Rroxscaffold_28G00446940

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000028
OG0000295
Physical Location & Seq
Reverse (-)
48007 .. 59164
11158 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_28G00446940.1

Sequence Viewer

Length: 279 bp
ATGATTAACAGGGACAGTCGGGGGCATTCGTATTTCATAGTCAGAGGTGAAATTCTTGGATTTATGAAAGACGAACAACTGCGAAAGAAAGCATTTGCCAAGGATGTTTTCATTAATCAAGAACGAAAGTTGGGGGCTCGAAGACGATCAGATACCGTCCTAGTCTCAACCATAAACGATGCCGACCAGGGATCGGCGGATGTTACTTTTAGGACTCCGCCGGCACCTTATGAGAAATCAAAGTTTTTGGGTTCCGGGGGAGTATGGTCGCAAGGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

92

Amino Acids

10.35

Weight (kDa)

9.89

Isoelectric Point (pI)

41.36

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000295)

Species Orthologous Gene IDs
pyrus_communis pycom2132g00010
rosa_roxburghii Rroxscaffold_101G00451080 Rroxscaffold_103G00450520 Rroxscaffold_105G00447130 Rroxscaffold_105G00447170 Rroxscaffold_107G00442620 Rroxscaffold_107G00442680 Rroxscaffold_107G00442720 Rroxscaffold_109G00451490 Rroxscaffold_111G00451540 Rroxscaffold_117G00451730 Rroxscaffold_119G00451820 Rroxscaffold_124G00451940 Rroxscaffold_129G00452080 Rroxscaffold_130G00452090 Rroxscaffold_133G00452140 Rroxscaffold_137G00452170 Rroxscaffold_139G00452220 Rroxscaffold_13G00448650 Rroxscaffold_13G00448660 Rroxscaffold_144G00452230 Rroxscaffold_147G00452260 Rroxscaffold_15G00447540 Rroxscaffold_15G00447550 Rroxscaffold_15G00447560 Rroxscaffold_16G00446230 Rroxscaffold_17G00435400 Rroxscaffold_17G00435490 Rroxscaffold_17G00435550 Rroxscaffold_17G00435630 Rroxscaffold_17G00435670 Rroxscaffold_17G00435740 Rroxscaffold_17G00435750 Rroxscaffold_17G00435820 Rroxscaffold_17G00435830 Rroxscaffold_17G00435890 Rroxscaffold_17G00435900 Rroxscaffold_1G00000120 Rroxscaffold_1G00000140 Rroxscaffold_1G00000170 Rroxscaffold_20G00445080 Rroxscaffold_21G00439530 Rroxscaffold_21G00439610 Rroxscaffold_22G00439860 Rroxscaffold_22G00439960 Rroxscaffold_24G00445010 Rroxscaffold_26G00447780 Rroxscaffold_27G00446620 Rroxscaffold_27G00446630 Rroxscaffold_28G00446940 Rroxscaffold_28G00446950 Rroxscaffold_28G00446960 Rroxscaffold_29G00441540 Rroxscaffold_29G00441550 Rroxscaffold_32G00442730 Rroxscaffold_32G00442850 Rroxscaffold_33G00439730 Rroxscaffold_36G00440150 Rroxscaffold_37G00445150 Rroxscaffold_38G00444610 Rroxscaffold_38G00444640 Rroxscaffold_39G00448190 Rroxscaffold_39G00448240 Rroxscaffold_39G00448250 Rroxscaffold_40G00447690 Rroxscaffold_42G00450450 Rroxscaffold_44G00440620 Rroxscaffold_44G00440650 Rroxscaffold_45G00438830 Rroxscaffold_45G00438970 Rroxscaffold_46G00448710 Rroxscaffold_46G00448750 Rroxscaffold_47G00444030 Rroxscaffold_51G00447880 Rroxscaffold_52G00439410 Rroxscaffold_55G00450110 Rroxscaffold_56G00450960 Rroxscaffold_57G00443090 Rroxscaffold_57G00443100 Rroxscaffold_58G00448990 Rroxscaffold_58G00449030 Rroxscaffold_58G00449040 Rroxscaffold_59G00442100 Rroxscaffold_59G00442110 Rroxscaffold_59G00442120 Rroxscaffold_59G00442130 Rroxscaffold_60G00448420 Rroxscaffold_61G00449960 Rroxscaffold_61G00449980 Rroxscaffold_62G00437950 Rroxscaffold_65G00445320 Rroxscaffold_65G00445330 Rroxscaffold_67G00448110 Rroxscaffold_67G00448180 Rroxscaffold_6G00387750 Rroxscaffold_70G00446410 Rroxscaffold_73G00439300 Rroxscaffold_74G00442880 Rroxscaffold_74G00442940 Rroxscaffold_75G00447420 Rroxscaffold_76G00448560 Rroxscaffold_77G00449170 Rroxscaffold_77G00449180 Rroxscaffold_77G00449190 Rroxscaffold_77G00449200 Rroxscaffold_81G00450460 Rroxscaffold_81G00450470 Rroxscaffold_82G00450790 Rroxscaffold_82G00450800 Rroxscaffold_84G00451000 Rroxscaffold_84G00451010 Rroxscaffold_90G00448800 Rroxscaffold_91G00442990 Rroxscaffold_91G00443020 Rroxscaffold_91G00443030 Rroxscaffold_91G00443050 Rroxscaffold_92G00446530 Rroxscaffold_93G00440920 Rroxscaffold_95G00449220 Rroxscaffold_96G00449120 Rroxscaffold_96G00449130 Rroxscaffold_96G00449140 Rroxscaffold_98G00451330

