Rroxscaffold_51G00447880

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000051
OG0000295
Physical Location & Seq
Forward (+)
53551 .. 54335
785 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_51G00447880.1

Sequence Viewer

Length: 378 bp
ATGGTGGTGACGGGTGACGGAGAATTAGGGTTCGATTCCGGAGAGGGAGCCCGAGAAACGGCTACCACATCCAAGGAAGGCAGCAGCGCGCAAATTACCCAATCCCGACACGGGGAGTCGGGGCATTCGTATTTCATAGTCGTAGGTGAAATTCTTGGATTTATGAAAGACGAACAACTGCGAAAGCATTTGCCAAGGATGTTTTCATTAATCAAGAACGAAAGTTGGGGCTCGAAGACGATCGATACCGTCCTAGTCTCAACCATAAACGATGCCGACCAGGGATCGGCGGATGTTACTTTTAGGACTCCGCCGCACCTTATGAGAAATCAAAGTTTTTGGGTTCCGGGGGAGTATGGTCGCAAGGCTGAAACTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

125

Amino Acids

13.74

Weight (kDa)

5.51

Isoelectric Point (pI)

24.18

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000295)

Species Orthologous Gene IDs
pyrus_communis pycom2132g00010
rosa_roxburghii Rroxscaffold_101G00451080 Rroxscaffold_103G00450520 Rroxscaffold_105G00447130 Rroxscaffold_105G00447170 Rroxscaffold_107G00442620 Rroxscaffold_107G00442680 Rroxscaffold_107G00442720 Rroxscaffold_109G00451490 Rroxscaffold_111G00451540 Rroxscaffold_117G00451730 Rroxscaffold_119G00451820 Rroxscaffold_124G00451940 Rroxscaffold_129G00452080 Rroxscaffold_130G00452090 Rroxscaffold_133G00452140 Rroxscaffold_137G00452170 Rroxscaffold_139G00452220 Rroxscaffold_13G00448650 Rroxscaffold_13G00448660 Rroxscaffold_144G00452230 Rroxscaffold_147G00452260 Rroxscaffold_15G00447540 Rroxscaffold_15G00447550 Rroxscaffold_15G00447560 Rroxscaffold_16G00446230 Rroxscaffold_17G00435400 Rroxscaffold_17G00435490 Rroxscaffold_17G00435550 Rroxscaffold_17G00435630 Rroxscaffold_17G00435670 Rroxscaffold_17G00435740 Rroxscaffold_17G00435750 Rroxscaffold_17G00435820 Rroxscaffold_17G00435830 Rroxscaffold_17G00435890 Rroxscaffold_17G00435900 Rroxscaffold_1G00000120 Rroxscaffold_1G00000140 Rroxscaffold_1G00000170 Rroxscaffold_20G00445080 Rroxscaffold_21G00439530 Rroxscaffold_21G00439610 Rroxscaffold_22G00439860 Rroxscaffold_22G00439960 Rroxscaffold_24G00445010 Rroxscaffold_26G00447780 Rroxscaffold_27G00446620 Rroxscaffold_27G00446630 Rroxscaffold_28G00446940 Rroxscaffold_28G00446950 Rroxscaffold_28G00446960 Rroxscaffold_29G00441540 Rroxscaffold_29G00441550 Rroxscaffold_32G00442730 Rroxscaffold_32G00442850 Rroxscaffold_33G00439730 Rroxscaffold_36G00440150 Rroxscaffold_37G00445150 Rroxscaffold_38G00444610 Rroxscaffold_38G00444640 Rroxscaffold_39G00448190 Rroxscaffold_39G00448240 Rroxscaffold_39G00448250 Rroxscaffold_40G00447690 Rroxscaffold_42G00450450 Rroxscaffold_44G00440620 Rroxscaffold_44G00440650 Rroxscaffold_45G00438830 Rroxscaffold_45G00438970 Rroxscaffold_46G00448710 Rroxscaffold_46G00448750 Rroxscaffold_47G00444030 Rroxscaffold_51G00447880 Rroxscaffold_52G00439410 Rroxscaffold_55G00450110 Rroxscaffold_56G00450960 Rroxscaffold_57G00443090 Rroxscaffold_57G00443100 Rroxscaffold_58G00448990 Rroxscaffold_58G00449030 Rroxscaffold_58G00449040 Rroxscaffold_59G00442100 Rroxscaffold_59G00442110 Rroxscaffold_59G00442120 Rroxscaffold_59G00442130 Rroxscaffold_60G00448420 Rroxscaffold_61G00449960 Rroxscaffold_61G00449980 Rroxscaffold_62G00437950 Rroxscaffold_65G00445320 Rroxscaffold_65G00445330 Rroxscaffold_67G00448110 Rroxscaffold_67G00448180 Rroxscaffold_6G00387750 Rroxscaffold_70G00446410 Rroxscaffold_73G00439300 Rroxscaffold_74G00442880 Rroxscaffold_74G00442940 Rroxscaffold_75G00447420 Rroxscaffold_76G00448560 Rroxscaffold_77G00449170 Rroxscaffold_77G00449180 Rroxscaffold_77G00449190 Rroxscaffold_77G00449200 Rroxscaffold_81G00450460 Rroxscaffold_81G00450470 Rroxscaffold_82G00450790 Rroxscaffold_82G00450800 Rroxscaffold_84G00451000 Rroxscaffold_84G00451010 Rroxscaffold_90G00448800 Rroxscaffold_91G00442990 Rroxscaffold_91G00443020 Rroxscaffold_91G00443030 Rroxscaffold_91G00443050 Rroxscaffold_92G00446530 Rroxscaffold_93G00440920 Rroxscaffold_95G00449220 Rroxscaffold_96G00449120 Rroxscaffold_96G00449130 Rroxscaffold_96G00449140 Rroxscaffold_98G00451330

