Rroxscaffold_91G00442990

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000091
OG0000295
Physical Location & Seq
Reverse (-)
14923 .. 21447
6525 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_91G00442990.1

Sequence Viewer

Length: 366 bp
ATGTACGACTGCTGTGCTCGTTGCAGGGGTCTCCCTACGCGGTGCCAGCGTTGTCAAAGGAATGCTACCTGGTTGATCCTGCCAGTAGTCATATGCTTGTCTCAAAGATTAAGCCATGCATGTTCGAGAGGTGAAATTCTTGGATTTATGAAAGACGAACAAGCTGCGAAAGCATTTGCCAAGGATGTTTTCATTAATCAAGAACGAAAGTTGGGGGCTCGAAGACGATCGGATACCGTCCTAGTCTCGACCATAAACGATGCCGACCGGGGATCGGCGGATGTTACTTTTAGGACTCCGCCGGCACCTTATGAGAAATCAAAGTTTTTGGGTTCGGGGGAGTATGGTCGCAAGGCTGAAACTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

121

Amino Acids

13.58

Weight (kDa)

9.39

Isoelectric Point (pI)

42.74

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000295)

Species Orthologous Gene IDs
pyrus_communis pycom2132g00010
rosa_roxburghii Rroxscaffold_101G00451080 Rroxscaffold_103G00450520 Rroxscaffold_105G00447130 Rroxscaffold_105G00447170 Rroxscaffold_107G00442620 Rroxscaffold_107G00442680 Rroxscaffold_107G00442720 Rroxscaffold_109G00451490 Rroxscaffold_111G00451540 Rroxscaffold_117G00451730 Rroxscaffold_119G00451820 Rroxscaffold_124G00451940 Rroxscaffold_129G00452080 Rroxscaffold_130G00452090 Rroxscaffold_133G00452140 Rroxscaffold_137G00452170 Rroxscaffold_139G00452220 Rroxscaffold_13G00448650 Rroxscaffold_13G00448660 Rroxscaffold_144G00452230 Rroxscaffold_147G00452260 Rroxscaffold_15G00447540 Rroxscaffold_15G00447550 Rroxscaffold_15G00447560 Rroxscaffold_16G00446230 Rroxscaffold_17G00435400 Rroxscaffold_17G00435490 Rroxscaffold_17G00435550 Rroxscaffold_17G00435630 Rroxscaffold_17G00435670 Rroxscaffold_17G00435740 Rroxscaffold_17G00435750 Rroxscaffold_17G00435820 Rroxscaffold_17G00435830 Rroxscaffold_17G00435890 Rroxscaffold_17G00435900 Rroxscaffold_1G00000120 Rroxscaffold_1G00000140 Rroxscaffold_1G00000170 Rroxscaffold_20G00445080 Rroxscaffold_21G00439530 Rroxscaffold_21G00439610 Rroxscaffold_22G00439860 Rroxscaffold_22G00439960 Rroxscaffold_24G00445010 Rroxscaffold_26G00447780 Rroxscaffold_27G00446620 Rroxscaffold_27G00446630 Rroxscaffold_28G00446940 Rroxscaffold_28G00446950 Rroxscaffold_28G00446960 Rroxscaffold_29G00441540 Rroxscaffold_29G00441550 Rroxscaffold_32G00442730 Rroxscaffold_32G00442850 Rroxscaffold_33G00439730 Rroxscaffold_36G00440150 Rroxscaffold_37G00445150 Rroxscaffold_38G00444610 Rroxscaffold_38G00444640 Rroxscaffold_39G00448190 Rroxscaffold_39G00448240 Rroxscaffold_39G00448250 Rroxscaffold_40G00447690 Rroxscaffold_42G00450450 Rroxscaffold_44G00440620 Rroxscaffold_44G00440650 Rroxscaffold_45G00438830 Rroxscaffold_45G00438970 Rroxscaffold_46G00448710 Rroxscaffold_46G00448750 Rroxscaffold_47G00444030 Rroxscaffold_51G00447880 Rroxscaffold_52G00439410 Rroxscaffold_55G00450110 Rroxscaffold_56G00450960 Rroxscaffold_57G00443090 Rroxscaffold_57G00443100 Rroxscaffold_58G00448990 Rroxscaffold_58G00449030 Rroxscaffold_58G00449040 Rroxscaffold_59G00442100 Rroxscaffold_59G00442110 Rroxscaffold_59G00442120 Rroxscaffold_59G00442130 Rroxscaffold_60G00448420 Rroxscaffold_61G00449960 Rroxscaffold_61G00449980 Rroxscaffold_62G00437950 Rroxscaffold_65G00445320 Rroxscaffold_65G00445330 Rroxscaffold_67G00448110 Rroxscaffold_67G00448180 Rroxscaffold_6G00387750 Rroxscaffold_70G00446410 Rroxscaffold_73G00439300 Rroxscaffold_74G00442880 Rroxscaffold_74G00442940 Rroxscaffold_75G00447420 Rroxscaffold_76G00448560 Rroxscaffold_77G00449170 Rroxscaffold_77G00449180 Rroxscaffold_77G00449190 Rroxscaffold_77G00449200 Rroxscaffold_81G00450460 Rroxscaffold_81G00450470 Rroxscaffold_82G00450790 Rroxscaffold_82G00450800 Rroxscaffold_84G00451000 Rroxscaffold_84G00451010 Rroxscaffold_90G00448800 Rroxscaffold_91G00442990 Rroxscaffold_91G00443020 Rroxscaffold_91G00443030 Rroxscaffold_91G00443050 Rroxscaffold_92G00446530 Rroxscaffold_93G00440920 Rroxscaffold_95G00449220 Rroxscaffold_96G00449120 Rroxscaffold_96G00449130 Rroxscaffold_96G00449140 Rroxscaffold_98G00451330