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 223
AciI CCGC 2 cut(s) 197, 218
AclWI GGATC 1 cut(s) 199
AcsI RAATTY 1 cut(s) 51
AfiI CCNNNNNNNGG 1 cut(s) 193
AjnI CCWGG 1 cut(s) 186
AjuI GAANNNNNNNTTGG 2 cut(s) 92, 124
Alw26I GTCTC 1 cut(s) 169
AlwI GGATC 1 cut(s) 199
ApoI RAATTY 1 cut(s) 51
AseI ATTAAT 1 cut(s) 114
AsuC2I CCSGG 1 cut(s) 256
AsuHPI GGTGA 1 cut(s) 59
BanI GGYRCC 1 cut(s) 223
BanII GRGCYC 1 cut(s) 139
BbsI GAAGAC 1 cut(s) 148
BciT130I CCWGG 1 cut(s) 188
BcnI CCSGG 1 cut(s) 256
BcoDI GTCTC 1 cut(s) 169
BfaI CTAG 1 cut(s) 161
Bme1390I CCNGG 2 cut(s) 188, 256
BmiI GGNNCC 2 cut(s) 225, 253
BmrFI CCNGG 2 cut(s) 188, 256
BmsI GCATC 1 cut(s) 169
BpiI GAAGAC 1 cut(s) 148
BpuMI CCSGG 1 cut(s) 256
BsaJI CCNNGG 3 cut(s) 99, 187, 255
Bsc4I CCNNNNNNNGG 1 cut(s) 193
Bse118I RCCGGY 1 cut(s) 220
BseBI CCWGG 1 cut(s) 188
BseDI CCNNGG 3 cut(s) 99, 187, 255
BseGI GGATG 2 cut(s) 109, 205
BseLI CCNNNNNNNGG 1 cut(s) 193
BshNI GGYRCC 1 cut(s) 223
BsiSI CCGG 2 cut(s) 221, 255
BslFI GGGAC 1 cut(s) 26
BslI CCNNNNNNNGG 1 cut(s) 193
BsmAI GTCTC 1 cut(s) 169
BsmFI GGGAC 1 cut(s) 26
BsmI GAATGC 1 cut(s) 25
Bsp1286I GDGCHC 1 cut(s) 139
Bsp143I GATC 2 cut(s) 146, 191
BspACI CCGC 2 cut(s) 197, 218
BspLI GGNNCC 2 cut(s) 225, 253
BspPI GGATC 1 cut(s) 199
BspT107I GGYRCC 1 cut(s) 223
BsrFI RCCGGY 1 cut(s) 220
BssAI RCCGGY 1 cut(s) 220
BssECI CCNNGG 3 cut(s) 99, 187, 255
BssMI GATC 2 cut(s) 146, 191
BssT1I CCWWGG 1 cut(s) 99
Bst2UI CCWGG 1 cut(s) 188
Bst4CI ACNGT 2 cut(s) 17, 157
BstC8I GCNNGC 1 cut(s) 222
BstF5I GGATG 2 cut(s) 109, 205
BstKTI GATC 2 cut(s) 149, 194
BstMAI GTCTC 1 cut(s) 169
BstMBI GATC 2 cut(s) 146, 191
BstNI CCWGG 1 cut(s) 188
BstSCI CCNGG 2 cut(s) 186, 254
BstV2I GAAGAC 1 cut(s) 148
BtsCI GGATG 2 cut(s) 109, 205
Cac8I GCNNGC 1 cut(s) 222
Cfr10I RCCGGY 1 cut(s) 220
CviJI RGCY 2 cut(s) 137, 276
CviKI_1 RGCY 2 cut(s) 137, 276
DpnI GATC 2 cut(s) 148, 193
DpnII GATC 2 cut(s) 146, 191
EciI GGCGGA 2 cut(s) 207, 212
Eco130I CCWWGG 1 cut(s) 99