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 89
AccIII TCCGGA 1 cut(s) 38
AciI CCGC 3 cut(s) 290, 311, 314
AclWI GGATC 1 cut(s) 292
AcsI RAATTY 1 cut(s) 150
AfiI CCNNNNNNNGG 4 cut(s) 58, 111, 112, 286
AjnI CCWGG 1 cut(s) 279
AjuI GAANNNNNNNTTGG 2 cut(s) 187, 219
Alw26I GTCTC 1 cut(s) 262
AlwI GGATC 1 cut(s) 292
Ama87I CYCGRG 1 cut(s) 51
Aor13HI TCCGGA 1 cut(s) 38
ApeKI GCWGC 2 cut(s) 81, 84
ApoI RAATTY 1 cut(s) 150
AseI ATTAAT 1 cut(s) 209
AspLEI GCGC 2 cut(s) 89, 91
AsuC2I CCSGG 1 cut(s) 348
AsuHPI GGTGA 3 cut(s) 19, 26, 158
AvaI CYCGRG 1 cut(s) 51
BanII GRGCYC 2 cut(s) 52, 233
BbsI GAAGAC 1 cut(s) 242
BbvI GCAGC 2 cut(s) 93, 96
BceAI ACGGC 1 cut(s) 75
BciT130I CCWGG 1 cut(s) 281
BcnI CCSGG 1 cut(s) 348
BcoDI GTCTC 1 cut(s) 262
BfaI CTAG 1 cut(s) 254
BisI GCNGC 3 cut(s) 82, 85, 314
BlsI GCNGC 3 cut(s) 83, 86, 315
Bme1390I CCNGG 2 cut(s) 281, 348
BmeT110I CYCGRG 1 cut(s) 51
BmiI GGNNCC 2 cut(s) 49, 345
BmrFI CCNGG 2 cut(s) 281, 348
BmsI GCATC 1 cut(s) 262
BpiI GAAGAC 1 cut(s) 242
BpuMI CCSGG 1 cut(s) 348
Bsa29I ATCGAT 1 cut(s) 243
BsaJI CCNNGG 4 cut(s) 72, 194, 280, 347
BsaWI WCCGGW 1 cut(s) 38
Bsc4I CCNNNNNNNGG 4 cut(s) 58, 111, 112, 286
BseAI TCCGGA 1 cut(s) 38
BseBI CCWGG 1 cut(s) 281
BseCI ATCGAT 1 cut(s) 243
BseDI CCNNGG 4 cut(s) 72, 194, 280, 347
BseGI GGATG 3 cut(s) 68, 204, 298
BseLI CCNNNNNNNGG 4 cut(s) 58, 111, 112, 286
BsePI GCGCGC 1 cut(s) 87
BseXI GCAGC 2 cut(s) 93, 96
Bsh1236I CGCG 1 cut(s) 89
Bsh1285I CGRYCG 1 cut(s) 243
BshVI ATCGAT 1 cut(s) 243
BsiEI CGRYCG 1 cut(s) 243
BsiHKCI CYCGRG 1 cut(s) 51
BsiSI CCGG 2 cut(s) 39, 347
BslI CCNNNNNNNGG 4 cut(s) 58, 111, 112, 286
BsmAI GTCTC 1 cut(s) 262
BsmI GAATGC 1 cut(s) 124
BsoBI CYCGRG 1 cut(s) 51
Bsp1286I GDGCHC 2 cut(s) 52, 233
Bsp13I TCCGGA 1 cut(s) 38
Bsp143I GATC 2 cut(s) 240, 284
BspACI CCGC 3 cut(s) 290, 311, 314
BspDI ATCGAT 1 cut(s) 243