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 42, 304
AccII CGCG 1 cut(s) 40
AciI CCGC 3 cut(s) 40, 278, 299
AclWI GGATC 2 cut(s) 70, 280
AcsI RAATTY 1 cut(s) 135
AfaI GTAC 1 cut(s) 5
AfiI CCNNNNNNNGG 1 cut(s) 274
AjnI CCWGG 1 cut(s) 68
AjuI GAANNNNNNNTTGG 2 cut(s) 173, 205
AluBI AGCT 1 cut(s) 164
AluI AGCT 1 cut(s) 164
Alw21I GWGCWC 1 cut(s) 19
Alw26I GTCTC 3 cut(s) 35, 105, 250
AlwI GGATC 2 cut(s) 70, 280
ApeKI GCWGC 1 cut(s) 164
ApoI RAATTY 1 cut(s) 135
AseI ATTAAT 1 cut(s) 195
AsuC2I CCSGG 1 cut(s) 269
AsuHPI GGTGA 1 cut(s) 143
BanI GGYRCC 2 cut(s) 42, 304
BanII GRGCYC 1 cut(s) 220
BbsI GAAGAC 1 cut(s) 229
Bbv12I GWGCWC 1 cut(s) 19
BbvI GCAGC 1 cut(s) 151
BcgI CGANNNNNNTGC 3 cut(s) 30, 146, 180
BciT130I CCWGG 1 cut(s) 70
BciVI GTATCC 1 cut(s) 226
BcnI CCSGG 1 cut(s) 269
BcoDI GTCTC 3 cut(s) 35, 105, 250
BfaI CTAG 1 cut(s) 242
BfuI GTATCC 1 cut(s) 226
BisI GCNGC 1 cut(s) 165
BlsI GCNGC 1 cut(s) 166
Bme1390I CCNGG 2 cut(s) 70, 269
BmiI GGNNCC 2 cut(s) 44, 306
BmrFI CCNGG 2 cut(s) 70, 269
BmsI GCATC 1 cut(s) 250
BpiI GAAGAC 1 cut(s) 229
BpuMI CCSGG 1 cut(s) 269
BsaI GGTCTC 1 cut(s) 35
BsaJI CCNNGG 2 cut(s) 180, 268
Bsc4I CCNNNNNNNGG 1 cut(s) 274
Bse118I RCCGGY 1 cut(s) 301
Bse1I ACTGG 1 cut(s) 83
BseBI CCWGG 1 cut(s) 70
BseDI CCNNGG 2 cut(s) 180, 268
BseGI GGATG 2 cut(s) 190, 286
BseLI CCNNNNNNNGG 1 cut(s) 274
BseNI ACTGG 1 cut(s) 83
BseXI GCAGC 1 cut(s) 151
Bsh1236I CGCG 1 cut(s) 40
Bsh1285I CGRYCG 2 cut(s) 230, 268
BshNI GGYRCC 2 cut(s) 42, 304
BsiEI CGRYCG 2 cut(s) 230, 268
BsiHKAI GWGCWC 1 cut(s) 19
BsiSI CCGG 2 cut(s) 268, 302
BslI CCNNNNNNNGG 1 cut(s) 274
BsmAI GTCTC 3 cut(s) 35, 105, 250
BsmI GAATGC 1 cut(s) 67
Bso31I GGTCTC 1 cut(s) 35
Bsp1286I GDGCHC 2 cut(s) 19, 220
Bsp143I GATC 3 cut(s) 75, 227, 272
BspACI CCGC 3 cut(s) 40, 278, 299
BspFNI CGCG 1 cut(s) 40
BspLI GGNNCC 2 cut(s) 44, 306
BspPI GGATC 2 cut(s) 70, 280
BspT107I GGYRCC 2 cut(s) 42, 304
BspTNI GGTCTC 1 cut(s) 35
BsrFI RCCGGY 1 cut(s) 301