Eco24I GRGCYC 1 cut(s) 139
EcoRII CCWGG 1 cut(s) 186
EcoT14I CCWWGG 1 cut(s) 99
EcoT38I GRGCYC 1 cut(s) 139
ErhI CCWWGG 1 cut(s) 99
FaiI YATR 5 cut(s) 38, 65, 173, 231, 265
FaqI GGGAC 1 cut(s) 26
FokI GGATG 2 cut(s) 116, 212
FriOI GRGCYC 1 cut(s) 139
FspBI CTAG 1 cut(s) 161
HapII CCGG 2 cut(s) 221, 255
HinfI GANTC 1 cut(s) 214
HpaII CCGG 2 cut(s) 221, 255
HphI GGTGA 1 cut(s) 59
Hpy188I TCNGA 2 cut(s) 44, 151
Hpy188III TCNNGA 1 cut(s) 119
HpyCH4III ACNGT 2 cut(s) 17, 157
KroI GCCGGC 1 cut(s) 220
KroNI GCCGGC 1 cut(s) 222
Kzo9I GATC 2 cut(s) 146, 191
LpnPI CCDG 4 cut(s) 173, 200, 234, 268
LweI GCATC 1 cut(s) 169
MaeI CTAG 1 cut(s) 161
MaeIII GTNAC 1 cut(s) 202
MalI GATC 2 cut(s) 148, 193
MboI GATC 2 cut(s) 146, 191
MboII GAAGA 1 cut(s) 153
MhlI GDGCHC 1 cut(s) 139
MluCI AATT 1 cut(s) 51
MlyI GAGTC 1 cut(s) 208
MnlI CCTC 1 cut(s) 38
MroNI GCCGGC 1 cut(s) 220
MseI TTAA 2 cut(s) 6, 114
MspI CCGG 2 cut(s) 221, 255
MspR9I CCNGG 2 cut(s) 188, 256
Mva1269I GAATGC 1 cut(s) 25
MvaI CCWGG 1 cut(s) 188
NaeI GCCGGC 1 cut(s) 222
NciI CCSGG 1 cut(s) 256
NdeII GATC 2 cut(s) 146, 191
NgoMIV GCCGGC 1 cut(s) 220
NlaIV GGNNCC 2 cut(s) 225, 253
PctI GAATGC 1 cut(s) 25
PdiI GCCGGC 1 cut(s) 222
PleI GAGTC 1 cut(s) 208
PpsI GAGTC 1 cut(s) 208
PshBI ATTAAT 1 cut(s) 114
Psp6I CCWGG 1 cut(s) 186
PspGI CCWGG 1 cut(s) 186
PspN4I GGNNCC 2 cut(s) 225, 253
SaqAI TTAA 2 cut(s) 6, 114
Sau3AI GATC 2 cut(s) 146, 191
SchI GAGTC 1 cut(s) 208
ScrFI CCNGG 2 cut(s) 188, 256
SduI GDGCHC 1 cut(s) 139
SetI ASST 2 cut(s) 49, 229
SfaNI GCATC 1 cut(s) 169
Sse9I AATT 1 cut(s) 51
SsiI CCGC 2 cut(s) 197, 218
SspMI CTAG 1 cut(s) 161
StyD4I CCNGG 2 cut(s) 186, 254
StyI CCWWGG 1 cut(s) 99
TaaI ACNGT 2 cut(s) 17, 157
TaqI TCGA 1 cut(s) 139
TasI AATT 1 cut(s) 51
Tru1I TTAA 2 cut(s) 6, 114
Tru9I TTAA 2 cut(s) 6, 114
TspDTI ATGAA 3 cut(s) 25, 80, 100
VspI ATTAAT 1 cut(s) 114
XapI RAATTY 1 cut(s) 51
XspI CTAG 1 cut(s) 161
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.