BspEI TCCGGA 1 cut(s) 38
BspFNI CGCG 1 cut(s) 89
BspLI GGNNCC 2 cut(s) 49, 345
BspPI GGATC 1 cut(s) 292
BssECI CCNNGG 4 cut(s) 72, 194, 280, 347
BssHII GCGCGC 1 cut(s) 87
BssMI GATC 2 cut(s) 240, 284
BssT1I CCWWGG 2 cut(s) 72, 194
Bst2UI CCWGG 1 cut(s) 281
Bst4CI ACNGT 1 cut(s) 250
BstC8I GCNNGC 1 cut(s) 89
BstF5I GGATG 3 cut(s) 68, 204, 298
BstFNI CGCG 1 cut(s) 89
BstHHI GCGC 2 cut(s) 89, 91
BstKTI GATC 2 cut(s) 243, 287
BstMAI GTCTC 1 cut(s) 262
BstMBI GATC 2 cut(s) 240, 284
BstMCI CGRYCG 1 cut(s) 243
BstNI CCWGG 1 cut(s) 281
BstSCI CCNGG 2 cut(s) 279, 346
BstUI CGCG 1 cut(s) 89
BstV1I GCAGC 2 cut(s) 93, 96
BstV2I GAAGAC 1 cut(s) 242
Bsu15I ATCGAT 1 cut(s) 243
BsuTUI ATCGAT 1 cut(s) 243
BtsCI GGATG 3 cut(s) 68, 204, 298
Cac8I GCNNGC 1 cut(s) 89
CfoI GCGC 2 cut(s) 89, 91
ClaI ATCGAT 1 cut(s) 243
CviJI RGCY 4 cut(s) 50, 62, 231, 368
CviKI_1 RGCY 4 cut(s) 50, 62, 231, 368
DpnI GATC 2 cut(s) 242, 286
DpnII GATC 2 cut(s) 240, 284
EciI GGCGGA 2 cut(s) 300, 305
Eco130I CCWWGG 2 cut(s) 72, 194
Eco24I GRGCYC 2 cut(s) 52, 233
Eco88I CYCGRG 1 cut(s) 51
EcoRII CCWGG 1 cut(s) 279
EcoT14I CCWWGG 2 cut(s) 72, 194
EcoT38I GRGCYC 2 cut(s) 52, 233
ErhI CCWWGG 2 cut(s) 72, 194
FaiI YATR 5 cut(s) 137, 164, 266, 323, 357
Fnu4HI GCNGC 3 cut(s) 82, 85, 314
FokI GGATG 3 cut(s) 55, 211, 305
FriOI GRGCYC 2 cut(s) 52, 233
Fsp4HI GCNGC 3 cut(s) 82, 85, 314
FspBI CTAG 1 cut(s) 254
GlaI GCGC 2 cut(s) 88, 90
GluI GCNGC 3 cut(s) 82, 85, 314
HapII CCGG 2 cut(s) 39, 347
HhaI GCGC 2 cut(s) 89, 91
Hin6I GCGC 2 cut(s) 87, 89
HinP1I GCGC 2 cut(s) 87, 89
HinfI GANTC 3 cut(s) 35, 116, 307
HpaII CCGG 2 cut(s) 39, 347
HphI GGTGA 3 cut(s) 19, 26, 158
Hpy188III TCNNGA 3 cut(s) 39, 105, 214
HpyAV CCTTC 1 cut(s) 71
HpyCH4III ACNGT 1 cut(s) 250
HspAI GCGC 2 cut(s) 87, 89
Kpn2I TCCGGA 1 cut(s) 38
Kzo9I GATC 2 cut(s) 240, 284
LmnI GCTCC 1 cut(s) 47