BsrI ACTGG 1 cut(s) 83
BssAI RCCGGY 1 cut(s) 301
BssECI CCNNGG 2 cut(s) 180, 268
BssMI GATC 3 cut(s) 75, 227, 272
BssT1I CCWWGG 1 cut(s) 180
Bst2UI CCWGG 1 cut(s) 70
Bst4CI ACNGT 1 cut(s) 238
BstC8I GCNNGC 2 cut(s) 47, 303
BstF5I GGATG 2 cut(s) 190, 286
BstFNI CGCG 1 cut(s) 40
BstKTI GATC 3 cut(s) 78, 230, 275
BstMAI GTCTC 3 cut(s) 35, 105, 250
BstMBI GATC 3 cut(s) 75, 227, 272
BstMCI CGRYCG 2 cut(s) 230, 268
BstMWI GCNNNNNNNGC 2 cut(s) 46, 170
BstNI CCWGG 1 cut(s) 70
BstNSI RCATGY 1 cut(s) 123
BstSCI CCNGG 2 cut(s) 68, 267
BstUI CGCG 1 cut(s) 40
BstV1I GCAGC 1 cut(s) 151
BstV2I GAAGAC 1 cut(s) 229
BsuI GTATCC 1 cut(s) 226
BtsCI GGATG 2 cut(s) 190, 286
Cac8I GCNNGC 2 cut(s) 47, 303
Cfr10I RCCGGY 1 cut(s) 301
CsiI ACCWGGT 1 cut(s) 68
Csp6I GTAC 1 cut(s) 4
CviAII CATG 2 cut(s) 116, 120
CviJI RGCY 4 cut(s) 114, 164, 218, 356
CviKI_1 RGCY 4 cut(s) 114, 164, 218, 356
CviQI GTAC 1 cut(s) 4
DpnI GATC 3 cut(s) 77, 229, 274
DpnII GATC 3 cut(s) 75, 227, 272
EciI GGCGGA 2 cut(s) 288, 293
Eco130I CCWWGG 1 cut(s) 180
Eco24I GRGCYC 1 cut(s) 220
Eco31I GGTCTC 1 cut(s) 35
EcoRII CCWGG 1 cut(s) 68
EcoT14I CCWWGG 1 cut(s) 180
EcoT22I ATGCAT 1 cut(s) 121
EcoT38I GRGCYC 1 cut(s) 220
ErhI CCWWGG 1 cut(s) 180
FaeI CATG 2 cut(s) 119, 123
FaiI YATR 8 cut(s) 92, 94, 117, 121, 149, 254, 312, 345
FatI CATG 2 cut(s) 115, 119
FauNDI CATATG 1 cut(s) 92
Fnu4HI GCNGC 1 cut(s) 165
FokI GGATG 2 cut(s) 197, 293
FriOI GRGCYC 1 cut(s) 220
Fsp4HI GCNGC 1 cut(s) 165
FspBI CTAG 1 cut(s) 242
GluI GCNGC 1 cut(s) 165
HapII CCGG 2 cut(s) 268, 302
Hin1II CATG 2 cut(s) 119, 123
HinfI GANTC 1 cut(s) 295
HpaII CCGG 2 cut(s) 268, 302
HphI GGTGA 1 cut(s) 143
Hpy188I TCNGA 1 cut(s) 232
Hpy188III TCNNGA 3 cut(s) 126, 200, 247
HpyCH4III ACNGT 1 cut(s) 238
HpyCH4V TGCA 2 cut(s) 24, 119
HpyF10VI GCNNNNNNNGC 2 cut(s) 46, 170
Hsp92II CATG 2 cut(s) 119, 123
KroI GCCGGC 1 cut(s) 301
KroNI GCCGGC 1 cut(s) 303
Kzo9I GATC 3 cut(s) 75, 227, 272
