, 304
TspDTI ATGAA 1 cut(s) 121
VspI ATTAAT 1 cut(s) 135
XceI RCATGY 1 cut(s) 123
XspI CTAG 1 cut(s) 182
Zsp2I ATGCAT 1 cut(s) 121
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.