LpnPI CCDG 4 cut(s) 52, 266, 293, 360
Lsp1109I GCAGC 2 cut(s) 93, 96
LweI GCATC 1 cut(s) 262
MaeI CTAG 1 cut(s) 254
MaeIII GTNAC 3 cut(s) 7, 14, 295
MalI GATC 2 cut(s) 242, 286
MboI GATC 2 cut(s) 240, 284
MboII GAAGA 1 cut(s) 247
MhlI GDGCHC 2 cut(s) 52, 233
MluCI AATT 3 cut(s) 23, 93, 150
MlyI GAGTC 2 cut(s) 125, 301
MnlI CCTC 1 cut(s) 37
MroI TCCGGA 1 cut(s) 38
MseI TTAA 2 cut(s) 209, 376
MspI CCGG 2 cut(s) 39, 347
MspR9I CCNGG 2 cut(s) 281, 348
Mva1269I GAATGC 1 cut(s) 124
MvaI CCWGG 1 cut(s) 281
MvnI CGCG 1 cut(s) 89
NciI CCSGG 1 cut(s) 348
NdeII GATC 2 cut(s) 240, 284
NlaIV GGNNCC 2 cut(s) 49, 345
NmuCI GTSAC 2 cut(s) 7, 14
PauI GCGCGC 1 cut(s) 87
PcsI WCGNNNNNNNCGW 1 cut(s) 125
PctI GAATGC 1 cut(s) 124
PfeI GAWTC 1 cut(s) 35
PkrI GCNGC 3 cut(s) 83, 86, 315
Ple19I CGATCG 1 cut(s) 243
PleI GAGTC 2 cut(s) 124, 301
PpsI GAGTC 2 cut(s) 124, 301
PshBI ATTAAT 1 cut(s) 209
Psp6I CCWGG 1 cut(s) 279
PspGI CCWGG 1 cut(s) 279
PspN4I GGNNCC 2 cut(s) 49, 345
PteI GCGCGC 1 cut(s) 87
PvuI CGATCG 1 cut(s) 243
SaqAI TTAA 2 cut(s) 209, 376
SatI GCNGC 3 cut(s) 82, 85, 314
Sau3AI GATC 2 cut(s) 240, 284
SchI GAGTC 2 cut(s) 125, 301
ScrFI CCNGG 2 cut(s) 281, 348
SduI GDGCHC 2 cut(s) 52, 233
SetI ASST 2 cut(s) 148, 321
SfaNI GCATC 1 cut(s) 262
Sse9I AATT 3 cut(s) 23, 93, 150
SsiI CCGC 3 cut(s) 290, 311, 314
SspMI CTAG 1 cut(s) 254
StyD4I CCNGG 2 cut(s) 279, 346
StyI CCWWGG 2 cut(s) 72, 194
TaaI ACNGT 1 cut(s) 250
TaqI TCGA 3 cut(s) 33, 233, 243
TasI AATT 3 cut(s) 23, 93, 150
TauI GCSGC 1 cut(s) 316
TfiI GAWTC 1 cut(s) 35
Tru1I TTAA 2 cut(s) 209, 376
Tru9I TTAA 2 cut(s) 209, 376
TseFI GTSAC 2 cut(s) 7, 14
TseI GCWGC 2 cut(s) 81, 84
Tsp45I GTSAC 2 cut(s) 7, 14
TspDTI ATGAA 3 cut(s) 124, 179, 195
TspGWI ACGGA 1 cut(s) 33
VspI ATTAAT 1 cut(s) 209
XapI RAATTY 1 cut(s) 150
XspI CTAG 1 cut(s) 254
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.