LpnPI CCDG 8 cut(s) 10, 55, 59, 82, 92, 96, 281, 315
Lsp1109I GCAGC 1 cut(s) 151
LweI GCATC 1 cut(s) 250
MabI ACCWGGT 1 cut(s) 68
MaeI CTAG 1 cut(s) 242
MaeIII GTNAC 1 cut(s) 283
MalI GATC 3 cut(s) 77, 229, 274
MboI GATC 3 cut(s) 75, 227, 272
MboII GAAGA 1 cut(s) 234
MhlI GDGCHC 2 cut(s) 19, 220
MluCI AATT 1 cut(s) 135
MlyI GAGTC 1 cut(s) 289
MnlI CCTC 1 cut(s) 122
Mph1103I ATGCAT 1 cut(s) 121
MroNI GCCGGC 1 cut(s) 301
MseI TTAA 3 cut(s) 110, 195, 364
MspI CCGG 2 cut(s) 268, 302
MspR9I CCNGG 2 cut(s) 70, 269
Mva1269I GAATGC 1 cut(s) 67
MvaI CCWGG 1 cut(s) 70
MvnI CGCG 1 cut(s) 40
MwoI GCNNNNNNNGC 2 cut(s) 46, 170
NaeI GCCGGC 1 cut(s) 303
NciI CCSGG 1 cut(s) 269
NdeI CATATG 1 cut(s) 92
NdeII GATC 3 cut(s) 75, 227, 272
NgoMIV GCCGGC 1 cut(s) 301
NlaIII CATG 2 cut(s) 119, 123
NlaIV GGNNCC 2 cut(s) 44, 306
NsiI ATGCAT 1 cut(s) 121
NspI RCATGY 1 cut(s) 123
PctI GAATGC 1 cut(s) 67
PdiI GCCGGC 1 cut(s) 303
PkrI GCNGC 1 cut(s) 166
Ple19I CGATCG 1 cut(s) 230
PleI GAGTC 1 cut(s) 289
PpsI GAGTC 1 cut(s) 289
PshBI ATTAAT 1 cut(s) 195
Psp6I CCWGG 1 cut(s) 68
PspGI CCWGG 1 cut(s) 68
PspN4I GGNNCC 2 cut(s) 44, 306
PvuI CGATCG 1 cut(s) 230
RsaI GTAC 1 cut(s) 5
RsaNI GTAC 1 cut(s) 4
SaqAI TTAA 3 cut(s) 110, 195, 364
SatI GCNGC 1 cut(s) 165
Sau3AI GATC 3 cut(s) 75, 227, 272
SchI GAGTC 1 cut(s) 289
ScrFI CCNGG 2 cut(s) 70, 269
SduI GDGCHC 2 cut(s) 19, 220
SetI ASST 4 cut(s) 71, 133, 166, 310
SexAI ACCWGGT 1 cut(s) 68
SfaNI GCATC 1 cut(s) 250
Sse9I AATT 1 cut(s) 135
SsiI CCGC 3 cut(s) 40, 278, 299
SspMI CTAG 1 cut(s) 242
StyD4I CCNGG 2 cut(s) 68, 267
StyI CCWWGG 1 cut(s) 180
TaaI ACNGT 1 cut(s) 238
TaqI TCGA 3 cut(s) 125, 220, 248
TasI AATT 1 cut(s) 135
Tru1I TTAA 3 cut(s) 110, 195, 364
Tru9I TTAA 3 cut(s) 110, 195, 364
TseI GCWGC 1 cut(s) 164
TspDTI ATGAA 2 cut(s) 164, 181
VspI ATTAAT 1 cut(s) 195
XapI RAATTY 1 cut(s) 135
XceI RCATGY 1 cut(s) 123
XspI CTAG 1 cut(s) 242
Zsp2I ATGCAT 1 cut(s) 121
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.